cluster # 3661

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Anopheles gambiae
cluster # 3661 cluster # 3661 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3661#0 length = 579 sequences # 1

consensus_3661#1 length = 522 sequences # 2

consensusID : consensus_3661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [AATCCGAGGTAAATACGACTCGATCACGGAGAATGCCCGAACGTCACTCGGTATTGCGATCCGCCAGTGCGACAAGCTGGTATCGGGCGACCTTAACGTTAGCCCCGGGGCTCACCTGCAGATGGAAATTTTCCTCGACAACCGTTCGGCACAATTTACGGGCTCGGCGTCAACTACATGCTCGTCACCGAACCAAATACCAGGAGGAAACGACATTTTCAACGGCTGCTCGGTTGATCCGTATCTGTTCGAAAACTTCAACACGGTCGACCGTGACCTTGCTTGGCGGNCAAGTTCCGCGCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGGCCACGTCAACGTGTGCGTCGATCGGTGCAAGGGTGTAATCTGCAGCAACGGTCAGACGGCCGTTCGGGACGGCGGAAAGCGCCGAGATCATGCCTCACCGGACGAACCGAACCAAGGTTGTACGGAACGTCACCCATTGACTACCTNTCACTCAACNGGTGAAACCTACGAACGCACGAATTGCCACGATCCAGACATACCCCGNGTCCGCGCAGATNTGATTCACGCACAACANCCG]

[+] EMBL AL694452             [AATCCGAGGTAAATACGACTCGATCACGGAGAATGCCCGAACGTCACTCGGTATTGCGATCCGCCAGTGCGACAAGCTGGTATCGGGCGACCTTAACGTTAGCCCCGGGGCTCACCTGCAGATGGAAATTTTCCTCGACAACCGTTCGGCACAATTTACGGGCTCGGCGTCAACTACATGCTCGTCACCGAACCAAATACCAGGAGGAAACGACATTTTCAACGGCTGCTCGGTTGATCCGTATCTGTTCGAAAACTTCAACACGGTCGACCGTGACCTTGCTTGGCGGNCAAGTTCCGCGCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGGCCACGTCAACGTGTGCGTCGATCGGTGCAAGGGTGTAATCTGCAGCAACGGTCAGACGGCCGTTCGGGACGGCGGAAAGCGCCGAGATCATGCCTCACCGGACGAACCGAACCAAGGTTGTACGGAACGTCACCCATTGACTACCTNTCACTCAACNGGTGAAACCTACGAACGCACGAATTGCCACGATCCAGACATACCCCGNGTCCGCGCAGATNTGATTCACGCACAACANCCG]




>consensus_3661#0
AATCCGAGGTAAATACGACTCGATCACGGAGAATGCCCGAACGTCACTCGGTATTGCGAT
CCGCCAGTGCGACAAGCTGGTATCGGGCGACCTTAACGTTAGCCCCGGGGCTCACCTGCA
GATGGAAATTTTCCTCGACAACCGTTCGGCACAATTTACGGGCTCGGCGTCAACTACATG
CTCGTCACCGAACCAAATACCAGGAGGAAACGACATTTTCAACGGCTGCTCGGTTGATCC
GTATCTGTTCGAAAACTTCAACACGGTCGACCGTGACCTTGCTTGGCGGNCAAGTTCCGC
GCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGGCCACGTCAACGTGTGCGTC
GATCGGTGCAAGGGTGTAATCTGCAGCAACGGTCAGACGGCCGTTCGGGACGGCGGAAAG
CGCCGAGATCATGCCTCACCGGACGAACCGAACCAAGGTTGTACGGAACGTCACCCATTG
ACTACCTNTCACTCAACNGGTGAAACCTACGAACGCACGAATTGCCACGATCCAGACATA
CCCCGNGTCCGCGCAGATNTGATTCACGCACAACANCCG

consensusID : consensus_3661#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence

                              [CGCAAGTTNATGGCGACAGCTGGTATCTGGGCGACTTAACGTTAGCCCCGGGGCTCACCTGCAGATGGAAATTTTCCTCGACAACCGTTCTGGCACCAATTTACGGGCTCGGCGTCAACTACATGCTCGTCACCGACACCAAATACCAGGAGGAAACGATCATTTTCAACGGCTGCTCGGTTGATCCGTATCTGTTCGAAAACTTCAACACGGTCGACGGTGACCTGCTGGCGG-CAAGTTCCGCGCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGGCCACCGTCAACGTTGTGCCGTCGATCGGTGCAAGGGTGTAAATCTGCAGNCAACCGGTCAGACGGCCGTTCGGACGGCGGGAAAGCCGCGAGATCAGTGCTGCACCGGCCGACCCGAACAAGGTGTACGAAGTCACCATGACTACCTTCATCAAGGTGAACTACGACGAGAATGCAGATCAGAATACCGTGTCGGAGATTGATCAGAAAATTCGCCAGCTGAAGCTCACCAACCAGA]

[+] EMBL AL692144             [CGCAAGTTNATGGCGACAGCTGGTATCTGGGCGACTTAACGTTAGCCCCGGGGCTCACCTGCAGATGGAAATTTTCCTCGACAACCGTTCTGGCACCAATTTACGGGCTCGGCGTCAACTACATGCTCGTCACCGACACCAAATACCAGGAGGAAACGATCATTTTCAACGGCTGCTCGGTTGATCCGTATCTGTTCGAAAACTTCAACACGGTCGACGGTGACCTGCTGGCGG CAAGTTCCGCGCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGGCCACCGTCAACGTTGTGCCGTCGATCGGTGCAAGGGTGTAAATCTGCAGNCAACCGGTCAGACGGCCGTTCGGACGGCGGGAAAGCCGCGAGATCAGTGCT                                                                                                                                        ]
[+] EMBL BX606694             [                                                                            CTTGAC ACCGTTC GGCACCAATTTACGGGCTCGGCGTCAACTACATGCTCGTCACCGACACCAAATACCAGGAGGAAACGATCATTTTCAACGGCTGCTCGGTTGATCCGTATCTGTTCGAAAACTTCAACACGGTCGACGGTGACCTGCTGGCGGCCAAGTTCCGCGCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGG CACCGTCAACG TGTG CGTCGATCGGTGCAAGGGTGT AATCTGCAG CAA CGGTCAGACGG CGTTCGGACGGCGG  AAG CGCGAGATCAGTGCTGCACCGGCCGACCCGAACAAGGTGTACGAAGTCACCATGACTACCTTCATCAAGGTGAACTACGACGAGAATGCAGATCAGAATACCGTGTCGGAGATTGATCAGAAAATTCGCCAGCTGAAGCTCACCAACCAGA]




>consensus_3661#1
CGCAAGTTNATGGCGACAGCTGGTATCTGGGCGACTTAACGTTAGCCCCGGGGCTCACCT
GCAGATGGAAATTTTCCTCGACAACCGTTCTGGCACCAATTTACGGGCTCGGCGTCAACT
ACATGCTCGTCACCGACACCAAATACCAGGAGGAAACGATCATTTTCAACGGCTGCTCGG
TTGATCCGTATCTGTTCGAAAACTTCAACACGGTCGACGGTGACCTGCTGGCGGCAAGTT
CCGCGCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGGCCACCGTCAACGTTG
TGCCGTCGATCGGTGCAAGGGTGTAAATCTGCAGNCAACCGGTCAGACGGCCGTTCGGAC
GGCGGGAAAGCCGCGAGATCAGTGCTGCACCGGCCGACCCGAACAAGGTGTACGAAGTCA
CCATGACTACCTTCATCAAGGTGAACTACGACGAGAATGCAGATCAGAATACCGTGTCGG
AGATTGATCAGAAAATTCGCCAGCTGAAGCTCACCAACCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3661#0      AATCCGAGGTAAATACGACTCGATCACGGAGAATGCCCGAACGTCACTCGGTATTGCGAT 60
consensus_3661#1      ------------------------------------------------------CGCAAG 6
                                                                             ** * 

consensus_3661#0      CCGCCAGTGCGACAAGCTGGTATCGGGCGACCTTAACGTTAGCCCCGGGGCTCACCTGCA 120
consensus_3661#1      TTNATGG--CGACA-GCTGGTATCTGGGCGACTTAACGTTAGCCCCGGGGCTCACCTGCA 63
                            *  ***** ********* **    *****************************

consensus_3661#0      GATGGAAATTTTCCTCGACAACCGTTC-GGCAC-AATTTACGGGCTCGGCGTCAACTACA 178
consensus_3661#1      GATGGAAATTTTCCTCGACAACCGTTCTGGCACCAATTTACGGGCTCGGCGTCAACTACA 123
                      *************************** ***** **************************

consensus_3661#0      TGCTCGTCACCGA-ACCAAATACCAGGAGGAAACGA-CATTTTCAACGGCTGCTCGGTTG 236
consensus_3661#1      TGCTCGTCACCGACACCAAATACCAGGAGGAAACGATCATTTTCAACGGCTGCTCGGTTG 183
                      ************* ********************** ***********************

consensus_3661#0      ATCCGTATCTGTTCGAAAACTTCAACACGGTCGACCGTGACCTTGCTTGGCGGNCAAGTT 296
consensus_3661#1      ATCCGTATCTGTTCGAAAACTTCAACACGGTCGACGGTGACCT--GCTGGCGGC-AAGTT 240
                      *********************************** *******    ******  *****

consensus_3661#0      CCGCGCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGGCCAC-GTCAACGT-G 354
consensus_3661#1      CCGCGCGTTCAAGTTCCCCGAGTCGACCTACGTCCAGTTCCGCGGCCACCGTCAACGTTG 300
                      ************************************************* ******** *

consensus_3661#0      TGC-GTCGATCGGTGCAAGGGTGTAA-TCTGCAGCAA--CGGTCAGACGGCCGTTCGGGA 410
consensus_3661#1      TGCCGTCGATCGGTGCAAGGGTGTAAATCTGCAGNCAACCGGTCAGACGGCCGTTCGGAC 360
                      *** ********************** *******  *  *******************  

consensus_3661#0      CGGCGGAAAGCGCCGAGATCA-TGCCTCACCGGACGAACCGAACCAAGGTTGTACGGAAC 469
consensus_3661#1      GGCGGGAAAGCCGCGAGATCAGTGCTGCACCGGCCGACCCGAAC--AAGGTGTACGAA-- 416
                       *  *******  ******** ***  ****** *** ******  * * ****** *  

consensus_3661#0      GTCACCCATTGACTACCTNTCACTCAACNGGTGAAACCTACGAACGCA---CGAATTGCC 526
consensus_3661#1      GTCACCA--TGACTACCTT-CATCAAGGTGAACTACGACGAGAATGCAGATCAGAATACC 473
                      ******   *********  **   *   *    *      *** ***   *  * * **

consensus_3661#0      ACGATCCAGACATACCCCGNGTCCGCGCAGATNTGATTCACGCACAACANCCG 579
consensus_3661#1      GTGTCGGAGATTGATCAGAAAATTCGCCAGCTGAAGCTCACCAACCAGA---- 522
                        *    ***   * *           *** *     ****  ** * *