|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1218 fasta sequence
[CCGCCCAACCAACCAGTGCCATTCGGAAAGTTAACACATTTCACCGCTCACCGCGGTTCACGCCCGCTACACATGAAAGGGAACCATCTTTATGTCCCTTGTATTTTGAACCTGCTTCTATAGAACGTTTTCTGATCGGGAATATGATGCCAATCATTCGCTTCTGGCTTCAATTCTTTTCTGTAAGCCCGCTGTATACATCCAACCATTTTGCGTCGTCACCATCACTAGACTAGGGATTTAAATTTGTAAATTTGTAACGGTTAAATGCGTATTACCTATTTTTAATTTTCTTCCCTTTTTATGTATGTATCAACAATCTATTCTATACTTGTTGTACCGAAAACAACTATTCTCTCTCTCTCCCACTCACTTGCCGGCCCTCGTCCAGAAGGGTTCAAAAATGTTGTAAAATGGTTCACTTTCACGAATGCTCCACACAGAAATCCCCGAATTTGTTGCCCCAAATAACGATGATCGCATCGAACACGGAATAAGGACTGCGGTGAGAAAATGCAAAAGATTTCGTTTTTGGGTGGATTAAGTGTACACACACGCTCTTAAACAGAAGAAGAATTGAAATTGAAAACCACTTTACGGCGCGCGCCACTGTTACAGTCCCCAGTTGGGAGGAATCAAGCAAAGGAAACGGTTACAAATTTTTAGTGGCGAATGTGATGGTGATCTTTTAATAAGAAATGAAAGGGTGAAGCAGAAACAACACACAAAATTACATAAAGCCAGCTACGAGCTACGACGTTCAGTGCCGCTGCTTTATCTCATTCCAAATCGGTGCGCAAAACAAAGATGGGCGGACCGAATTCTCTTGCGGTACAGTGGAAAATAGAGAAGAAGAAAAAAAGTATGAGAATAGAAAACGAAACACGATCCCCAAGTAAATCATATTCATATAAAGTGAGAAAATAGAAGAGAAGAAAACATTCACACACACACACACACGCATAATAATGCATATAATGCATAATGCAAATAATTGTCAACCAAAATAGTGCGAGAGGTGAATCATTGGCTTTGGAAGCGAATAATAGATGAAAACGTTTAAAATCTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATCACACAGCCCACTCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACCGTTCGAATGCCCGCGTGTGCACCGGAAAGCGTGT]
[+] EMBL BM617384 [CCGCCCAACCAACCAGTGCCATTCGGAAAGTTAACACATTTCACCGCTCACCGCGGTTCACGCCCGCTACACATGAAAGGGAACCATCTTTATGTCCCTTGTATTTTGAACCTGCTTCTATAGAACGTTTTCTGATCGGGAATATGATGCCAATCATTCGCTTCTGGCTTCAATTCTTTTCTGTAAGCCCGCTGTATACATCCAACCATTTTGCGTCGTCACCATCACTAGACTAGGGATTTAAATTTGTAAATTTGTAACGGTTAAATGCGTATTACCTATTTTTAATTTTCTTCCCTTTTTATGTATGTATCAACAATCTATTCTATACTTGTTGTACCGAAAACAACTATTCTCTCTCTCTCCCACTCACTTGCCGGCCCTCGTCCAGAAGGGTTCAAAAATGTTGTAAAATGGTTCACTTTCACGAATGCTCCACACAGAAATCCCCGAATTTGTTGCCCCAAATAACGATGATCGCATCGAACACGGAATAAGGACTGCGGTGAGAAAATGCAAAAGATTTCGTTTTTGGGTGGATTAAGTGTACACACACGCTCTTAAACAGAAGAAGAATTGAAATTGAAAACCACTTTACGGCGCGCGCCACTGTTACAGTCCCCAGTTGGGAGGAATCAAGCAAAGGAAACGGTTACAAATTTTTA ]
[+] EMBL BX628467 [ GAAAATGCAAAAGATTTCGTTTTTGGGTGGATTAAGTGTACACACACGCTCTTAAACAGAAGAAGAATTGAAATTGAAAACCACTTTACGGCGCGCGCCACTGTTACAGTCCCCAGTTGGGAGGAATCAAGCAAAGGAAACGGTTACAAATTTTTAGTGGCGAATGTGATGGTGATCTTTTAATAAGAAATGAAAGGGTGAAGCAGAAACAACACACAAAATTACATAAAGCCAGCTACGAGCTACGACGTTCAGTGCCGCTGCTTTATCTCATTCCAAATCGGTGCGCAAAACAAAGATGGGCGGACCGAATTCTCTTGCGGTACAGTGGAAAATAGAGAAGAAGAAAAAAAGTATGAGAATAGAAAACGAAACACGATCCCCAAGTAAATCATATTCATATAAAGTGAGAAAATAGAAGAGAAGAAAACATTCACACACACACACACACGCATAATAATGCATATAATGCATAATGCAAATAATTGTCAACCAAAATAGTGCGAGAGGTGAATCATTGGCTTTGGAAGCGAATAATAGATGAAAACGTTTAAAATCTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATCACACAGCCCACTCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACCGTTCGAATGCCCGCGTGTGCACCGGAAAGCGTGT]
consensusID : consensus_3666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[CAGAATTCCCGAGGTTTCACGCGAGATCATCATGCTCCTCCTTCTCAAAATCATGCAAATAATTGTCAACCAAAATAGTGCGAGAGGTGAATCATTGGCTTTGTAAGCGAATAATAGATGAAAACGTTTAAAATCTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATCACACAGCCATCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACGTTCGAATGGCCGGTGTGCACCGGAAAGCGTGTGTGCAAACGAAGCAGAAAAAAACCGCCGTAGAAGCGGTAAAGAAACCGGCAAAGCATCGTTTGATAAGGTAAACTAAGCAAACCAACAAAATACTATACGGATGGAAGAAACGATGCAGGCATTTAGTAAAGAGAGAAGCAAAACCAACAACGGGAAAACCATTTGACAGCCAACACAACGCCGGACCCCAAATGTGCCCNATTGTTGCTGGTGGGCTAGTAACTGGGACAGTGGGTAAACAAAACACATTTAGGGTAAATCCCACCACACAACATTACCAGCGCA]
[+] EMBL AL692219 [CAGAATTCCCGAGGTTTCACGCGAGATCATCATGCTCCTCCTTCTCAAAATCATGCAAATAATTGTCAACCAAAATAGTGCGAGAGGTGAATCATTGGCTTTGTAAGCGAATAATAGATGAAAACGTTTAAAATCTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATCACACAGCCATCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACGTTCGAATGGCCGGTGTGCACCGGAAAGCGTGTGTGCAAACGAAGCAGAAAAAAACCGCCGTAGAAGCGGTAAAGAAACCGGCAAAGCATCGTTTGATAAGGTAAACTAAGCAAACCAACAAAATACTATACGGATGGAAGAAACGATGCAGGCATTTAGTAAAGAGAGAAGCAAAACCAACAACGGGAAAACCATTTGACAGCCAACACAACGCCGGACCCCAAATGTGCCCNATTGTTGCTGGTGGGCTAGTAACTGGGACAGTGGGTAAACAAAACACATTTAGGGTAAATCCCACCACACAACATTACCAGCGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3666#0 CCGCCCAACCAACCAGTGCCATTCGGAAAGTTAACACATTTCACCGCTCACCGCGGTTCA 60
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 CGCCCGCTACACATGAAAGGGAACCATCTTTATGTCCCTTGTATTTTGAACCTGCTTCTA 120
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 TAGAACGTTTTCTGATCGGGAATATGATGCCAATCATTCGCTTCTGGCTTCAATTCTTTT 180
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 CTGTAAGCCCGCTGTATACATCCAACCATTTTGCGTCGTCACCATCACTAGACTAGGGAT 240
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 TTAAATTTGTAAATTTGTAACGGTTAAATGCGTATTACCTATTTTTAATTTTCTTCCCTT 300
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 TTTATGTATGTATCAACAATCTATTCTATACTTGTTGTACCGAAAACAACTATTCTCTCT 360
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 CTCTCCCACTCACTTGCCGGCCCTCGTCCAGAAGGGTTCAAAAATGTTGTAAAATGGTTC 420
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 ACTTTCACGAATGCTCCACACAGAAATCCCCGAATTTGTTGCCCCAAATAACGATGATCG 480
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 CATCGAACACGGAATAAGGACTGCGGTGAGAAAATGCAAAAGATTTCGTTTTTGGGTGGA 540
consensus_3666#1 ------------------------------------------------------------
consensus_3666#0 TTAAGTGTACACACACGCTCTTAAACAGAAGAAGAATTGAAATTGAAAACCACTTTACGG 600
consensus_3666#1 -------------------------------------------CAGAATTCCCGAGGTTT 17
** * *
consensus_3666#0 CGCGCGCCACTGTTACAGTCCCCAGTTGGGAGGAATCAAGCAAAGGAAACGGTTACAAAT 660
consensus_3666#1 CACGCGAGATCATCATGCTCCTCCTTCTCAA--AATCATGCAAAT-AATTGTCAACCAAA 74
* **** * * * *** * * * ***** ***** ** * ** **
consensus_3666#0 TTTTAGTGGCGAATGTGATGGTGATCTTTTAA-----TAAGAAATGAAAGGGTGAAGCAG 715
consensus_3666#1 ATAGTGCGAGAGGTGAATCATTGGCTTTGTAAGCGAATAATAGATGAAAACGTTTAAAAT 134
* * * ** ** ** *** *** * ****** ** * *
consensus_3666#0 AAACAACACACAAAATTACATAAAGCCAGCTACGAGCTACGACGTTCAGTGCCGCT-GCT 774
consensus_3666#1 CTCCGTAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCT 194
* ** *** *** * * *** **** ** * * * * ***
consensus_3666#0 TTATCTCATTCCAAATCGGTGCGCAAAACAAAGATGGGCGGACCGAATTCTCTTGCGGTA 834
consensus_3666#1 TCATCACACAGCCA-TCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACGTTC 253
* *** ** * * ** * ** * * * ** * * * ** *
consensus_3666#0 CAGTGGAAAATAGAGAAGAAGAAAAAAAGTATGAGAATAGAAAACGAAACACGATCCCCA 894
consensus_3666#1 GAATGGC---CGGTGTGCACCGGAAAGCGTGTGTGCAAACGAAGCAGAAAAAAACCGCCG 310
* *** * * * *** ** ** * * * ** * ** * * * **
consensus_3666#0 AGTAAATCATATTCATATAAAGTGAGAAAATAGAAGAGAAGAAAACATTCACACACACAC 954
consensus_3666#1 TAGAAGCGGT----AAAGAAACCGGCAAAGCATCGTTTGATAAGGTAAAC-TAAGCAAAC 365
** * * * *** * *** * * ** * * * ** **
consensus_3666#0 ACACACGCATAATA-ATGCATATAATGCATAATGCAAATAATTGTCAACCAAAATAGTGC 1013
consensus_3666#1 CAACA-AAATACTATACGGATGGAAGAAACGATGCAGGCATTTAGTAAAGAGAGAAGCAA 424
*** *** ** * * ** ** * ***** * ** ** * * **
consensus_3666#0 GAGAGGTGAATCATTGGC--TTTGGAAGCGAATAATAGATGAAAACGTTTAAAATCTCCG 1071
consensus_3666#1 AACCAACAACGGGAAAACCATTTGACAGCCAACACAACGCCGGACCCCAAATGTGCCCNA 484
* * * **** *** ** * * * * * * *
consensus_3666#0 TAACGATAAAACACAGAGAAACAGGAGCGAGAGACAGAGAAAGATCCTCTTAGCTTCATC 1131
consensus_3666#1 TTGTTGCTGGTGGGCTAGTAACTGGGACAGTGGGTAAACAAAACACATTTAGGGTAAATC 544
* ** *** ** * * * * *** * * * * * ***
consensus_3666#0 ACACAGCCCACTCCCCACACACACGTTGTTACACCTGTGCGGACACGCCGACCGTTCGAA 1191
consensus_3666#1 CCACCACACAA-CATTACCAGCGCA----------------------------------- 568
*** * ** * ** * *
consensus_3666#0 TGCCCGCGTGTGCACCGGAAAGCGTGT 1218
consensus_3666#1 ---------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||