cluster # 3624

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Anopheles gambiae
cluster # 3624 cluster # 3624 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3624#0 length = 758 sequences # 1

consensus_3624#1 length = 499 sequences # 2

consensusID : consensus_3624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 758
fasta sequence

                              [GCACCGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCCGATTCGGTTCAGTTTCAATTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGAGGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCGGAAGCACTGCTGCAGCACCCAAAGATGGTGGAGCTAATGCAGTCCGGCGAGCGGTTTGACGCCGTCATCGTGGAATCGTTCGCCAGCGAGGTGCTGTACGGGCTGGCGGAACATTTCGGTGGACAGTTGTTTGTGTTCTCGCCGTTCGGTGCGTCCATGTGGACGAACGAGCTGGTCGGTACGCCGTACCCGTACTCGTACATTCCGCACACCTTCCTGAGCTACACGAACGAGATGTCGTTCTGGCAGCGGTTCACGAACGCACTCGTCGGCCATGCGGACAAGCTGTACTACCGGTGCGTGTTTCTGCCCCAGCAGGAAGCGATGTACCGCCGGTTCTTCCCGAACGCGAAGCTCACCTTCCAGCAAACGCT]

[+] EMBL BX607525             [GCACCGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCCGATTCGGTTCAGTTTCAATTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGAGGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCGGAAGCACTGCTGCAGCACCCAAAGATGGTGGAGCTAATGCAGTCCGGCGAGCGGTTTGACGCCGTCATCGTGGAATCGTTCGCCAGCGAGGTGCTGTACGGGCTGGCGGAACATTTCGGTGGACAGTTGTTTGTGTTCTCGCCGTTCGGTGCGTCCATGTGGACGAACGAGCTGGTCGGTACGCCGTACCCGTACTCGTACATTCCGCACACCTTCCTGAGCTACACGAACGAGATGTCGTTCTGGCAGCGGTTCACGAACGCACTCGTCGGCCATGCGGACAAGCTGTACTACCGGTGCGTGTTTCTGCCCCAGCAGGAAGCGATGTACCGCCGGTTCTTCCCGAACGCGAAGCTCACCTTCCAGCAAACGCT]




>consensus_3624#0
GCACCGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCCGATTCGGTTCAGTTTCAATTTTT
TGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCAAGGGGCACGAATT
CTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAA
GCACTGCTGGACGCTGGCCACGAGGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCA
CCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCC
GGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTAC
AGTGAGATTGGCCCACAAGCGTCGGAAGCACTGCTGCAGCACCCAAAGATGGTGGAGCTA
ATGCAGTCCGGCGAGCGGTTTGACGCCGTCATCGTGGAATCGTTCGCCAGCGAGGTGCTG
TACGGGCTGGCGGAACATTTCGGTGGACAGTTGTTTGTGTTCTCGCCGTTCGGTGCGTCC
ATGTGGACGAACGAGCTGGTCGGTACGCCGTACCCGTACTCGTACATTCCGCACACCTTC
CTGAGCTACACGAACGAGATGTCGTTCTGGCAGCGGTTCACGAACGCACTCGTCGGCCAT
GCGGACAAGCTGTACTACCGGTGCGTGTTTCTGCCCCAGCAGGAAGCGATGTACCGCCGG
TTCTTCCCGAACGCGAAGCTCACCTTCCAGCAAACGCT

consensusID : consensus_3624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 499
fasta sequence

                              [ATCCCCGAGGTNNAACGGCACGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCGATTCGGTTCAGTTTCAATTTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTA-GCCTACTGCTGCTGGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGANGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCCGAAGCACTGCTGCAGCACCCA]

[+] EMBL AL934502             [ATCCCCGAGGTNNAACGGCACGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCGATTCGGTTCAGTTTCAATTTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTA GCCTACTGCTGCTGGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGANGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTG                                                ]
[+] EMBL AGA285147            [                                                                                                              CTTAACCATCGCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTAGGCCTACTGCTGCTGGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGC        GACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCCGAAGCACTGCTGCAGCACCCA]




>consensus_3624#1
ATCCCCGAGGTNNAACGGCACGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCGATTCGGT
TCAGTTTCAATTTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATC
GCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTAGCCTACTGCTGCT
GGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCG
TTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGANGT
GACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCT
ACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAG
TGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCCGA
AGCACTGCTGCAGCACCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3624#0      -----------------GCACCGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCCGATTCG 43
consensus_3624#1      ATCCCCGAGGTNNAACGGCAC-GTTCGGTCGGGTGGGTGACTAGTGTCCTGTC-GATTCG 58
                                       **** ******************************* ******

consensus_3624#0      GTTCAGTTTCAATTTTTT-GTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCA 102
consensus_3624#1      GTTCAGTTTCAATTTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCA 118
                      ****************** *****************************************

consensus_3624#0      TCGC-------------------------------------------------------- 106
consensus_3624#1      TCGCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTAGCCTACTGCTG 178
                      ****                                                        

consensus_3624#0      ----------------------AAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGC 144
consensus_3624#1      CTGGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGC 238
                                            **************************************

consensus_3624#0      CGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGAG 204
consensus_3624#1      CGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGAN 298
                      *********************************************************** 

consensus_3624#0      GTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATT 264
consensus_3624#1      GTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATT 358
                      ************************************************************

consensus_3624#0      CTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAA 324
consensus_3624#1      CTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAA 418
                      ************************************************************

consensus_3624#0      AGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCG 384
consensus_3624#1      AGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCC 478
                      *********************************************************** 

consensus_3624#0      GAAGCACTGCTGCAGCACCCAAAGATGGTGGAGCTAATGCAGTCCGGCGAGCGGTTTGAC 444
consensus_3624#1      GAAGCACTGCTGCAGCACCCA--------------------------------------- 499
                      *********************                                       

consensus_3624#0      GCCGTCATCGTGGAATCGTTCGCCAGCGAGGTGCTGTACGGGCTGGCGGAACATTTCGGT 504
consensus_3624#1      ------------------------------------------------------------
                                                                                  

consensus_3624#0      GGACAGTTGTTTGTGTTCTCGCCGTTCGGTGCGTCCATGTGGACGAACGAGCTGGTCGGT 564
consensus_3624#1      ------------------------------------------------------------
                                                                                  

consensus_3624#0      ACGCCGTACCCGTACTCGTACATTCCGCACACCTTCCTGAGCTACACGAACGAGATGTCG 624
consensus_3624#1      ------------------------------------------------------------
                                                                                  

consensus_3624#0      TTCTGGCAGCGGTTCACGAACGCACTCGTCGGCCATGCGGACAAGCTGTACTACCGGTGC 684
consensus_3624#1      ------------------------------------------------------------
                                                                                  

consensus_3624#0      GTGTTTCTGCCCCAGCAGGAAGCGATGTACCGCCGGTTCTTCCCGAACGCGAAGCTCACC 744
consensus_3624#1      ------------------------------------------------------------
                                                                                  

consensus_3624#0      TTCCAGCAAACGCT 758
consensus_3624#1      --------------