cluster # 3509

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Anopheles gambiae
cluster # 3509 cluster # 3509 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3509#0 length = 607 sequences # 1

consensus_3509#1 length = 550 sequences # 1
consensus_3509#2 length = 410 sequences # 1

consensusID : consensus_3509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [GCAGAATCGGCACGATGTGATTCGCCAGGAGTATGAGGNCCGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGATGACGGTGACGATTAAGGAGCTGTCCGAGGGGAGGACCGATTTAAAAACATGTGTCCCAAGTATCTGATATTTTCCAACGGGTCAAAGAAAGTACACACCGATNAGATCGGGTTCAAANCGCACTCACGAGGCGTCAAATTTCGCGACAGTATCGATCCGGGGTCCATCGCTGCGTGAACGCATAGACGCTACGCGATACGGGAGACGCGAGCTACAGAATGAAGAGCCTCCGAGTGGAACCGAACTGGGGCGAACTATGAAGGCGGTGTGCGGGACGATTCGACAACGGTGGACAACAACTGATTCGATCTGGACGGGCACCACTCATAGGATGGGGCTGAGTNCGGAGCACCGCGTATCTGTAACGTGAACAGCGACCGTGGGCGGAAAGAACTGTGGTTGATTCGTAAACACCGGCGTCGATNCGGGCCGCGATCGGCACAGGAGATCGGNATATACCACGGTGAATAGACTTTGGATGACGCTTAAAGAAACGTGGGGCNAAGAATNGNCTTGCGAA]

[+] EMBL BX467865             [GCAGAATCGGCACGATGTGATTCGCCAGGAGTATGAGGNCCGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGATGACGGTGACGATTAAGGAGCTGTCCGAGGGGAGGACCGATTTAAAAACATGTGTCCCAAGTATCTGATATTTTCCAACGGGTCAAAGAAAGTACACACCGATNAGATCGGGTTCAAANCGCACTCACGAGGCGTCAAATTTCGCGACAGTATCGATCCGGGGTCCATCGCTGCGTGAACGCATAGACGCTACGCGATACGGGAGACGCGAGCTACAGAATGAAGAGCCTCCGAGTGGAACCGAACTGGGGCGAACTATGAAGGCGGTGTGCGGGACGATTCGACAACGGTGGACAACAACTGATTCGATCTGGACGGGCACCACTCATAGGATGGGGCTGAGTNCGGAGCACCGCGTATCTGTAACGTGAACAGCGACCGTGGGCGGAAAGAACTGTGGTTGATTCGTAAACACCGGCGTCGATNCGGGCCGCGATCGGCACAGGAGATCGGNATATACCACGGTGAATAGACTTTGGATGACGCTTAAAGAAACGTGGGGCNAAGAATNGNCTTGCGAA]




>consensus_3509#0
GCAGAATCGGCACGATGTGATTCGCCAGGAGTATGAGGNCCGTCTTACTACGAATCCTCG
GACGACTGTCTCGAGGACGACGAGGATGACGGTGACGATTAAGGAGCTGTCCGAGGGGAG
GACCGATTTAAAAACATGTGTCCCAAGTATCTGATATTTTCCAACGGGTCAAAGAAAGTA
CACACCGATNAGATCGGGTTCAAANCGCACTCACGAGGCGTCAAATTTCGCGACAGTATC
GATCCGGGGTCCATCGCTGCGTGAACGCATAGACGCTACGCGATACGGGAGACGCGAGCT
ACAGAATGAAGAGCCTCCGAGTGGAACCGAACTGGGGCGAACTATGAAGGCGGTGTGCGG
GACGATTCGACAACGGTGGACAACAACTGATTCGATCTGGACGGGCACCACTCATAGGAT
GGGGCTGAGTNCGGAGCACCGCGTATCTGTAACGTGAACAGCGACCGTGGGCGGAAAGAA
CTGTGGTTGATTCGTAAACACCGGCGTCGATNCGGGCCGCGATCGGCACAGGAGATCGGN
ATATACCACGGTGAATAGACTTTGGATGACGCTTAAAGAAACGTGGGGCNAAGAATNGNC
TTGCGAA

consensusID : consensus_3509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [CATTTGCTCTCGGGCGATCTGAGCTGGTTGGCACATTTGGTCAGCTCCTCAATACTGTGGCTCAACAAAGCGAACCAGGAGGTTGACTCAGAGCATACGCCAGTACGTAGCCAGATGTACAAATTCTACAATCGCAATGCCAGCTCCATACGTGCGATCATGGTCGCGAACTGTCCATGGTTAAGTGATGAAGCGGAAGTGAAAAAAGAAGGCGAAAAAGAAAAGGGCACCAGTGATGCAGAGCAGAAATCGTCGGACGACTAACCAGGAACCAGTAGTGGCGATCGTCGGGCCGGAAACCCTCTGTCACACTACCAGATGAGCCAAGACGTCGATTCGGACGAGGAACAGGACGAAGGCGTTGATGATGGCCAGGATCCCAGAGCAGCGGAAGATGTGCCGTACCAGCTGCTCGTTGGCGACCAGGTAGATTACGCTAGCCCGATACAGTATCTGCAAGAATTTCGCCAGGAGTATGAAGAGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGACGACGGTGACGATGAGGAGCTGT]

[+] EMBL BX606552             [CATTTGCTCTCGGGCGATCTGAGCTGGTTGGCACATTTGGTCAGCTCCTCAATACTGTGGCTCAACAAAGCGAACCAGGAGGTTGACTCAGAGCATACGCCAGTACGTAGCCAGATGTACAAATTCTACAATCGCAATGCCAGCTCCATACGTGCGATCATGGTCGCGAACTGTCCATGGTTAAGTGATGAAGCGGAAGTGAAAAAAGAAGGCGAAAAAGAAAAGGGCACCAGTGATGCAGAGCAGAAATCGTCGGACGACTAACCAGGAACCAGTAGTGGCGATCGTCGGGCCGGAAACCCTCTGTCACACTACCAGATGAGCCAAGACGTCGATTCGGACGAGGAACAGGACGAAGGCGTTGATGATGGCCAGGATCCCAGAGCAGCGGAAGATGTGCCGTACCAGCTGCTCGTTGGCGACCAGGTAGATTACGCTAGCCCGATACAGTATCTGCAAGAATTTCGCCAGGAGTATGAAGAGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGACGACGGTGACGATGAGGAGCTGT]




>consensus_3509#1
CATTTGCTCTCGGGCGATCTGAGCTGGTTGGCACATTTGGTCAGCTCCTCAATACTGTGG
CTCAACAAAGCGAACCAGGAGGTTGACTCAGAGCATACGCCAGTACGTAGCCAGATGTAC
AAATTCTACAATCGCAATGCCAGCTCCATACGTGCGATCATGGTCGCGAACTGTCCATGG
TTAAGTGATGAAGCGGAAGTGAAAAAAGAAGGCGAAAAAGAAAAGGGCACCAGTGATGCA
GAGCAGAAATCGTCGGACGACTAACCAGGAACCAGTAGTGGCGATCGTCGGGCCGGAAAC
CCTCTGTCACACTACCAGATGAGCCAAGACGTCGATTCGGACGAGGAACAGGACGAAGGC
GTTGATGATGGCCAGGATCCCAGAGCAGCGGAAGATGTGCCGTACCAGCTGCTCGTTGGC
GACCAGGTAGATTACGCTAGCCCGATACAGTATCTGCAAGAATTTCGCCAGGAGTATGAA
GAGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGACGACGGTGACGAT
GAGGAGCTGT

consensusID : consensus_3509#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CCGAGGGGGAGGACGATTTAGAAAACATGTGTCCAAAGTATCTGATATTTTCCACCGGCTCAAAGACGTACACACCGCATCAGATCGGGTTCAAGCGCATCACGAGCGTCAACTTTCCGCGACGTATCGATCCGGGTCCATCGCTGCGTGAACGCATAGCGCTACGCGATCGGCAGCGCGAGCTACAGAATGAAGAGCCTCCGATGGAACCGAACTGGGCGAACTATGAGGCGGTGGCGGGACGATTCGACAAGGTGGACAAACTGATCGATCTGCACGGGCACATCATANGGATGGGGCTGAGTCCGGACCACCGCTATCTGTACGTGAATAGCCGACCGTGGCCGAAGAACTGTGTGATTCGTAACCCGCTCGATCCGCCCGCGATCGCACAGGAGATCGATATACAC]

[+] EMBL AGA282623            [CCGAGGGGGAGGACGATTTAGAAAACATGTGTCCAAAGTATCTGATATTTTCCACCGGCTCAAAGACGTACACACCGCATCAGATCGGGTTCAAGCGCATCACGAGCGTCAACTTTCCGCGACGTATCGATCCGGGTCCATCGCTGCGTGAACGCATAGCGCTACGCGATCGGCAGCGCGAGCTACAGAATGAAGAGCCTCCGATGGAACCGAACTGGGCGAACTATGAGGCGGTGGCGGGACGATTCGACAAGGTGGACAAACTGATCGATCTGCACGGGCACATCATANGGATGGGGCTGAGTCCGGACCACCGCTATCTGTACGTGAATAGCCGACCGTGGCCGAAGAACTGTGTGATTCGTAACCCGCTCGATCCGCCCGCGATCGCACAGGAGATCGATATACAC]




>consensus_3509#2
CCGAGGGGGAGGACGATTTAGAAAACATGTGTCCAAAGTATCTGATATTTTCCACCGGCT
CAAAGACGTACACACCGCATCAGATCGGGTTCAAGCGCATCACGAGCGTCAACTTTCCGC
GACGTATCGATCCGGGTCCATCGCTGCGTGAACGCATAGCGCTACGCGATCGGCAGCGCG
AGCTACAGAATGAAGAGCCTCCGATGGAACCGAACTGGGCGAACTATGAGGCGGTGGCGG
GACGATTCGACAAGGTGGACAAACTGATCGATCTGCACGGGCACATCATANGGATGGGGC
TGAGTCCGGACCACCGCTATCTGTACGTGAATAGCCGACCGTGGCCGAAGAACTGTGTGA
TTCGTAACCCGCTCGATCCGCCCGCGATCGCACAGGAGATCGATATACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3509#0      GCAGAATCGGCACGATGTGATTCGCCAGGAGTATGAGGNCCGTCTTACTACGAATCCTCG 60
consensus_3509#2      ------------------------------------------------------------
consensus_3509#1      ------------------------------------------------------------
                                                                                  

consensus_3509#0      GACGACTGTCTCGAGGACGACGAGGATGACGGTGACGATTAAGGAGCTGTCCGAGGGGAG 120
consensus_3509#2      --------------------------------------------------CCGAGGGGGA 10
consensus_3509#1      --CATTTGCTCTCGGGCGATCTGAGCTGGTTGGCACATTTGGTCAGCTCCTCAATACTGT 58
                                                                         * *      

consensus_3509#0      GACCGATTTA--------AAAACATGTGTCCCAAGTATCTGATATTTTCCAACGGGTCAA 172
consensus_3509#2      GGACGATTTAG-------AAAACATGTGTCCAAAGTATCTGATATTTTCCACCGGCTCAA 63
consensus_3509#1      GGCTCAACAAAGCGAACCAGGAGGTTGACTCAGAGCATACGCCAGTACGTAGCCAGATGT 118
                      *    *   *        *  *  *     *  ** **  *  * *    * *       

consensus_3509#0      AGAAAGTACACACCG-ATNAGATCGGGTTCA-AANCGCACTCACGAGGCGTCAAATTTC- 229
consensus_3509#2      AGAC-GTACACACCGCATCAGATCGGGTTCA-A-GCGCA-TCACGAG-CGTCAACTTTCC 118
consensus_3509#1      ACAAATTCTACAATC-GCAATGCCAGCTCCATACGTGCGATCATGGT-CGCGAACTGTCC 176
                      * *   *  ***       *   * * * ** *   **  *** *   **  ** * ** 

consensus_3509#0      GCGACA--GTATCGATCCGGGGTCCATCGCTGCGTGAACGCATAGACGCTACGCGATACG 287
consensus_3509#2      GCGAC---GTATCGATCCGGG-TCCATCGCTGCGTGAACGCATAG-CGCTACGCGAT-CG 172
consensus_3509#1      ATGGTTAAGTGATGAAGCGGA----AGTGAAAAAAGAAGGCGAAAAAGAAAAG-GGCACC 231
                        *     **   **  ***     *  *      *** **  *   *  * * *   * 

consensus_3509#0      GGAGACGCGAGCTACAGAATGAAGAGCCTCCGAGTGGAACCGAACTGGGGCGAACTATGA 347
consensus_3509#2      GCAG-CGCGAGCTACAGAATGAAGAGCCTCCGA-TGGAACCGAACTGGG-CGAACTATGA 229
consensus_3509#1      AGTGATGCAGAGCAGAAATCGTCGGACGACTAACCAGGAACCAGTAGTGGCGATCGTCGG 291
                         *  **     * * *  *  *  *  *  *   * * * *   * * *** *   * 

consensus_3509#0      A-----GGCGGTGTGCGGGACGATTCGACAACGGTGGACAACAACTGATTCGATCTGGAC 402
consensus_3509#2      ------GGCGGTG-GCGGGACGATTCGACAA-GGTGGACAA--ACTGAT-CGATCTGCAC 278
consensus_3509#1      GCCGGAAACCCTCTGTCACACTACCAGATGAGCCAAGACGTCGATTCGGACGAGGAACAG 351
                              *  *  *    ** *   **  *     ***    * *    ***     * 

consensus_3509#0      GGGCACCACTCATAGGATGGGGCTGAGTNCGGAGCACCGCGTATCTGTAACGTGAACAGC 462
consensus_3509#2      GGGCACATCATAN-GGATGGGGCTGAGTCCGGACCACCGC-TATCTGTA-CGTGAATAGC 335
consensus_3509#1      GACGAAGGCGTTGATGATGGCCAGGATCCCAGAGCAGCGG-AAGATGTGCCGT-ACCAGC 409
                      *   *   *      *****    **   * ** ** **   *  ***  *** *  ***

consensus_3509#0      -GACCGTGGGCGGAAAGAACTGTGGTTGATTCGTAAACACCGGCGTCGATNCGGGCCGCG 521
consensus_3509#2      CGACCGTGGCCG--AAGAACTGTG--TGATTCGTAA---CCCGC-TCGATCCGC-CCGCG 386
consensus_3509#1      TGCTCGTTGGCG------ACCAGG--TAGATTACGCTAGCCCGATACAGTATCTGCAAGA 461
                       *  *** * **      **   *  *   *        ** *   *  *     *    

consensus_3509#0      ATCGGCACAGGAGATCGGNATATACCACGGTGAATAGACTTTGGATGAC-GCTTAAAGAA 580
consensus_3509#2      ATCG-CACAGGAGATCGATATACAC----------------------------------- 410
consensus_3509#1      ATTTCGCCAGGAGTATGAAGAGTCTTACTACGAAT---CCTCGGACGACTGTCTCGAGGA 518
                      **     ******   *                                           

consensus_3509#0      ACGTGGGGCNAAGAATNGNCTTGCGAA----- 607
consensus_3509#2      --------------------------------
consensus_3509#1      CGACGAGGACGACGGTGACGATGAGGAGCTGT 550