cluster # 3668

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3668 cluster # 3668 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3668#0 length = 871 sequences # 2

consensus_3668#1 length = 541 sequences # 1

consensusID : consensus_3668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 871
fasta sequence

                              [TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCGAACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTGCTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAGCTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGCAGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGTGCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCACACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTAAACGTCACGCACGGTTACTGAGAAGACACA]

[+] EMBL CNS08J7L             [TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCGAACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTGCTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAGCTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGCAGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGTGCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCACACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTAAACGTCACGCACGGTTACTGAGAAGACACA]
[-] EMBL BX611169             [                                                                                                                                                                                                                                                               CAGTTGCCCTGAACAAAGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACGCTGTGGGCAGTAGAGTGCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTg                              ]




>consensus_3668#0
TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCG
AACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTG
CTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAG
CTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGC
AGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCA
GTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTG
GTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCT
CGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGTTA
GGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGTCC
ATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGA
GGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGTGCG
GTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTGCGA
CAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCACAC
GCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGT
AAACGTCACGCACGGTTACTGAGAAGACACA

consensusID : consensus_3668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [TGGGACGNCCGGACAACAAGGTAGAGATATTGTTTTCACTCGCACCGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGGCTGAGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACCTGTGGCATTAGAGTCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGTGAGTATAAACCTNGGAT]

[-] EMBL AL692260             [TGGGACGNCCGGACAACAAGGTAGAGATATTGTTTTCACTCGCACCGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGGCTGAGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACCTGTGGCATTAGAGTCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGTGAGTATAAACCTNGGAT]




>consensus_3668#1
TGGGACGNCCGGACAACAAGGTAGAGATATTGTTTTCACTCGCACCGCAGATACTCCCTG
GTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCT
CGTTCGCCCGCGTTGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAG
GATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCA
TCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGGCTGAG
TTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACCTGTGGCATTAGAGTCCGTTTT
GTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTT
TGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGAC
GGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGTGAGTATAAACCTNGGA
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3668#0      TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCG 60
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      AACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTG 120
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      CTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAG 180
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      CTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGC 240
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      AGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCA 300
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      GTGGGACGGCCGGACA-CAAGGTAGAGATAGTTGTTTTCACTCGCAC-GCAGATACTCCC 358
consensus_3668#1      -TGGGACGNCCGGACAACAAGGTAGAGATA-TTGTTTTCACTCGCACCGCAGATACTCCC 58
                       ******* ******* ************* **************** ************

consensus_3668#0      TGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGT 418
consensus_3668#1      TGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGT 118
                      ************************************************************

consensus_3668#0      CTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGT 478
consensus_3668#1      CTCGTTCGCCCGCGTTGGG-TTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGT 177
                      ******************* ** ***************** *******************

consensus_3668#0      TAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGT 538
consensus_3668#1      TAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGT 237
                      ************************************** *********************

consensus_3668#0      CCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTG-TGACAGACACGGGGC 597
consensus_3668#1      CCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGG-C 296
                      ************************ ******************* ************* *

consensus_3668#0      TGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGT 657
consensus_3668#1      TGAG-TTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAAC-CTGTGG-CATTAGAGT 353
                      **** *********************** ************** ****** ** ******

consensus_3668#0      GCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTG 717
consensus_3668#1      CCG-TTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTG 412
                       ** ************************* *********** ******************

consensus_3668#0      CGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCA 777
consensus_3668#1      CGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCA 472
                      *********************************** ************** *********

consensus_3668#0      CACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATG 837
consensus_3668#1      CACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATG-TGAGTATA 531
                      ******************** ****************************** ******* 

consensus_3668#0      AGTAAACGTCACGCACGGTTACTGAGAAGACACA 871
consensus_3668#1      AACCTNGGAT------------------------ 541
                      *      *