These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 970 fasta sequence [TACGGCATGGAGAAGTGCTCGCTGCTGCGGCAGCAGATCGAGCAGAACCGGCTGAAGATGGCGGAGCGCGAGTCGAGCCAGCGGGAGATCGAGGAGAAGGTGATCGAAATCAAGCACAAGCTTGAGGCGACCCAGCAAACGCTGGTGGGCCGGTCGAGCACGGGCCTGGCGGATATCACGGCGGATCGATCGTTGGGCGATCCGCCGGACAGGTTGTGGCGCTCGGTCAGCAGCCACTCGTTTCTGGACGCTGAGATGACGGGGGTGGGAGCGAGGGTGTCGAGCTCCACGCCGGTGCGGCAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGACAGCGTGCGGCAGGCCCAGGTCAAGCGGAAAAGCGACGAAATGCTCGAACGCAAGGTGACGTCACTGGAGGACGAGCTGCACGAGAAGGAGCGCATTATTGATGAGCAGCTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAACTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCTAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGACCGAAACCGCTGTTCCCCGGTCGGCCGACGAGGAGCTCGAGACGGAAGCGGCCAAGCTCCGGCAGCAGCT] [+] EMBL AGA283795 [TACGGCATGGAGAAGTGCTCGCTGCTGCGGCAGCAGATCGAGCAGAACCGGCTGAAGATGGCGGAGCGCGAGTCGAGCCAGCGGGAGATCGAGGAGAAGGTGATCGAAATCAAGCACAAGCTTGAGGCGACCCAGCAAACGCTGGTGGGCCGGTCGAGCACGGGCCTGGCGGATATCACGGCGGATCGATCGTTGGGCGATCCGCCGGACAGGTTGTGGCGCTCGGTCAGCAGCCACTCGTTTCTGGACGCTGAGATGACGGGGGTGGGAGCGAGGGTGTCGAGCTCCACGCCGGTGCGGCAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGA ] [+] EMBL BM588279 [ ccGGTGTCGAGCTCCACGCCGGTGCGGCAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGACAGCGTGCGGCAGGCCCAGGTCAAGCGGAAAAGCGACGAAATGCTCGAACGCAAGGTGACGTCACTGGAGGACGAGCTGCACGAGAAGGAGCGCATTATTGATGAGCAGCTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAACTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCTAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGACCGAAACCGCTGTTCCCCGGTCGGCCGACGAGGAGCTCGAGACGGAAGCGGCCAAGCTCCGGCAGCAGCT] consensusID : consensus_3574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGATTGTATTGTGAACTTTCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAGCTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCGAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGGCCGAAACCGCTGTTCCCCCGGT] [-] EMBL AGA285086 [CTCGGTGCACTGTCCCGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAGCTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCAGCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAAAAGAAAAGTAAAGCGCCAGATTGTATTGTGAACTTTCAGCACCCGCCCCCTTCTCGGAGGACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGCTGGCCGCGCACGAGCTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGTCGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCGAACGTGTCGGTGCTGCAGGAGAAGCTAAAGACGAGCGGGCCGAAACCGCTGTTCCCCCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3574#0 TACGGCATGGAGAAGTGCTCGCTGCTGCGGCAGCAGATCGAGCAGAACCGGCTGAAGATG 60 consensus_3574#1 ------------------------------------------------------------ consensus_3574#0 GCGGAGCGCGAGTCGAGCCAGCGGGAGATCGAGGAGAAGGTGATCGAAATCAAGCACAAG 120 consensus_3574#1 ------------------------------------------------------------ consensus_3574#0 CTTGAGGCGACCCAGCAAACGCTGGTGGGCCGGTCGAGCACGGGCCTGGCGGATATCACG 180 consensus_3574#1 ------------------------------------------------------------ consensus_3574#0 GCGGATCGATCGTTGGGCGATCCGCCGGACAGGTTGTGGCGCTCGGTCAGCAGCCACTCG 240 consensus_3574#1 ------------------------------------------------------------ consensus_3574#0 TTTCTGGACGCTGAGATGACGGGGGTGGGAGCGAGGGTGTCGAGCTCCACGCCGGTGCGG 300 consensus_3574#1 ------------------------------------------------------------ consensus_3574#0 CAGCTGCAGCACGACAGCGAGGAGCAATTCGACGACGAGCTGACCAAGTTCGAGGACAGC 360 consensus_3574#1 ------------------------------------------------------------ consensus_3574#0 GTGCGGCAGGCCCAGGTCAAGCGGAAAAGCGACGAAATGCTCGAACGCAAGGTGACGTCA 420 consensus_3574#1 ------------------------------------------------------------ consensus_3574#0 CTGGAGGACGAGCTGCACGAGAAGGAGCGCATTATTGATGAGCAGCTCGGTGCACTGTCC 480 consensus_3574#1 ---------------------------------------------CTCGGTGCACTGTCC 15 *************** consensus_3574#0 CGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAG 540 consensus_3574#1 CGGCTGGTGAACGGTTTGCTGGATGAGGACAACGCACCCGAGCCCGAACTGGTGGGCGAG 75 ************************************************************ consensus_3574#0 CTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCA 600 consensus_3574#1 CTGCACAACCTGCAGATGAAGTTGCTGCAACAAAGCTACCACATTTCGAACGACGAAGCA 135 ************************************************************ consensus_3574#0 GCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAA 660 consensus_3574#1 GCATCACGGCTGCTCGAGTCCTACGGATACGATCCACTGCAAAGGGCTAGCGAGTGTAAA 195 ************************************************************ consensus_3574#0 AAGAAAAGTAAAGCGCCAG--------------------CACCCGCCCCCTTCTCGGAGG 700 consensus_3574#1 AAGAAAAGTAAAGCGCCAGATTGTATTGTGAACTTTCAGCACCCGCCCCCTTCTCGGAGG 255 ******************* ********************* consensus_3574#0 ACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGC 760 consensus_3574#1 ACACGAACGCGCAGCAGCTGCACGATGCGCTGGCGAAAATTGACACGCTCGAGCAGGCGC 315 ************************************************************ consensus_3574#0 TGGCCGCGCACGAACTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGT 820 consensus_3574#1 TGGCCGCGCACGAGCTCGAAGCGGAGCGCATGAACCAGCAGATGGACGAGCTGCGCCAGT 375 ************* ********************************************** consensus_3574#0 CGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCTAACGTGTCGGTGCTGCAGG 880 consensus_3574#1 CGCTGGAGGAGAAAACGATCGAGCTGAACGTGATGACGGCGAACGTGTCGGTGCTGCAGG 435 **************************************** ******************* consensus_3574#0 AGAAGCTAAAGACGAGCGGACCGAAACCGCTGTTCCCCGGTCGGCCGACGAGGAGCTCGA 940 consensus_3574#1 AGAAGCTAAAGACGAGCGGGCCGAAACCGCTGTTCCCCCGGT------------------ 477 ******************* ****************** * consensus_3574#0 GACGGAAGCGGCCAAGCTCCGGCAGCAGCT 970 consensus_3574#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||