These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1218 fasta sequence [CCGCCCAACCAACCAGTGCCATTCGGAAAGTTAACACATTTCACCGCTCACCGCGGTTCACGCCCGCTACACATGAAAGGGAACCATCTTTATGTCCCTTGTATTTTGAACCTGCTTCTATAGAACGTTTTCTGATCGGGAATATGATGCCAATCATTCGCTTCTGGCTTCAATTCTTTTCTGTAAGCCCGCTGTATACATCCAACCATTTTGCGTCGTCACCATCACTAGACTAGGGATTTAAATTTGTAAATTTGTAACGGTTAAATGCGTATTACCTATTTTTAATTTTCTTCCCTTTTTATGTATGTATCAACAATCTATTCTATACTTGTTGTACCGAAAACAACTATTCTCTCTCTCTCCCACTCACTTGCCGGCCCTCGTCCAGAAGGGTTCAAAAATGTTGTAAAATGGTTCACTTTCACGAATGCTCCACACAGAAATCCCCGAATTTGTTGCCCCAAATAACGATGATCGCATCGAACACGGAATAAGGACTGCGGTGAGAAAATGCAAAAGATTTCGTTTTTGGGTGGATTAAGTGTACACACACGCTCTTAAACAGAAGAAGAATTGAAATTGAAAACCACTTTACGGCGCGCGCCACTGTTACAGTCCCCAGTTGGGAGGAATCAAGCAAAGGAAACGGTTACAAATTTTTAGTGGCGAATGTGATGGTGATCTTTTAATAAGAAATGAAAGGGTGAAGCAGAAACAACACACAAAATTACATAAAGCCAGCTACGAGCTACGACGTTCAGTGCCGCTGCTTTATCTCATTCCAAATCGGTGCGCAAAACAAAGATGGGCGGACCGAATTCTCTTGCGGTACAGTGGAAAATAGAGAAGAAGAAAAAAAGTATGAGAATAGAAAACGAAACACGATCCCCAAGTAAATCATATTCATATAAAGTGAGAAAATAGAAGAGAAGAAAACATTCACACACACACACACACGCATAATAATGCATATAATGCATAATGCAAATAATTGTCAACCAAAATAGTGCGAGAGGTGAATCATTGGCTTTGGAAGCGAATAATAGATGAAAACGTTTAAAATCTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATCACACAGCCCACTCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACCGTTCGAATGCCCGCGTGTGCACCGGAAAGCGTGT] [+] EMBL BM617384 [CCGCCCAACCAACCAGTGCCATTCGGAAAGTTAACACATTTCACCGCTCACCGCGGTTCACGCCCGCTACACATGAAAGGGAACCATCTTTATGTCCCTTGTATTTTGAACCTGCTTCTATAGAACGTTTTCTGATCGGGAATATGATGCCAATCATTCGCTTCTGGCTTCAATTCTTTTCTGTAAGCCCGCTGTATACATCCAACCATTTTGCGTCGTCACCATCACTAGACTAGGGATTTAAATTTGTAAATTTGTAACGGTTAAATGCGTATTACCTATTTTTAATTTTCTTCCCTTTTTATGTATGTATCAACAATCTATTCTATACTTGTTGTACCGAAAACAACTATTCTCTCTCTCTCCCACTCACTTGCCGGCCCTCGTCCAGAAGGGTTCAAAAATGTTGTAAAATGGTTCACTTTCACGAATGCTCCACACAGAAATCCCCGAATTTGTTGCCCCAAATAACGATGATCGCATCGAACACGGAATAAGGACTGCGGTGAGAAAATGCAAAAGATTTCGTTTTTGGGTGGATTAAGTGTACACACACGCTCTTAAACAGAAGAAGAATTGAAATTGAAAACCACTTTACGGCGCGCGCCACTGTTACAGTCCCCAGTTGGGAGGAATCAAGCAAAGGAAACGGTTACAAATTTTTA ] [+] EMBL BX628467 [ GAAAATGCAAAAGATTTCGTTTTTGGGTGGATTAAGTGTACACACACGCTCTTAAACAGAAGAAGAATTGAAATTGAAAACCACTTTACGGCGCGCGCCACTGTTACAGTCCCCAGTTGGGAGGAATCAAGCAAAGGAAACGGTTACAAATTTTTAGTGGCGAATGTGATGGTGATCTTTTAATAAGAAATGAAAGGGTGAAGCAGAAACAACACACAAAATTACATAAAGCCAGCTACGAGCTACGACGTTCAGTGCCGCTGCTTTATCTCATTCCAAATCGGTGCGCAAAACAAAGATGGGCGGACCGAATTCTCTTGCGGTACAGTGGAAAATAGAGAAGAAGAAAAAAAGTATGAGAATAGAAAACGAAACACGATCCCCAAGTAAATCATATTCATATAAAGTGAGAAAATAGAAGAGAAGAAAACATTCACACACACACACACACGCATAATAATGCATATAATGCATAATGCAAATAATTGTCAACCAAAATAGTGCGAGAGGTGAATCATTGGCTTTGGAAGCGAATAATAGATGAAAACGTTTAAAATCTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATCACACAGCCCACTCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACCGTTCGAATGCCCGCGTGTGCACCGGAAAGCGTGT] consensusID : consensus_3666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CAGAATTCCCGAGGTTTCACGCGAGATCATCATGCTCCTCCTTCTCAAAATCATGCAAATAATTGTCAACCAAAATAGTGCGAGAGGTGAATCATTGGCTTTGTAAGCGAATAATAGATGAAAACGTTTAAAATCTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATCACACAGCCATCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACGTTCGAATGGCCGGTGTGCACCGGAAAGCGTGTGTGCAAACGAAGCAGAAAAAAACCGCCGTAGAAGCGGTAAAGAAACCGGCAAAGCATCGTTTGATAAGGTAAACTAAGCAAACCAACAAAATACTATACGGATGGAAGAAACGATGCAGGCATTTAGTAAAGAGAGAAGCAAAACCAACAACGGGAAAACCATTTGACAGCCAACACAACGCCGGACCCCAAATGTGCCCNATTGTTGCTGGTGGGCTAGTAACTGGGACAGTGGGTAAACAAAACACATTTAGGGTAAATCCCACCACACAACATTACCAGCGCA] [+] EMBL AL692219 [CAGAATTCCCGAGGTTTCACGCGAGATCATCATGCTCCTCCTTCTCAAAATCATGCAAATAATTGTCAACCAAAATAGTGCGAGAGGTGAATCATTGGCTTTGTAAGCGAATAATAGATGAAAACGTTTAAAATCTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATCACACAGCCATCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACGTTCGAATGGCCGGTGTGCACCGGAAAGCGTGTGTGCAAACGAAGCAGAAAAAAACCGCCGTAGAAGCGGTAAAGAAACCGGCAAAGCATCGTTTGATAAGGTAAACTAAGCAAACCAACAAAATACTATACGGATGGAAGAAACGATGCAGGCATTTAGTAAAGAGAGAAGCAAAACCAACAACGGGAAAACCATTTGACAGCCAACACAACGCCGGACCCCAAATGTGCCCNATTGTTGCTGGTGGGCTAGTAACTGGGACAGTGGGTAAACAAAACACATTTAGGGTAAATCCCACCACACAACATTACCAGCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3666#0 CCGCCCAACCAACCAGTGCCATTCGGAAAGTTAACACATTTCACCGCTCACCGCGGTTCA 60 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CGCCCGCTACACATGAAAGGGAACCATCTTTATGTCCCTTGTATTTTGAACCTGCTTCTA 120 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 TAGAACGTTTTCTGATCGGGAATATGATGCCAATCATTCGCTTCTGGCTTCAATTCTTTT 180 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CTGTAAGCCCGCTGTATACATCCAACCATTTTGCGTCGTCACCATCACTAGACTAGGGAT 240 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 TTAAATTTGTAAATTTGTAACGGTTAAATGCGTATTACCTATTTTTAATTTTCTTCCCTT 300 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 TTTATGTATGTATCAACAATCTATTCTATACTTGTTGTACCGAAAACAACTATTCTCTCT 360 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CTCTCCCACTCACTTGCCGGCCCTCGTCCAGAAGGGTTCAAAAATGTTGTAAAATGGTTC 420 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 ACTTTCACGAATGCTCCACACAGAAATCCCCGAATTTGTTGCCCCAAATAACGATGATCG 480 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CATCGAACACGGAATAAGGACTGCGGTGAGAAAATGCAAAAGATTTCGTTTTTGGGTGGA 540 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 TTAAGTGTACACACACGCTCTTAAACAGAAGAAGAATTGAAATTGAAAACCACTTTACGG 600 consensus_3666#1 -------------------------------------------CAGAATTCCCGAGGTTT 17 ** * * consensus_3666#0 CGCGCGCCACTGTTACAGTCCCCAGTTGGGAGGAATCAAGCAAAGGAAACGGTTACAAAT 660 consensus_3666#1 CACGCGAGATCATCATGCTCCTCCTTCTCAA--AATCATGCAAAT-AATTGTCAACCAAA 74 * **** * * * *** * * * ***** ***** ** * ** ** consensus_3666#0 TTTTAGTGGCGAATGTGATGGTGATCTTTTAA-----TAAGAAATGAAAGGGTGAAGCAG 715 consensus_3666#1 ATAGTGCGAGAGGTGAATCATTGGCTTTGTAAGCGAATAATAGATGAAAACGTTTAAAAT 134 * * * ** ** ** *** *** * ****** ** * * consensus_3666#0 AAACAACACACAAAATTACATAAAGCCAGCTACGAGCTACGACGTTCAGTGCCGCT-GCT 774 consensus_3666#1 CTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCT 194 * ** *** *** * * *** **** ** * * * * *** consensus_3666#0 TTATCTCATTCCAAATCGGTGCGCAAAACAAAGATGGGCGGACCGAATTCTCTTGCGGTA 834 consensus_3666#1 TCATCACACAGCCA-TCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACGTTC 253 * *** ** * * ** * ** * * * ** * * * ** * consensus_3666#0 CAGTGGAAAATAGAGAAGAAGAAAAAAAGTATGAGAATAGAAAACGAAACACGATCCCCA 894 consensus_3666#1 GAATGGC---CGGTGTGCACCGGAAAGCGTGTGTGCAAACGAAGCAGAAAAAAACCGCCG 310 * *** * * * *** ** ** * * * ** * ** * * * ** consensus_3666#0 AGTAAATCATATTCATATAAAGTGAGAAAATAGAAGAGAAGAAAACATTCACACACACAC 954 consensus_3666#1 TAGAAGCGGT----AAAGAAACCGGCAAAGCATCGTTTGATAAGGTAAAC-TAAGCAAAC 365 ** * * * *** * *** * * ** * * * ** ** consensus_3666#0 ACACACGCATAATA-ATGCATATAATGCATAATGCAAATAATTGTCAACCAAAATAGTGC 1013 consensus_3666#1 CAACA-AAATACTATACGGATGGAAGAAACGATGCAGGCATTTAGTAAAGAGAGAAGCAA 424 *** *** ** * * ** ** * ***** * ** ** * * ** consensus_3666#0 GAGAGGTGAATCATTGGC--TTTGGAAGCGAATAATAGATGAAAACGTTTAAAATCTCCG 1071 consensus_3666#1 AACCAACAACGGGAAAACCATTTGACAGCCAACACAACGCCGGACCCCAAATGTGCCCNA 484 * * * **** *** ** * * * * * * * consensus_3666#0 TAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATC 1131 consensus_3666#1 TTGTTGCTGGTGGGCTAGTAACTGGGACAGTGGGTAAACAAAACACATTTAGGGTAAATC 544 * ** *** ** * * * * *** * * * * * *** consensus_3666#0 ACACAGCCCACTCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACCGTTCGAA 1191 consensus_3666#1 CCACCACACAA-CATTACCAGCGCA----------------------------------- 568 *** * ** * ** * * consensus_3666#0 TGCCCGCGTGTGCACCGGAAAGCGTGT 1218 consensus_3666#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||