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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 952 fasta sequence
[TATGAAAATGAACCTGCGGGTGTTGTACCGGCATCAGCAGTAGCATCAGCAGCAGCAACGGCACAAGCGGCACCAGTGGCTCCCACTGGACCGGTCAGTCCCATCGCCTATCAGAGGTACTACGCAAGCACTCCCGTGCAGCAACCACAGCAACAATACATCACGCACCAGATTCGACCAGCTCGACTGTACTATGCCGCACAAAATCCGACCCAAATTCCGGCTCCTTTCTATCCCTCCCAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCAGTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTCCCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGGTGGACCGATCAGAACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACAGCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCGCTTGGTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGATCAGGCGCGTGTTTCGCCCCAAGGTTCGGGCACGCTACAACAAGTGATCTACCAGCAGCAGCAGCAGCAGCAATCGCAACAGCAACCACAAAGCTTGGGACTACNGGTACGTGCAGATTCCAGTTGACAATCGGGTGCACAAACGAAACACGGATCACAACACGGAGGTAATGGCCGGTTCTAAGGCACCCAAGAATGTGGCGCAAAAGCCGCGGAATCAAACCAAACGCCACCAGCAGGAGCAGAAAACGCTGTAAATCGTGCGTCTGGTGGTTGTAAATATCTTTCTATCTAATAGCTAATTATTTGTAATAAAAATATTGGTAACAGTCTAAAAAAATTACAACAAAAAGCAGCATGTC]
[+] EMBL BX625377 [TATGAAAATGAACCTGCGGGTGTTGTACCGGCATCAGCAGTAGCATCAGCAGCAGCAACGGCACAAGCGGCACCAGTGGCTCCCACTGGACCGGTCAGTCCCATCGCCTATCAGAGGTACTACGCAAGCACTCCCGTGCAGCAACCACAGCAACAATACATCACGCACCAGATTCGACCAGCTCGACTGTACTATGCCGCACAAAATCCGACCCAAATTCCGGCTCCTTTCTATCCCTCCCAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCAGTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTCCCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGGTGGACCGATCAGAACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACAGCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCGCTTGGTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGATCAGGCGCGTGTTTCGCCCCAAGGTTCGGGCACGCTACAACAAGTGATCTACCAGCAGCAGCAGCAGCAGCAATCGCAACAGCAACCACAAAGCTTGGGACTACNGGTACGT ]
[-] EMBL BX466806 [ CGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGATCAGGCGCGTGTTTCGCCCCAAGGTTCGGGCACGCTACAACAAGTGATCTACCAGCAGCAGCAGCAGCAGCAATCGCAACAGCAACCACAAAGCTT GGACTACGGGTACGTGCAGATTCCAGTTGACAATCGGGTGCACAAACGAAACACGGATCACAACACGGAGGTAATGGCCGGTTCTAAGGCACCCAAGAATGTGGCGCAAAAGCCGCGGAATCAAACCAAACGCCACCAGCAGGAGCAGAAAACGCTGTAAATCGTGCGTCTGGTGGTTGTAAATATCTTTCTATCTAATAGCTAATTATTTGTAATAAAAATATTGGTAACAGTCTAAAAAAATTACAACAAAAAGCAGCATGTC]
consensusID : consensus_3659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[CAGAATCCCNCGAGGTTTAAATTCGGCTCTTTCTATCCTCCCAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCAGTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTCCCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGTTGGACCGATCAGAACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACAGCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCGCTTGGCTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGACTCAGGCGCGTGATTTCGCCCCAAGGNTTCGNGGCACGCTACAACAAGCTGATCTACCAGCCAGCCACGCCAGCCAGCACGCAACTCGCAACAGCAACCACAACAGCTCTGCGCACTACGCGGTACGCTGCANAATATCCACGCTCTGACAACTCGNGNGCTGCACACACACCGCAACACACGGACTCACAACACGGCAGGTAACTGCGCCGGNCTCTAAC]
[+] EMBL AL692036 [CAGAATCCCNCGAGGTTTAAATTCGGCTCTTTCTATCCTCCCAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCAGTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTCCCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGTTGGACCGATCAGAACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACAGCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCGCTTGGCTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGACTCAGGCGCGTGATTTCGCCCCAAGGNTTCGNGGCACGCTACAACAAGCTGATCTACCAGCCAGCCACGCCAGCCAGCACGCAACTCGCAACAGCAACCACAACAGCTCTGCGCACTACGCGGTACGCTGCANAATATCCACGCTCTGACAACTCGNGNGCTGCACACACACCGCAACACACGGACTCACAACACGGCAGGTAACTGCGCCGGNCTCTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3659#0 TATGAAAATGAACCTGCGGGTGTTGTACCGGCATCAGCAGTAGCATCAGCAGCAGCAACG 60
consensus_3659#1 ------------------------------------------------------------
consensus_3659#0 GCACAAGCGGCACCAGTGGCTCCCACTGGACCGGTCAGTCCCATCGCCTATCAGAGGTAC 120
consensus_3659#1 ------------------------------------------------------------
consensus_3659#0 TACGCAAGCACTCCCGTGCAGCAACCACAGCAACAATACATCACGCACCAGATTCGACCA 180
consensus_3659#1 ------------------------------------------------------------
consensus_3659#0 GCTCGACTGTACTATGCCGCACAAAATCCGACCCAAATTCCGGCTCCTTTCTATCCCTCC 240
consensus_3659#1 ----------------CAGAATCCCNCGAGGTTTAAATTC-GGCTC-TTTCTATCC-TCC 41
* * * * ****** ***** ********* ***
consensus_3659#0 CAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCA 300
consensus_3659#1 CAACTCCGACCGAGTGATGTGAAGATTCACAGCTACAACACGGCTCCCCATGCCGGGGCA 101
************************************************************
consensus_3659#0 GTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTC 360
consensus_3659#1 GTGATCGCTTCGACGACCACCCAGGCGACCCCCGTTGCTGGAGCATATCTGGCCGCCTTC 161
************************************************************
consensus_3659#0 CCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGGTGGACCGATCAGA 420
consensus_3659#1 CCGGCAGCGGGCAACCTAGCCTACATTGCGACAGCACCCGTAAACGTTGGACCGATCAGA 221
********************************************** *************
consensus_3659#0 ACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACA 480
consensus_3659#1 ACGCTACAGCTACAATCGAACGGTGGTGGTGCTGCCGGCACGATAGCGGTCCCCGTAACA 281
************************************************************
consensus_3659#0 GCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCG 540
consensus_3659#1 GCAATTCCGCTGGCAGCGTACCGTGACATCAATGTGCCGCCGTCACCACCCGTCCAGCCG 341
************************************************************
consensus_3659#0 CTTGG-TGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGA-TCAGGCGC 598
consensus_3659#1 CTTGGCTGTAGCGTTCGCTTCGGCCGGTAGACGTACGACGGTTTATGCTGACTCAGGCGC 401
***** ********************************************* ********
consensus_3659#0 GTG-TTTCGCCCCAAGGTTC--GGGCACGCTACAACAAG-TGATCTACCAGCAGCAGCAG 654
consensus_3659#1 GTGATTTCGCCCCAAGGNTTCGNGGCACGCTACAACAAGCTGATCTACCAGC--CAGCCA 459
*** ************* * **************** ************ ****
consensus_3659#0 CAGCAGCAATCGCAACAGCAACCACAAAGCTTGGGACTACNGGTACGTGCAGATTCCAGT 714
consensus_3659#1 CGCCAGCCAGCACG-CAAC--TCGCAACAGCAACCACAACAGCTCTGCGCACTACGCGGT 516
* **** * * * ** * * *** ** ** * * * *** * **
consensus_3659#0 TGACAATCGGGTGCACAAACGAAACACGGATCACAACACGGAGGTAATGGCCGGTTCTAA 774
consensus_3659#1 ACGCTGCANAATATCCACGCTCTG-ACAACTCGNGNGCTGCACACACACCGCAACACACG 575
* * ** * ** ** * * * * *
consensus_3659#0 GGCACCCAAGAATGTGGCGCAAAAGCCGCGGAATCAAACCAAACGCCACCAGCAGGAGCA 834
consensus_3659#1 GACTCACAACACGGCAG-GTAACTGCGCCGGNCTCTAAC--------------------- 613
* * * *** * * * * ** ** *** ** ***
consensus_3659#0 GAAAACGCTGTAAATCGTGCGTCTGGTGGTTGTAAATATCTTTCTATCTAATAGCTAATT 894
consensus_3659#1 ------------------------------------------------------------
consensus_3659#0 ATTTGTAATAAAAATATTGGTAACAGTCTAAAAAAATTACAACAAAAAGCAGCATGTC 952
consensus_3659#1 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||