These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3588#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 590 fasta sequence [TTTTTTTTGGGAACGCACCTGAGCGATGGACTGTACAACACATCACAAGTACCGCTAGCCAACGGGACCCAGACTGAGGCATCATCAGCGAGCCAGTTTCAAAGGACTGCTGAGCTAAACTATCAGTTGTGATACAATTGTTGCTTTCCAGCGTGTGTATTAGAATTAAATACTTCCCTCCATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTAGTTAATCTTGATGGGCCCTTTTTAAGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAGATTGATACTGTATTTTTTGCGACTGATATAGCAACGTTTTAATCACATGC] [+] EMBL AGA283938 [TTTTTTTTGGGAACGCACCTGAGCGATGGACTGTACAACACATCACAAGTACCGCTAGCCAACGGGACCCAGACTGAGGCATCATCAGCGAGCCAGTTTCAAAGGACTGCTGAGCTAAACTATCAGTTGTGATACAATTGTTGCTTTCCAGCGTGTGTATTAGAATTAAATACTTCCCTCCATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTG ] [-] EMBL AGA285234 [ TATTAGAATTAAATACTTCCCTCCATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTAGTTAATCTTGATGGGCCCTTTTTAAGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAGATTGATACTGTATTTTTTGCGACTGATATAGCAACGTTTTAATCACATGC] consensusID : consensus_3588#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CCGACCCCAGTGGGGCAGTTGATTATCTATCGCGGTGTTGATAATGGAATTCAATTTTCTTCTCGATGGCGTTTTTTTCAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTCGCTAATCTTGATGGGCTCTTTTACGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAGATTGATACTGTATGTTTTACGACTGATATAGCAACGTTTTAATCACATGCACAAATCGGTTATTTGTACAGTGTA] [+] EMBL BM601017 [CCGACCCCAGTGGGGCAGTTGATTATCTATCGCGGTGTTGATAATGGAATTCAATTTTCTTCTCGATGGCGTTTTTTTCAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTCGCTAATCTTGATGGGCTCTTTTACGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAGATTGATACTGTATGTTTTACGACTGATATAGCAACGTTTTAATCACATGCACAAATCGGTTATTTGTACAGTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3588#0 TTTTTTTTGGGAACGCACCTGAGCGATGGACTGTACAACACATCACAAGTACCGCTAGCC 60 consensus_3588#1 ------------------------------------------------------------ consensus_3588#0 AACGGGACCCAGACTGAGGCATCATCAGCGAGCCAGTTTCAAAGGACTGCTGAGCTAAAC 120 consensus_3588#1 --------------------------------CCGACCCCAGTGGG-----GCAGTTGAT 23 ** ** ** * * * consensus_3588#0 TATCAGTTGTGATACAATTGTTGCTTTCCAGCGTGTGTATTAGAATTAAATACTTCCCTC 180 consensus_3588#1 TATCTATCGCGGTGTTGATAATGGAATTCAATTTTCTTCTCG---------ATGGCGTTT 74 **** * * * * * ** * ** * * * * * * consensus_3588#0 CATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGC 240 consensus_3588#1 TTTTCAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGC 134 ** ******************************************************* consensus_3588#0 TACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATT 300 consensus_3588#1 TACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATT 194 ************************************************************ consensus_3588#0 TAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGT 360 consensus_3588#1 TAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGT 254 ************************************************************ consensus_3588#0 GCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTAGTT 420 consensus_3588#1 GCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTCGCT 314 ******************************************************** * * consensus_3588#0 AATCTTGATGGGCCCTTTTTAAGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTT 480 consensus_3588#1 AATCTTGATGGGCTCTTTT-ACGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTT 373 ************* ***** * ************************************** consensus_3588#0 TGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAG 540 consensus_3588#1 TGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAG 433 ************************************************************ consensus_3588#0 ATTGATACTGTATTTTTTGCGACTGATATAGCAACGTTTTAATCACATGC---------- 590 consensus_3588#1 ATTGATACTGTATGTTTTACGACTGATATAGCAACGTTTTAATCACATGCACAAATCGGT 493 ************* **** ******************************* consensus_3588#0 --------------- consensus_3588#1 TATTTGTACAGTGTA 508 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||