|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence
[CCGGTCGCGCTACACCATCCCGTCGGATGTGCAGGACAGTCGCACCGAGGTGAAACTGGCTCCGAAACGTACCGATCAGCCGTTCTTCGAGATCGTGGCCGTGCTTGATCCGGCATCACGCGGTGCCCAGAAGCTGTCCTCGCTATTGCTGCTGTTGCGCGATGTCGTCAACTGTCAGATGAAAATTTTCTTCTGTGCCATCGATAAACACAGCGACATGCCGGTTAAAACGTTCTATCGGTTCGTTGTGGAGCCGGAATTACACTTCACCAACGATGGGCGCCTGTCGGCTGGACCGTCCGCCAAGTTCGTAGGACTGCCAGCGAATCCTCTGCTCACGCAAAGCCTTAATGTGCCTGAAAATTGGTTGGTAGAAGTGGTGCGCTCCGTATACGATCTGGACAACATTAAGCTGTCGGAAATCAACGGTCCCGTGCATTCCGAGTACGAGCTGGAGTATCTGCTGTTGGAGGGGCACTGTTTCGACAGTTCCACCGGCTCACCGCCACGCGGGTTACAGATCACGCTCGGCACGGAGGATCGTCCGATCATCGTCGATACGATCGTTATGGCGAATTTGGGCTACTTCCAGCTGAAAGCCAACCCAGGCGCATGGATTCTAAAGCTCCGCCATGGAAAGAGTGCCGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGCGTGACGAAAAAA]
[+] EMBL BM615188 [CCGGTCGCGCTACACCATCCCGTCGGATGTGCAGGACAGTCGCACCGAGGTGAAACTGGCTCCGAAACGTACCGATCAGCCGTTCTTCGAGATCGTGGCCGTGCTTGATCCGGCATCACGCGGTGCCCAGAAGCTGTCCTCGCTATTGCTGCTGTTGCGCGATGTCGTCAACTGTCAGATGAAAATTTTCTTCTGTGCCATCGATAAACACAGCGACATGCCGGTTAAAACGTTCTATCGGTTCGTTGTGGAGCCGGAATTACACTTCACCAACGATGGGCGCCTGTCGGCTGGACCGTCCGCCAAGTTCGTAGGACTGCCAGCGAATCCTCTGCTCACGCAAAGCCTTAATGTGCCTGAAAATTGGTTGGTAGAAGTGGTGCGCTCCGTATACGATCTGGACAACATTAAGCTGTCGGAAATCAACGGTCCCGTGCATTCCGAGTACGAGCTGGAGTATCTGCTGTTGGAGGGGCACTGTTTCGACAGTTCCACCGGCTCACCGCCACGCGGGTTACAGATCACGCTCGGCACGGAGGATCGTCCGATCATCGTCGATACGATCGTTATGGCGAATTTGGGCTACTTCCAGCTGAAAGCCAACCCAGGCGCATGGATTCTAAAGCTCCGCCATGGAAAGAGTGCCGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGC ]
[+] EMBL AGA285339 [ GTTTCGACAGTTCCACCGGCTCACCGCCACGCGGGTTACAGATCACGCTCGGCACGGAGGATCGCCCGATCATCGTCGATACGATCGTTATGGCGAATTTGGGCTACTTCCAGCTGAAAGCCAACCCAGGCGCATGGATTCTAAAGCTCCGCCATGGAAAGAGTGCCGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGCGTGACGAAAAAA]
consensusID : consensus_3629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[AAGAATCGCCNCGAGGCCTGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGGGTGACGAAAAAACCGGGCATGGCCGGTGTCGATCTGCTGGGCGACGAGAAGGATGCAGCCGGCGGGGGTGGCATCTGGGACTCGATCAGTTCGATCGTCGGCACCGGTGGTGGCGATAGTGCTGCCAGCGGAGGTACCGGCGAAACCGAAGTGCTGAACATTTTCTCCGTCGCTTCGGGCCATCTGTACGAGCGGCTGCTGCGCATTCATGATGCTGTCGCTGCTGAAGCACACCAGCACACCGGTCAAGTTTGGTTC]
[+] EMBL AL933735 [AAGAATCGCCNCGAGGCCTGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGGGTGACGAAAAAACCGGGCATGGCCGGTGTCGATCTGCTGGGCGACGAGAAGGATGCAGCCGGCGGGGGTGGCATCTGGGACTCGATCAGTTCGATCGTCGGCACCGGTGGTGGCGATAGTGCTGCCAGCGGAGGTACCGGCGAAACCGAAGTGCTGAACATTTTCTCCGTCGCTTCGGGCCATCTGTACGAGCGGCTGCTGCGCATTCATGATGCTGTCGCTGCTGAAGCACACCAGCACACCGGTCAAGTTTGGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3629#0 CCGGTCGCGCTACACCATCCCGTCGGATGTGCAGGACAGTCGCACCGAGGTGAAACTGGC 60
consensus_3629#1 ------------------------------------------------------------
consensus_3629#0 TCCGAAACGTACCGATCAGCCGTTCTTCGAGATCGTGGCCGTGCTTGATCCGGCATCACG 120
consensus_3629#1 ------------------------------------------------------------
consensus_3629#0 CGGTGCCCAGAAGCTGTCCTCGCTATTGCTGCTGTTGCGCGATGTCGTCAACTGTCAGAT 180
consensus_3629#1 ------------------------------------------------------------
consensus_3629#0 GAAAATTTTCTTCTGTGCCATCGATAAACACAGCGACATGCCGGTTAAAACGTTCTATCG 240
consensus_3629#1 ------------------------------------------------------------
consensus_3629#0 GTTCGTTGTGGAGCCGGAATTACACTTCACCAACGATGGGCGCCTGTCGGCTGGACCGTC 300
consensus_3629#1 ------------------------------------------------------------
consensus_3629#0 CGCCAAGTTCGTAGGACTGCCAGCGAATCCTCTGCTCACGCAAAGCCTTAATGTGCCTGA 360
consensus_3629#1 -------------------------------------AAGAATCGCCNCGAG--GCCTGA 21
* * * *** * ******
consensus_3629#0 AAATTG-GTTGGTAGAAGTG-GTGCGCTCCGTATACGATCTGGACAACATTAAGCTGTCG 418
consensus_3629#1 CATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGC--CGAGAGTACG 79
* * * ** ** * * * *** * *** * ** * ** **
consensus_3629#0 GAAATCAACGGTCCCGTGCATTCCGAGTACGAGCTGGAGTATCTGCTGTTGGAGGGGCAC 478
consensus_3629#1 CGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGGGTGACGAAAAAACCG 139
*** * * * ** * * *** *** ** * * ** * * *
consensus_3629#0 TGTTTCGACAGT-TCCACCGGCTCACCGCCACGCGGGTTACAGATCACGCT--CGGCACG 535
consensus_3629#1 GGCATGGCCGGTGTCGATCTGCTGGGCGACGAGAAGGATGCAGCCGGCGGGGGTGGCATC 199
* * * * ** ** * * *** ** * * ** * *** ** ****
consensus_3629#0 GAGGA-TCGTCCGATC--ATCGTCGATACGATCGTTATGGCGAATTTGGGCTACTTCCAG 592
consensus_3629#1 TGGGACTCGATCAGTTCGATCGTCGGCACCG--GTGGTGGCGA---TAG--TGCTGCCAG 252
*** *** * * ******* ** ** ****** * * * ** ****
consensus_3629#0 CTGAAAGCCAACCCAGGCGCATGGATTCTAAAGCTCCGCCATGGAAAGAGTGCCGACATC 652
consensus_3629#1 CGGAGGTACCGGCGAAACCGAAGTGCTGAACATTTTCTCCGTCGCTTCGG-GCCATC-TG 310
* ** * * * * * * * * * * * ** * * * *** * *
consensus_3629#0 TACGA-CATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGT 711
consensus_3629#1 TACGAGCGGCTGCTGCGCATTCATGATGCTGTCGCTGCTGAAGCACACCAGCACACCGGT 370
***** * * **** * ** *** * * * ** ** * **
consensus_3629#0 CATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGCGTGACGAAAAAA 763
consensus_3629#1 CAAGTTTGGTTC---------------------------------------- 382
** ** * **
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||