These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCAATTTTCATCCCTCACAACAGTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACAAGATGATGGACAACATTAACCAGTTCCAAAAGGCGTGCATCAAGTACGGTGTGGCCGACGTCGACCTCTTCCAGACGACCGATCTGTGGGATCGCAAAAACGTTGCCCTCGTCACGACGACCATCTTTGCCGTTGGCCGAGCGTGCTACAAGCATCCGGAGTTCCGCGGCCCGTACCTGGGACCCCGGCCGGCCGAGG] [+] EMBL BM655348 [CCGCAATTTTCATCCCTCACAACAGTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACAAGATGATGGACAACATTAACCAGTTCCAAAAGGCGTGCATCAAGTACGGTGTGGCCGACGTCGACCTCTTCCAGACGACCGATCTGTGGGATCGCAAAAACGTTGCCCTCGTCACGACGACCATCTTTGCCGTTGGCCGAGCGTGCTACAAGCATCCGGAGTTCCGCGGCCCGTACCTGGGACCCCGGCCGGCCGAGG] consensusID : consensus_3515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [CCGGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTATTTGCCGCTGCCTGCAATCACTGCCC---TGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGCCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACCAGATGATGGACAACATTAATCAGTTCC] [+] EMBL BM581549 [CCGGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTATTTGCCGCTGCCTGCAATCACTGCCC TGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGCCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACCAGATGATGGACAACATTAATCAGTTCC] [+] EMBL BX624168 [ aGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTATTTGCCGCTGCCTGCAATCACTGCCCGTATGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACAAGATGATGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3515#0 ------------------------------------------------------------ consensus_3515#1 CCGGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTAT 60 consensus_3515#0 CCGCAATTTTCATCCCTCACAACAGTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAA 60 consensus_3515#1 TTGCCGCTGCCTGCAATCACTGCCCTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAA 120 ** * * * **** * *********************************** consensus_3515#0 GCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCA 120 consensus_3515#1 GCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCA 180 ************************************************************ consensus_3515#0 GCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAA 180 consensus_3515#1 GCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAA 240 ************************************************************ consensus_3515#0 CAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGA 240 consensus_3515#1 CAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGA 300 ************************************************************ consensus_3515#0 CTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTC 300 consensus_3515#1 CTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTC 360 ************************************************************ consensus_3515#0 GCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATC 360 consensus_3515#1 GCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATC 420 ************************************************************ consensus_3515#0 GGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTC 420 consensus_3515#1 GGGGAAAAGTTTCCGGCCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTC 480 **************** ******************************************* consensus_3515#0 TGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGC 480 consensus_3515#1 TGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGC 540 ************************************************************ consensus_3515#0 GACTACAAGATGATGGACAACATTAACCAGTTCCAAAAGGCGTGCATCAAGTACGGTGTG 540 consensus_3515#1 GACTACCAGATGATGGACAACATTAATCAGTTCC-------------------------- 574 ****** ******************* ******* consensus_3515#0 GCCGACGTCGACCTCTTCCAGACGACCGATCTGTGGGATCGCAAAAACGTTGCCCTCGTC 600 consensus_3515#1 ------------------------------------------------------------ consensus_3515#0 ACGACGACCATCTTTGCCGTTGGCCGAGCGTGCTACAAGCATCCGGAGTTCCGCGGCCCG 660 consensus_3515#1 ------------------------------------------------------------ consensus_3515#0 TACCTGGGACCCCGGCCGGCCGAGG 685 consensus_3515#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||