cluster # 3636

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Anopheles gambiae
cluster # 3636 cluster # 3636 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3636#0 length = 379 sequences # 1

consensus_3636#1 length = 378 sequences # 1
consensus_3636#2 length = 373 sequences # 1

consensusID : consensus_3636#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [CCGATTTGCGGGCGCTAAACAGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATAGCATGCGAT]

[+] EMBL BM581877             [CCGATTTGCGGGCGCTAAACAGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATAGCATGCGAT]




>consensus_3636#0
CCGATTTGCGGGCGCTAAACAGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTC
GAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCAC
TGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAA
CAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCT
GCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAA
CTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATAC
ACAATAAATAGCATGCGAT

consensusID : consensus_3636#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATAGCATGCGATAAGTAATGG]

[+] EMBL BM631239             [CCGCCCACGCGTCCGCCCACGCGTCCGAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATAGCATGCGATAAGTAATGG]




>consensus_3636#1
CCGCCCACGCGTCCGCCCACGCGTCCGAACAAACTCCGCACGAACGCCTCGAAGCCAAAG
ATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGCACTGCAATGGAA
AAGGAAAACAAAAGCTCAGCCACGGATAATGGGCGAAAGCCGGCTGGAAACAACTTGCAA
TCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTG
AAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTG
CAGAACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGATACACAATAAATA
GCATGCGATAAGTAATGG

consensusID : consensus_3636#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [GAAAAAGCGGAATTCCTCGAGCACTGTTGGCCCACTGGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGGACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATTATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGGACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGA]

[-] EMBL CNS08V9S             [GAAAAAGCGGAATTCCTCGAGCACTGTTGGCCCACTGGAATTTCGATTTCGTAAACAAACTCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCCAGAGGACACAGCGGACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATTATGGGCGAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGGTGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGGTGCAATATTTGGCCAACTTTTTGCTGCAGGACAAGAACCGCGTCGAGGAAAGCAACGGAGCCAGTACGGAAGA]




>consensus_3636#2
GAAAAAGCGGAATTCCTCGAGCACTGTTGGCCCACTGGAATTTCGATTTCGTAAACAAAC
TCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCC
AGAGGACACAGCGGACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATTATGGGC
GAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGG
TGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGG
TGCAATATTTGGCCAACTTTTTGCTGCAGGACAAGAACCGCGTCGAGGAAAGCAACGGAG
CCAGTACGGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3636#0      ---------------CCGATTTGCGGGCGCTAAACAGAA-TTTCGATTTCGTAAACAAAC 44
consensus_3636#1      -----------------------CCGCCCACGCGTCCGC-CCACGCGTCCG--AACAAAC 34
consensus_3636#2      GAAAAAGCGGAATTCCTCGAGCACTGTTGGCCCACTGGAATTTCGATTTCGTAAACAAAC 60
                                             * *                 **  * **  *******

consensus_3636#0      TCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCC 104
consensus_3636#1      TCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCC 94
consensus_3636#2      TCCGCACGAACGCCTCGAAGCCAAAGATAGAAAAGCGTCCAGAAACGGCCCCCAGCTGCC 120
                      ************************************************************

consensus_3636#0      AGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGC 164
consensus_3636#1      AGAGGACACAGCGCACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATAATGGGC 154
consensus_3636#2      AGAGGACACAGCGGACTGCAATGGAAAAGGAAAACAAAAGCTCAGCCACGGATTATGGGC 180
                      ************* *************************************** ******

consensus_3636#0      GAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGG 224
consensus_3636#1      GAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGG 214
consensus_3636#2      GAAAGCCGGCTGGAAACAACTTGCAATCGCTACCCACCCGCCAGTATTTGGACCAAACGG 240
                      ************************************************************

consensus_3636#0      TGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGG 284
consensus_3636#1      TGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGG 274
consensus_3636#2      TGAATCCCATCCTGCTGCAGGGCCTGAAAGTGTTGGCCAAAGAAAGACCCCAGGATCCGG 300
                      ************************************************************

consensus_3636#0      TGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAG 344
consensus_3636#1      TGCAATATTTGGCCAACTTTTTGCTGCAGAACAAGAACCGCGTCGAGGAAAGCAACGGAG 334
consensus_3636#2      TGCAATATTTGGCCAACTTTTTGCTGCAGGACAAGAACCGCGTCGAGGAAAGCAACGGAG 360
                      ***************************** ******************************

consensus_3636#0      CCAGTACGGAAGATACACAATAAATAGCATGCGAT--------- 379
consensus_3636#1      CCAGTACGGAAGATACACAATAAATAGCATGCGATAAGTAATGG 378
consensus_3636#2      CCAGTACGGAAGA------------------------------- 373
                      *************