cluster # 3645

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Anopheles gambiae
cluster # 3645 cluster # 3645 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3645#0 length = 688 sequences # 2

consensus_3645#1 length = 475 sequences # 1

consensusID : consensus_3645#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 688
fasta sequence

                              [TCCGCATACAGTATACTTCATAAGAGATTAGTAACACCATCGGTCACAAGAAAAGGAGAAAGAGCAGATATTTTTAGGCAGACTTTCTCCAGCTGCGCTAGTACTAGTGAACGGAAATTCTAGTACGATCGCGCGCACAACACTTCACACTGCTGCTGACAGTGCTTCAGGGCGATGGCGACATAGACGAAAACAGAGGGACAAACCAGCCGTGTGTTGTGTGCTTGTATTAGTGCGCTACGCAAATAAGGGCCTACGGAAGGGAGCGAAATGCGATAAAAACATATATTTTGGTGTATAGTCCATTGGAATTAAGCTTAAAAATACGCGACTACTTACAATTAAACGAGAGCGCTGCACCTCATATTATTTCTTGCAGGGCTATATAATCGAGTGTGAATGACTTTTCTCTGCCGCATGCACGAATTTTGCTTTCAATCTTCAAATAAACAAATTAAGAACGGTAAATCCTACATTACCGGAAGGTAATGTCCCGTACAAGCAACACCTTTGGTATGATATAAAATTCATGAATGCTAGAGAAAAAAAAAGTTTACAAAACACATAAAACGGCAACCTTAAAATCGGTTCTCCCCCCACCGTACACCACACGAATGGAAAGAGCGTGGATTAATGAACGAACCACGCAAAACAGTTTAGTACCAACACACCAACAAATCCATTTCCC]

[+] EMBL BM621121             [ CCGCATACAGTATACTTCATAAGAGATTAGTAACACCATCGGTCACAAGAAAAGGAGAAAGAGCAGATATTTTTAGGCAGACTTTCTCCAGCTGCGCTAGTACTAGTGAACGGAAATTCTAGTACGATCGCGCGCACAACACTTCACACTGCTGCTGACAGTGCTTCAGGGCGATGGCGACATAGACGAAAACAGAGGGACAAACCAGCCGTGTGTTGTGTGCTTGTATTAGTGCGCTACGCAAATAAGGGCCTACGGAAGGGAGCGAAATGCGATAAAAACATATATTTTGGTGTATAGTCCATTGGAATTAAGCTTAAAAATACGCGACTACTTACAATTAAACGAGAGCGCTGCACCTCATATTATTTCTTGCAGGGCTATATAATCGAGTGTGAATGACTTTTCTCTGCCGCATGCACGAATTTTGCTTTCAATCTTCAAATAAACAAATTAAGAACGGTAAATCCTACATTACCGGAAGGTAATGTCCCGTACAAGCAACACCTTTGGTATGATATAAAATTCATGAATGCTAGAGAAAAAAAAAGTTTACAAAACACATAAAACGGCAACCTTAAAATCGGTTCTCCCCCCACCGTACACCACACGAATGGAAAGAGCGTGGATTAATGAACGAACCACGCAAAACAGTTTAGTACCAACACACCAACAAATCCATTTCCC]
[+] EMBL AGA285722            [tcatCATACAGTATATTTCATAAGAGATTAGTAACACCATCGGTCACAAGAAAAGGAGAAAGAGCAGATATTTTTAGGCAGACTTTCTCCAGCTGCGCTAGTACTAGTGAACGGAAATTCTAGTACGATCGCGCGCACAACACTTCACACTGCTGCTGACAGTGCTTCAGGGCGATGGCGACATAGACGAAAACAGAGGGACAAACCAGCCGTGTGTTGTGTGCTTGTATTAGTGCGCTACGCAAAAGAGGGCCTACGGAAGGGAGCGAAATGCGATAAAAACATATATTTTGGTGTATAGTCCATTGGAATTAAGCTTAAAAATACGCGACGACTTACAATTAAACGAGAGCGCTGCACCTCATATTAATTCTTGCAGGGCTATATAATCGAGTGTGAATGACTTTTCCCTGCCGCATG                                                                                                                                                                                                                                                                            ]




>consensus_3645#0
TCCGCATACAGTATACTTCATAAGAGATTAGTAACACCATCGGTCACAAGAAAAGGAGAA
AGAGCAGATATTTTTAGGCAGACTTTCTCCAGCTGCGCTAGTACTAGTGAACGGAAATTC
TAGTACGATCGCGCGCACAACACTTCACACTGCTGCTGACAGTGCTTCAGGGCGATGGCG
ACATAGACGAAAACAGAGGGACAAACCAGCCGTGTGTTGTGTGCTTGTATTAGTGCGCTA
CGCAAATAAGGGCCTACGGAAGGGAGCGAAATGCGATAAAAACATATATTTTGGTGTATA
GTCCATTGGAATTAAGCTTAAAAATACGCGACTACTTACAATTAAACGAGAGCGCTGCAC
CTCATATTATTTCTTGCAGGGCTATATAATCGAGTGTGAATGACTTTTCTCTGCCGCATG
CACGAATTTTGCTTTCAATCTTCAAATAAACAAATTAAGAACGGTAAATCCTACATTACC
GGAAGGTAATGTCCCGTACAAGCAACACCTTTGGTATGATATAAAATTCATGAATGCTAG
AGAAAAAAAAAGTTTACAAAACACATAAAACGGCAACCTTAAAATCGGTTCTCCCCCCAC
CGTACACCACACGAATGGAAAGAGCGTGGATTAATGAACGAACCACGCAAAACAGTTTAG
TACCAACACACCAACAAATCCATTTCCC

consensusID : consensus_3645#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CAGAATCGCCACGAGGAAAACATATATTTTGGTGTATAGCTCCATTGGAATTAAGCTTAAAAATACGCGACGACTTACAATTAAACGAGAGCGCTGCACCTCATATTATTTCTTGCAGGGCTATATAATCGAGTGTGAATGACTTTTCTCTGCCGCATGCACGAATTTTGCTTTCTTTCAATCTTCAAATAAAGAAATTAAGAATGGTAAATCCTTACCGGAAGGACATACTAATGTCCCGTACAAGCAACACCTTTGGTATGATATAAAATTCATGAATGCTAGAGAAAAAAAATGTTCAGAAAACACATAAAACGGCAACCTTAAAATCGCCCCCCCCCCCCCCCCACCCACCACACAATAAAACGTGACATGTGAANGNTGTAAANGAACGGATTAATGGACGAATCTACGCAAAACAGGGTTAATACCGAACACACCAAACCAATCCCAGTGTTCCCCAGGCCCACAAGAG]

[+] EMBL BX467688             [CAGAATCGCCACGAGGAAAACATATATTTTGGTGTATAGCTCCATTGGAATTAAGCTTAAAAATACGCGACGACTTACAATTAAACGAGAGCGCTGCACCTCATATTATTTCTTGCAGGGCTATATAATCGAGTGTGAATGACTTTTCTCTGCCGCATGCACGAATTTTGCTTTCTTTCAATCTTCAAATAAAGAAATTAAGAATGGTAAATCCTTACCGGAAGGACATACTAATGTCCCGTACAAGCAACACCTTTGGTATGATATAAAATTCATGAATGCTAGAGAAAAAAAATGTTCAGAAAACACATAAAACGGCAACCTTAAAATCGCCCCCCCCCCCCCCCCACCCACCACACAATAAAACGTGACATGTGAANGNTGTAAANGAACGGATTAATGGACGAATCTACGCAAAACAGGGTTAATACCGAACACACCAAACCAATCCCAGTGTTCCCCAGGCCCACAAGAG]




>consensus_3645#1
CAGAATCGCCACGAGGAAAACATATATTTTGGTGTATAGCTCCATTGGAATTAAGCTTAA
AAATACGCGACGACTTACAATTAAACGAGAGCGCTGCACCTCATATTATTTCTTGCAGGG
CTATATAATCGAGTGTGAATGACTTTTCTCTGCCGCATGCACGAATTTTGCTTTCTTTCA
ATCTTCAAATAAAGAAATTAAGAATGGTAAATCCTTACCGGAAGGACATACTAATGTCCC
GTACAAGCAACACCTTTGGTATGATATAAAATTCATGAATGCTAGAGAAAAAAAATGTTC
AGAAAACACATAAAACGGCAACCTTAAAATCGCCCCCCCCCCCCCCCCACCCACCACACA
ATAAAACGTGACATGTGAANGNTGTAAANGAACGGATTAATGGACGAATCTACGCAAAAC
AGGGTTAATACCGAACACACCAAACCAATCCCAGTGTTCCCCAGGCCCACAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3645#0      TCCGCATACAGTATACTTCATAAGAGATTAGTAACACCATCGGTCACAAGAAAAGGAGAA 60
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      AGAGCAGATATTTTTAGGCAGACTTTCTCCAGCTGCGCTAGTACTAGTGAACGGAAATTC 120
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      TAGTACGATCGCGCGCACAACACTTCACACTGCTGCTGACAGTGCTTCAGGGCGATGGCG 180
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      ACATAGACGAAAACAGAGGGACAAACCAGCCGTGTGTTGTGTGCTTGTATTAGTGCGCTA 240
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      CGCAAATAAGGGCCTACGGAAGGGAGCGAAATGCGATAAAAACATATATTTTGGTGTATA 300
consensus_3645#1      --------------------CAGAATCG--CCACGAGGAAAACATATATTTTGGTGTATA 38
                                            * * **     ***  **********************

consensus_3645#0      G-TCCATTGGAATTAAGCTTAAAAATACGCGACTACTTACAATTAAACGAGAGCGCTGCA 359
consensus_3645#1      GCTCCATTGGAATTAAGCTTAAAAATACGCGACGACTTACAATTAAACGAGAGCGCTGCA 98
                      * ******************************* **************************

consensus_3645#0      CCTCATATTATTTCTTGCAGGGCTATATAATCGAGTGTGAATGACTTTTCTCTGCCGCAT 419
consensus_3645#1      CCTCATATTATTTCTTGCAGGGCTATATAATCGAGTGTGAATGACTTTTCTCTGCCGCAT 158
                      ************************************************************

consensus_3645#0      GCACGAATTTTGCTTTC----AATCTTCAAATAAACAAATTAAGAACGGTAAATCCTACA 475
consensus_3645#1      GCACGAATTTTGCTTTCTTTCAATCTTCAAATAAAGAAATTAAGAATGGTAAATCCT--- 215
                      *****************    ************** ********** **********   

consensus_3645#0      TTACCGGAAGG------TAATGTCCCGTACAAGCAACACCTTTGGTATGATATAAAATTC 529
consensus_3645#1      -TACCGGAAGGACATACTAATGTCCCGTACAAGCAACACCTTTGGTATGATATAAAATTC 274
                       **********      *******************************************

consensus_3645#0      ATGAATGCTAGAGAAAAAAAAAGTTTACAAAACACATAAAACGGCAACCTTAAAATCGGT 589
consensus_3645#1      ATGAATGCTAGAGAAAAAAAATGTTCAGAAAACACATAAAACGGCAACCTTAAAATCGCC 334
                      ********************* *** * ******************************  

consensus_3645#0      TCTCCCCCCACCGTAC--ACCACACGA-----------ATGGAAAGAGCGT--------G 628
consensus_3645#1      CCCCCCCCCCCCCCACCCACCACACAATAAAACGTGACATGTGAANGNTGTAAANGAACG 394
                       * ****** **  **  ******* *           ***  **    **        *

consensus_3645#0      GATTAATGAACGAACC-ACGCAAAACAGT-TTAGTACC-AACACACCAA--CAAATCCAT 683
consensus_3645#1      GATTAATGGACGAATCTACGCAAAACAGGGTTAATACCGAACACACCAAACCAATCCCAG 454
                      ******** ***** * ***********  *** **** **********  ***  *** 

consensus_3645#0      TTCCC---------------- 688
consensus_3645#1      TGTTCCCCAGGCCCACAAGAG 475
                      *   *