cluster # 3602

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Anopheles gambiae
cluster # 3602 cluster # 3602 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3602#0 length = 648 sequences # 1

consensus_3602#1 length = 422 sequences # 2

consensusID : consensus_3602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CAGTCTGTGTGTGCGAACGTGCTTTTGCGTGTGTGTATTGTGCTTTTCTAACAAGCAAACGAGCTCCTCCAACACACACCGATGATCGGTCGCTGGCCGGTTTACAGCGCTTTGAATAAAACAAAAACCGAGCGAGATAGTGAAAAGAAGGTTTATGCTTACACGCTCCCTCGCGCGTGCCAGTGCGTGTGTGTGTGTGTAGCTGTGATTGTGTGCGGTAGAAAATGGTACCGAAAGTGTTGATCCCCGTACGGCTGCCGGTGCTTTACGCTTCCCATCGCAACGAGTAAAGTGCAGAAAAAGGAATGAAAAGCGTGTGAAACAACCCCCGCCCCCCTCTGCGGTGCTTTCGATTGTGTTCTGTGCGTGAGTGTGTCTGTGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGTTCGTCGAGTTGCACGCGTTTTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGCGGCACAAAGCAGCAAGCGAGTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCGTCAACCGCCTCTGTGTTCTCAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGTACGCACAGATTCCTTGTCGAGTGTTTGGGCCAGAATCGGGCCATAAAT]

[+] EMBL BX609395             [CAGTCTGTGTGTGCGAACGTGCTTTTGCGTGTGTGTATTGTGCTTTTCTAACAAGCAAACGAGCTCCTCCAACACACACCGATGATCGGTCGCTGGCCGGTTTACAGCGCTTTGAATAAAACAAAAACCGAGCGAGATAGTGAAAAGAAGGTTTATGCTTACACGCTCCCTCGCGCGTGCCAGTGCGTGTGTGTGTGTGTAGCTGTGATTGTGTGCGGTAGAAAATGGTACCGAAAGTGTTGATCCCCGTACGGCTGCCGGTGCTTTACGCTTCCCATCGCAACGAGTAAAGTGCAGAAAAAGGAATGAAAAGCGTGTGAAACAACCCCCGCCCCCCTCTGCGGTGCTTTCGATTGTGTTCTGTGCGTGAGTGTGTCTGTGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGTTCGTCGAGTTGCACGCGTTTTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGCGGCACAAAGCAGCAAGCGAGTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCGTCAACCGCCTCTGTGTTCTCAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGTACGCACAGATTCCTTGTCGAGTGTTTGGGCCAGAATCGGGCCATAAAT]




>consensus_3602#0
CAGTCTGTGTGTGCGAACGTGCTTTTGCGTGTGTGTATTGTGCTTTTCTAACAAGCAAAC
GAGCTCCTCCAACACACACCGATGATCGGTCGCTGGCCGGTTTACAGCGCTTTGAATAAA
ACAAAAACCGAGCGAGATAGTGAAAAGAAGGTTTATGCTTACACGCTCCCTCGCGCGTGC
CAGTGCGTGTGTGTGTGTGTAGCTGTGATTGTGTGCGGTAGAAAATGGTACCGAAAGTGT
TGATCCCCGTACGGCTGCCGGTGCTTTACGCTTCCCATCGCAACGAGTAAAGTGCAGAAA
AAGGAATGAAAAGCGTGTGAAACAACCCCCGCCCCCCTCTGCGGTGCTTTCGATTGTGTT
CTGTGCGTGAGTGTGTCTGTGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGT
TCGTCGAGTTGCACGCGTTTTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGC
GGCACAAAGCAGCAAGCGAGTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCG
TCAACCGCCTCTGTGTTCTCAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGT
ACGCACAGATTCCTTGTCGAGTGTTTGGGCCAGAATCGGGCCATAAAT

consensusID : consensus_3602#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 422
fasta sequence

                              [GCGCCCGCCCCCATTTTTTTTTTTTTTTTTTCGATTGTGTTCTGTGCGTGAGTGTGTCTGTGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGTTCGTCGAGTTGCACGCGTTTTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGCGGCACAAAGCAGCAAGCGAGTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCGTCAACCGCCTCTGTGTTCTCAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGTACGCACAGATTCCTTGTCGAGTGTTTGGGCCAGAATCGGGCCATAAATCTTGAAACTTGAAGAATCTCGCCAGCTTTGACCGATAAGAAAAAACGTTCCTGCCTGTTTGTGTGGCAGTAACGAAACCGCCGCACGCCAAAA]

[-] EMBL AGA285692            [GCGCCCGCCCCCATTTTTTTTTTTTTTTTTTCGATTGTGTTCTGTGCGTGAGTGTGTCTGTGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGTTCGTCGAGTTGCACGCGTTTTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGCGGCACAAAGCAGCAAGCGAGTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCGTCAACCGCCTCTGTGTTCTCAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGTACGCACAGATTCCTTGTCGAGTGTTTGGGCCAGAATCGGGCCATAAATCTTGAAACTTGAAGAATCTCGCCAGCTTTGACCGATAAGAAAAAACGTTCCTGCCTGTTTGTGTGGCAGTAACGAAACCGCCGCACGCCAAAA]
[+] EMBL AGA284386            [                       TTTTTTTTCGATTGTGTTCTGTGCGTGAGTGTGTCTGTGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGTTCGTCGAGTTGCACGCGTTTTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGCGGCACAAAGCAGCAAGCGAGTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCGTCAACCGCCTCTGTGTTCTCAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGTACGCACAGATTCCTTGTCGAGTGTTTGGGCCAAAATCGGGCCATAAATCTTGAAACTTGAAGAATCTCGCCAGCTTTGACCGATAAGAAAAAACGTTCCTGCCTGTTTGTGTGGCAGTAACGAAACCGCCGCACGCCAAAA]




>consensus_3602#1
GCGCCCGCCCCCATTTTTTTTTTTTTTTTTTCGATTGTGTTCTGTGCGTGAGTGTGTCTG
TGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGTTCGTCGAGTTGCACGCGTT
TTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGCGGCACAAAGCAGCAAGCGA
GTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCGTCAACCGCCTCTGTGTTCT
CAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGTACGCACAGATTCCTTGTCG
AGTGTTTGGGCCAGAATCGGGCCATAAATCTTGAAACTTGAAGAATCTCGCCAGCTTTGA
CCGATAAGAAAAAACGTTCCTGCCTGTTTGTGTGGCAGTAACGAAACCGCCGCACGCCAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3602#0      CAGTCTGTGTGTGCGAACGTGCTTTTGCGTGTGTGTATTGTGCTTTTCTAACAAGCAAAC 60
consensus_3602#1      ------------------------------------------------------------
                                                                                  

consensus_3602#0      GAGCTCCTCCAACACACACCGATGATCGGTCGCTGGCCGGTTTACAGCGCTTTGAATAAA 120
consensus_3602#1      ------------------------------------------------------------
                                                                                  

consensus_3602#0      ACAAAAACCGAGCGAGATAGTGAAAAGAAGGTTTATGCTTACACGCTCCCTCGCGCGTGC 180
consensus_3602#1      ------------------------------------------------------------
                                                                                  

consensus_3602#0      CAGTGCGTGTGTGTGTGTGTAGCTGTGATTGTGTGCGGTAGAAAATGGTACCGAAAGTGT 240
consensus_3602#1      ------------------------------------------------------------
                                                                                  

consensus_3602#0      TGATCCCCGTACGGCTGCCGGTGCTTTACGCTTCCCATCGCAACGAGTAAAGTGCAGAAA 300
consensus_3602#1      ------------------------------------------------------------
                                                                                  

consensus_3602#0      AAGGAATGAAAAGCGTGTGAAACAACCCCCGCCCCCCTCTGCGGTGCTTTCGATTGTGTT 360
consensus_3602#1      ------------------GCGCCCGCCCCCATTTTTTTTT-TTTTTTTTTCGATTGTGTT 41
                                        *   *  *****       * *    *  *************

consensus_3602#0      CTGTGCGTGAGTGTGTCTGTGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGT 420
consensus_3602#1      CTGTGCGTGAGTGTGTCTGTGAGAAAAGGCGTCGCTCACGCATTGTGCGTGGTGTGAGGT 101
                      ************************************************************

consensus_3602#0      TCGTCGAGTTGCACGCGTTTTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGC 480
consensus_3602#1      TCGTCGAGTTGCACGCGTTTTTTGTTGTTGTTCCTGCAAGCAGAGAGCGGCGCACTGAGC 161
                      ************************************************************

consensus_3602#0      GGCACAAAGCAGCAAGCGAGTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCG 540
consensus_3602#1      GGCACAAAGCAGCAAGCGAGTGAGAGTGTGCGTGCGCGCGCGCGCGTGTGTGTGTGTGCG 221
                      ************************************************************

consensus_3602#0      TCAACCGCCTCTGTGTTCTCAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGT 600
consensus_3602#1      TCAACCGCCTCTGTGTTCTCAGGGTTTTTTTTTTCTACTAATGTGAAAAGCAATCCAAGT 281
                      ************************************************************

consensus_3602#0      ACGCACAGATTCCTTGTCGAGTGTTTGGGCCAGAATCGGGCCATAAAT------------ 648
consensus_3602#1      ACGCACAGATTCCTTGTCGAGTGTTTGGGCCAGAATCGGGCCATAAATCTTGAAACTTGA 341
                      ************************************************            

consensus_3602#0      ------------------------------------------------------------
consensus_3602#1      AGAATCTCGCCAGCTTTGACCGATAAGAAAAAACGTTCCTGCCTGTTTGTGTGGCAGTAA 401
                                                                                  

consensus_3602#0      ---------------------
consensus_3602#1      CGAAACCGCCGCACGCCAAAA 422