cluster # 3660

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Anopheles gambiae
cluster # 3660 cluster # 3660 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3660#0 length = 583 sequences # 2

consensus_3660#1 length = 126 sequences # 1

consensusID : consensus_3660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 583
fasta sequence

                              [CCGCGACTCCCAGAAAAGAGTAGGATAAAGACGCCCTCCCAGCAATTACGTGGTGTAAATAAAGCCGGCTAGCCATAAAATTAATCTCCTCGTCTGCGTGTGGACATTTTGAGGACCGGAAATGCAACGTTCGCATCTATTTCTCCTCTGCTTGGCCGGTTTGGCACTAGCCCAAAGCGTCCATGCCGAAGCCAAGCTAAAGATTGGCGTAAAGAAACGCGTCGAAAACTGCACCGTGCGCACGAAGAAGGGCGACCTGGTGCACATGCATTACACGGGTACGCTTGAGGATGGCACCGAGTTCGACAGCAGCATTCCGCGGGGCAACCCGCTCACCTTCACGCTTGGCATGGGCCAGGTGATCAAGGGCTGGGACCAGGGGCTGCTCGGCATGTGCGAAGGCGAGAAGCGCAAGCTCGTCATCCCACCGGAGCTGGGCTACGGGGAGCGTGGGGCCGGTGAAAAGATTCCCCCCAACTCGGTGCTCATCTTCGAGGTGGAGCTGGTGAAAATCGAACGCAAAACTGAGCTGTAACTTTAGCGACGACGGAGCAATAAAAGCGTCTTTCAGCGTTTGTGTCGT]

[+] EMBL BM603184             [CCGCGACTCCCAGAAAAGAGTAGGATAAAGACGCCCTCCCAGCAATTACGTGGTGTAAATAAAGCCGGCTAGCCATAAAATTAATCTCCTCGTCTGCGTGTGGACATTTTGAGGACCGGAAATGCAACGTTCGCATCTATTTCTCCTCTGCTTGGCCGGTTTGGCACTAGCCCAAAGCGTCCATGCCGAAGCCAAGCTAAAGATTGGCGTAAAGAAACGCGTCGAAAACTGCACCGTGCGCACGAAGAAGGGCGACCTGGTGCACATGCATTACACGGGTACGCTTGAGGATGGCACCGAGTTCGACAGCAGCATTCCGCGGGGCAACCCGCTCACCTTCACGCTTGGCATGGGCCAGGTGATCAAGGGCTGGGACCAGGGGCTGCTCGGCATGTGCGAAGGCGAGAAGCGCAAGCTCGTCATCCCACCGGAGCTGGGCTACGGGGAGCGTGGGGCCGGTGAAAAGATTCCCCCCAACTCGGTGCTCATCTTCGAGGTGGAGCTGGTGAAAATCGAACGCAAAACTGAGCTGTAACTTTAGCGACGACGGAGCAATAAAAGCGTCTTTCAGCGTTTGTGTCGT]
[+] EMBL BM585647             [                                             ccgCGTGGTGTAAATAAAGCCGGCTAGCCATAAAATTAATCTCCTGGTCTGCGTGTGGACATTTTGAGGACCGGAAATGCAACGTTCGCATCTATTTCTCCTCTGCCTGGCCGGTTTGGCACTAGCCCAAAGCGTCCATGCCGAAGCCAAGCTAAAGATTGGCGTAAAGAAACGCGTCGAAAACTGCACCGTGCGCACGAAGAAGGGCGACCTGGTGCACATGCATTACACGGGTACGCTTGAGGATGGCACCGAGTTCGACAGCAGCATTCCGCGTGGCAACCCGCTCACCTTCACGCTTGGCATGGGCCAGGTGATCAAGGGCTGGGACCAGGGGCTGCTCGGCATGTGCGAAGGCGAGAAGCGCAAGCTCGTCATCCCACCGGAGCTGGGCTACGGGGAGCGTGGGGCCGGCGAAAAGATTCCCCCCAACTCGGTGCTCATCTTCGAGGTGGAGCTGGTGAAAATCGAACGCAAAACTGAGCTGTAACTTTAGCGACGACGGAGCAATAAAAGCGTCTTTCAGCGTTTGTGTCGT]




>consensus_3660#0
CCGCGACTCCCAGAAAAGAGTAGGATAAAGACGCCCTCCCAGCAATTACGTGGTGTAAAT
AAAGCCGGCTAGCCATAAAATTAATCTCCTCGTCTGCGTGTGGACATTTTGAGGACCGGA
AATGCAACGTTCGCATCTATTTCTCCTCTGCTTGGCCGGTTTGGCACTAGCCCAAAGCGT
CCATGCCGAAGCCAAGCTAAAGATTGGCGTAAAGAAACGCGTCGAAAACTGCACCGTGCG
CACGAAGAAGGGCGACCTGGTGCACATGCATTACACGGGTACGCTTGAGGATGGCACCGA
GTTCGACAGCAGCATTCCGCGGGGCAACCCGCTCACCTTCACGCTTGGCATGGGCCAGGT
GATCAAGGGCTGGGACCAGGGGCTGCTCGGCATGTGCGAAGGCGAGAAGCGCAAGCTCGT
CATCCCACCGGAGCTGGGCTACGGGGAGCGTGGGGCCGGTGAAAAGATTCCCCCCAACTC
GGTGCTCATCTTCGAGGTGGAGCTGGTGAAAATCGAACGCAAAACTGAGCTGTAACTTTA
GCGACGACGGAGCAATAAAAGCGTCTTTCAGCGTTTGTGTCGT

consensusID : consensus_3660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 126
fasta sequence

                              [CGAAGGCGAGAAGCGCAAGCTCGTCATCCCACCGGAGCCGGGCTACGGGGAGCGGGGGGCCGGCGAAAAGAATCCCCCCAACTCGGGGCCCACCCTCGAGGGGGAGCCGGCGAAAACCGAACGCAA]

[+] EMBL BX616515             [CGAAGGCGAGAAGCGCAAGCTCGTCATCCCACCGGAGCCGGGCTACGGGGAGCGGGGGGCCGGCGAAAAGAATCCCCCCAACTCGGGGCCCACCCTCGAGGGGGAGCCGGCGAAAACCGAACGCAA]




>consensus_3660#1
CGAAGGCGAGAAGCGCAAGCTCGTCATCCCACCGGAGCCGGGCTACGGGGAGCGGGGGGC
CGGCGAAAAGAATCCCCCCAACTCGGGGCCCACCCTCGAGGGGGAGCCGGCGAAAACCGA
ACGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3660#0      CCGCGACTCCCAGAAAAGAGTAGGATAAAGACGCCCTCCCAGCAATTACGTGGTGTAAAT 60
consensus_3660#1      ------------------------------------------------------------
                                                                                  

consensus_3660#0      AAAGCCGGCTAGCCATAAAATTAATCTCCTCGTCTGCGTGTGGACATTTTGAGGACCGGA 120
consensus_3660#1      ------------------------------------------------------------
                                                                                  

consensus_3660#0      AATGCAACGTTCGCATCTATTTCTCCTCTGCTTGGCCGGTTTGGCACTAGCCCAAAGCGT 180
consensus_3660#1      ------------------------------------------------------------
                                                                                  

consensus_3660#0      CCATGCCGAAGCCAAGCTAAAGATTGGCGTAAAGAAACGCGTCGAAAACTGCACCGTGCG 240
consensus_3660#1      ------------------------------------------------------------
                                                                                  

consensus_3660#0      CACGAAGAAGGGCGACCTGGTGCACATGCATTACACGGGTACGCTTGAGGATGGCACCGA 300
consensus_3660#1      ------------------------------------------------------------
                                                                                  

consensus_3660#0      GTTCGACAGCAGCATTCCGCGGGGCAACCCGCTCACCTTCACGCTTGGCATGGGCCAGGT 360
consensus_3660#1      ------------------------------------------------------------
                                                                                  

consensus_3660#0      GATCAAGGGCTGGGACCAGGGGCTGCTCGGCATGTGCGAAGGCGAGAAGCGCAAGCTCGT 420
consensus_3660#1      ------------------------------------CGAAGGCGAGAAGCGCAAGCTCGT 24
                                                          ************************

consensus_3660#0      CATCCCACCGGAGCTGGGCTACGGGGAGCGTGGGGCCGGTGAAAAGATTCCCCCCAACTC 480
consensus_3660#1      CATCCCACCGGAGCCGGGCTACGGGGAGCGGGGGGCCGGCGAAAAGAATCCCCCCAACTC 84
                      ************** *************** ******** ******* ************

consensus_3660#0      GGTGCTCATCTTCGAGGTGGAGCTGGTGAAAATCGAACGCAAAACTGAGCTGTAACTTTA 540
consensus_3660#1      GGGGCCCACCCTCGAGGGGGAGCCGGCGAAAACCGAACGCAA------------------ 126
                      ** ** ** * ****** ***** ** ***** *********                  

consensus_3660#0      GCGACGACGGAGCAATAAAAGCGTCTTTCAGCGTTTGTGTCGT 583
consensus_3660#1      -------------------------------------------