cluster # 3521

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Anopheles gambiae
cluster # 3521 cluster # 3521 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3521#0 length = 665 sequences # 2

consensus_3521#1 length = 614 sequences # 1

consensusID : consensus_3521#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [CCGAGCAGCCCTGTGCGGAGCGAGCAATTTATTTTCTAAAGATTGCCATTGTATTTGGAGAAAAAACCGTTGCTTTTATCTTAGTTGTTCGTGCATTGGGATTCTTTTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCACAATCCAGCTAACGCTGATCTGATTGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTAGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTCATGGAAACGATGATGCCCAAGAAGAACGCCAGCGAGCTGAGATACGTCAGCTTTACCACGTGGGGCACGGCA]

[+] EMBL BM640146             [CCGAGCAGCCCTGTGCGGAGCGAGCAATTTATTTTCTAAAGATTGCCATTGTATTTGGAGAAAAAACCGTTGCTTTTATCTTAGTTGTTCGTGCATTGGGATTCTTTTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCACAATCCAGCTAACGCTGATCTGATTGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTAGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGT                                                                                                             ]
[+] EMBL BM646596             [                           ccgATTTTCTAAAGATTGCCATTGTATTTGGAGAAAAAACCGTTGCTTTTATCTTAGTTGTTCGTGCATTGGGATTCTTTTCGAGTTAAATGAGTCCGTTAAGCGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCACAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTCATGGAAACGATGATGCCCAAGAAGAACGCCAGCGAGCTGAGATACGTCAGCTTTACCACGTGGGGCACGGCA]




>consensus_3521#0
CCGAGCAGCCCTGTGCGGAGCGAGCAATTTATTTTCTAAAGATTGCCATTGTATTTGGAG
AAAAAACCGTTGCTTTTATCTTAGTTGTTCGTGCATTGGGATTCTTTTCGAGTTAAATGA
GTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCC
ACGCCGACACGACACGGTACAATGTTAGCTTTGATGAATTGCACAGATGCAAGCAGCACA
ACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCACA
ATCCAGCTAACGCTGATCTGATTGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACG
GTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTAG
GCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCA
CGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCA
ACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTCATGGAAA
CGATGATGCCCAAGAAGAACGCCAGCGAGCTGAGATACGTCAGCTTTACCACGTGGGGCA
CGGCA

consensusID : consensus_3521#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGGTAAGTGGCGACTGCGAATATCACCTCCCAGCATCGCTTCAAGCTTCAATATGCTAATAAGCTGCTTATCACCTACATCCCGGCCGACCACAACTGCATAGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCATAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTC]

[+] EMBL BM615023             [CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATGGTAAGTGGCGACTGCGAATATCACCTCCCAGCATCGCTTCAAGCTTCAATATGCTAATAAGCTGCTTATCACCTACATCCCGGCCGACCACAACTGCATAGAATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGCTGCACGAGCTAGACCATCATAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGGTGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGACTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTACCGGTGAACCGTTC]




>consensus_3521#1
CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTG
CAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTAC
AATGTTAGCTTTGATGGTAAGTGGCGACTGCGAATATCACCTCCCAGCATCGCTTCAAGC
TTCAATATGCTAATAAGCTGCTTATCACCTACATCCCGGCCGACCACAACTGCATAGAAT
TGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCAAGC
TGCACGAGCTAGACCATCATAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGGTGT
ACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCACCGA
CTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCGGAC
AGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATCCAC
TTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATCTTA
CCGGTGAACCGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3521#0      ----------CCGAGCAGCCCTGTGCGGAGCGAGCAATTTATTTTCTAAAGATTGCCATT 50
consensus_3521#1      CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTG 60
                                  * ** * *  *** *  * *   ***   *    ***   ** ** * 

consensus_3521#0      --GTATTTGGAGAAAAAACCGTTGCTTTTATCTTAGTTGTTCGT------------GCAT 96
consensus_3521#1      CAGGGTGTTGTCCTCCTGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTAC 120
                        *  * * *            ***** *   * ***    **             * * 

consensus_3521#0      TGGGATTCTTTTCGAGTTAAATGAGTCCGTTAAGTGTTACCGTGCAGGGTGTTGTCCTCC 156
consensus_3521#1      AATGTTAGCTTTGATGGTAAGTGGCGACTGCGAATATCACCTCCCAG--CATCG-CTTCA 177
                         * *   ***   * *** **    *    * * * ***   ***    * * * ** 

consensus_3521#0      TGTTAGTGCTTGTTATTGAGTGCCACGCCGACACGACACGGTACAATGTTAGCTTTGATG 216
consensus_3521#1      AGCTTCAATATGCTAATAAGCTGCTTATCACCTACATCCCGGCCGACCACAACTGCATAG 237
                       * *      ** ** * **   *    *  *   *  * *  * *    * **     *

consensus_3521#0      AATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCA 276
consensus_3521#1      AATTGCACAGATGCAAGCAGCACAACGCTATCAATGGGTACAACTATCGGGCGTTCTTCA 297
                      ************************************************************

consensus_3521#0      AGCTGCACGAGCTAGACCATCACAATCCAGCTAACGCTGATCTGATTGTCGATCTGCTGG 336
consensus_3521#1      AGCTGCACGAGCTAGACCATCATAATCCAGCTAACGCTGATCTGATCGTCGATCTGCTGG 357
                      ********************** *********************** *************

consensus_3521#0      TGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCAC 396
consensus_3521#1      TGTACGTGCTGGCTGCCCGCGACGGTCACATCCTGCTATCGGAACAGAACAAAACGGCAC 417
                      ************************************************************

consensus_3521#0      CGACTGCATTGGAAATAGTGCTAGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCG 456
consensus_3521#1      CGACTGCATTGGAAATAGTGCTCGGCGGCGGTGGCAACACATTTTCACAGATACGCTTCG 477
                      ********************** *************************************

consensus_3521#0      GACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATC 516
consensus_3521#1      GACAGAAGGGTTCGCCGTTGCGCACGAAGGCGAGTGCTGGACTGCTGTCACCGATTGATC 537
                      ************************************************************

consensus_3521#0      CACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATC 576
consensus_3521#1      CACTTCCGGTGCGGGTACGTATCAACACCGAAGGACAGGTCAGGGTGTATGCAGGCAATC 597
                      ************************************************************

consensus_3521#0      TTACCGGTGAACCGTTCATGGAAACGATGATGCCCAAGAAGAACGCCAGCGAGCTGAGAT 636
consensus_3521#1      TTACCGGTGAACCGTTC------------------------------------------- 614
                      *****************                                           

consensus_3521#0      ACGTCAGCTTTACCACGTGGGGCACGGCA 665
consensus_3521#1      -----------------------------