These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 960 fasta sequence [TAAATTTGTTCACAAGCTTTAGGCGTCTGTCTTCCATCCATCCAGGGAGGTTGCAGGATTTTCCAAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACCCTGATGTTTCATTTTTTTTAATGATGTTTAATTTCCTAACAATAATTTTTAATTTCCCCAGCATGATTTTCAACACGCCTCAAGCTGGACTGAGTTTGACAGTGCTTTGTGATGTGTTGAAAATCATGTGTAAAAACTGAAATTTCATTATGAGGCAATTACACCACTTGACAGCTGTTGAAAAACATCTTGGAGGCGGTGAATAATTATGTGCACAATCGAAAGTGATGTGGAAAACCCGGTAATAGAGTATCTCGGGGAAAGTCTGTGTTTTTTTCTAAATTATTGTGATACAAC-GGCCTGATCAATTCTTACAGTGTTTTCCCAGTCAATTTCCAATGTCAAC-ACATCTCACAACACTTGCGAGATGTTTTTCAGCAAACTGTCAAGTATTGCATTTGCATCACAATAATGTTTCAGTTCTTCCATATGATTTTCAAAACATCTCAAGCTGGATAGAGTTTGACAGCTCTTTGTGATGTGTTGAATGTCATGTGGACGAACTGAAATTTTATTGTGAAGCAAATACACCATTTGGATATCTGTTGAAAAACATCTTGGAGGAGGTGGTGAATTAATGATGTATACATTCGAAAGTGATTTGGAAAACCCTGTAATAATTCAATCGTAAGACAGGTACTGAACTCATTCAAAAAAATTGTAAAAATGCTTTTCGATATCATAAGTTAACCGCATACATTAAATTGCGTGATTTGTTGAGCTAGCAGGTATGCTTCCCAGTACTAAACGATACAATCGAAACTGGGAATCACTGTATACGATTATTTGACTAATAATTGTTTGCACGCTGGAAATGTGTTTCAAATTTATAAAGTCAAC] [+] EMBL CNS08TK7 [TAAATTTGTTCACAAGCTTTAGGCGTCTGTCTTCCATCCATCCAGGGAGGTTGCAGGATTTTCCAAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACCCTGATGTTTCATTTTTTTTAATGATGTTTAATTTCCTAACAATAATTTTTAATTTCCCCAGCATGATTTTCAACACGCCTCAAGCTGGACTGAGTTTGACAGTGCTTTGTGATGTGTTGAAAATCATGTGTAAAAACTGAAATTTCATTATGAGGCAATTACACCACTTGACAGCTGTTGAAAAACATCTTGGAGGCGGTGAATAATTATGTGCACAATCGAAAGTGATGTGGAAAACCCGGTAATAGAGTATCTCGGGGAAAGTCTGTGTTTTTTTCTAAATTATTGTGATACAAC GGCCTGATCAATTCTTACAGTGTTTTCCCAGTCAATTTCCAATGTCAAC ACATCTCACAACACTTGCGAGATGTTTTTCAGCAAACTGTCAAGTATTGCATTTGCATCACAATAATGTTTCAGTTCTTCCATATGATTTTCAAAACATCTCAAGCTGGATAGAGTTTGACAGCTCTTTGTGATGTGTTGAATGTCATGTGGACGAACTGAAATTTTATTGTGAAGCAAATACACCATTTGGATATCTGTTGAAAAACATCTTGGAGGAGGTGGTGAATTAATGATGTATACATTCGAAAGTGATTTGGAAAACCCTGTAATAATTCAATCGTAAGACAGGTACTGAACTCATTCAAAAAAATTGTAAAAATGCTTTTCGATATCATAAGTTAACCGCATACATTAAATTGCGTGATTTGTTGAGCTAGCAGGTATGCTT ] [-] EMBL CNS08TK8 [ AATTTCCTAAAAATAATTTTTAATTTCCCCAGCATGATTTTCAACACGCCTCAAGCTGGACTGAGTTTGACAGTGCTTTGTGATGTGTTGAAAATCATGTGTAAAAACTGAAATTTCATTATGAGGCAATTACACCACTTAACAGCTGTTGAAAAACATCTTGGAGGCGGTGAATAATTATGTGCACAATCGAAAGTGATGTGGAAAACCCGGTAATAGAGTATCTCGGGGAAAGTCTGTGTTTTTTTCTAAATTATTGTGATACAACGGGCCTGATCAATTCTTACAGTGTTTTCCCAGTCAATTTCCAATGTCAACAACATCTCACAAAACTTGCGAGATGTTTTTCAGCAAACTGTCAAGTATTGCATTTGCATCACAATAATGTTTCAGTTCTTCCATATGATTTTCAAAACATCTCAAGCTGGATAGAGTTTAACAGCTCTTTGTGATGTGTTGAATGTCATGTGGACGAACTGAAATTTTATTGTGAAGCAAATACACCATTT GATATCTGTTGAAAAACATCTTGGAGGAGGTGGTGAATTAATGATGTATACATTCGAAAGTGATTTGGAAAACCCTGTAATAATTCAATCGTAAGACAGGTACTGAACTCATTCAAAAAAATTGTAAAAATGCTTTTCGATATCATAAGTTAACCGCATACATTAAATTGCGTGATTTGTTGAGCTAGCAGGTAAGCTTCCCAGTACTAAACGATACAATCGAAACTGGGAATCACTGTATACGATTATTTGACTAATAATTGTTTGCACGCTGGAAATGTGTTTCAAATTTATAAAGTCAAC] consensusID : consensus_3672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [CCGGCTAGTTGTGTTCACAGCGAGCGCATATGAATTCGAGGAAGATTACACGATCACAGCAGAAGTGCTTGCCCAGCTGGTACCAAACGCCCGGCGGGTCGAAATCGGTTCCAGCAAACCGTTACATGACAACGTCTTTACGCAACCGTATCAATTTTTCAAATCGAGAACCGCTTTCGGTTATCTTTTGCCTACCGATCACCATAGCAAGTGGGAGTTGCGCCAATACAACCATCGGTACATACTTCCCTTACGGTGAGGTAAAGAAGTGTCCAATATGTGGTGGGTGACAATTCAAAGTTCGTTACAATATAGATTGTACCTTTTTCCACAATGAACATTTGTCATGTTCATGTGCTGCCATGTCTAGAAAAGTAGTTATTCAAATTTGTTCAACAAGCTTTAGGCGTCTGTCTTCTATCCATCCAGGAAGGTTGCAAGTCAGAAGATACAGGATTTTCCTAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACCCTGATGTTTCATTTTTTTTATGATGGTTAATTTCCTAACAAATAATTTTTAATTTCCCAAG] [+] EMBL BM609971 [CCGGCTAGTTGTGTTCACAGCGAGCGCATATGAATTCGAGGAAGATTACACGATCACAGCAGAAGTGCTTGCCCAGCTGGTACCAAACGCCCGGCGGGTCGAAATCGGTTCCAGCAAACCGTTACATGACAACGTCTTTACGCAACCGTATCAATTTTTCAAATCGAGAACCGCTTTCGGTTATCTTTTGCCTACCGATCACCATAGCAAGTGGGAGTTGCGCCAATACAACCATCGGTACATACTTCCCTTACGGTGAGGTAAAGAAGTGTCCAATATGTGGTGGGTGACAATTCAAAGTTCGTTACAATATAGATTGTACCTTTTTCCACAATGAACATTTGTCATGTTCATGTGCTGCCATGTCTAGAAAAGTAGTTATTCAAATTTGTTCAACAAGCTTTAGGCGTCTGTCTTCTATCCATCCAGGAAGGTTGCAAGTCAGAAGATACAGGATTTTCCTAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACCCTGATGTTTCATTTTTTTTATGATGGTTAATTTCCTAACAAATAATTTTTAATTTCCCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3672#0 TAAATTTGTTCACAAGCTTTAGGCGTCTGTCTTCCATCCATCCAGGGAGGTTGCAGGATT 60 consensus_3672#1 ------------------------------------------------------------ consensus_3672#0 TTCCAAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACC 120 consensus_3672#1 ------------------------------------------------------------ consensus_3672#0 CTGATGTTTCATTTTTTTTAATGATGTTTAATTTCCTAACAATAATTTTTAATTTCCCCA 180 consensus_3672#1 ------------------------------------------------------------ consensus_3672#0 GCATGATTTTCAACACGCCTCAAGCTGGACTGAGTTTGACAGTGCTTTGTGATGTGTTGA 240 consensus_3672#1 ------------------------------------------------------------ consensus_3672#0 AAATCATGTGTAAAAACTGAAATTTCATTATGAGGCAATTACACCACTTGACAGCTGTTG 300 consensus_3672#1 ------------------------------------------------------------ consensus_3672#0 AAAAACATCTTGGAGGCGGTGAATAATTATGTGCACAATCGAAAGTGATGTGGAAAACCC 360 consensus_3672#1 ------------------CCGGCTAGTTGTGTTCACAG-CGAGCGC-ATATGAATTCGAG 40 * ** ** *** **** *** * ** ** * consensus_3672#0 GGTAAT-AGAGTATCTCGGGGAAAGTCTGTGTTTTTTTCTAAATTATTGTGATACAACGG 419 consensus_3672#1 GAAGATTACACGATCACAGCAGAAGTGCTTGCCCAGCTGGTACCAAACGCCCGGCGG-GT 99 * ** * * *** * * **** ** * * * * * * consensus_3672#0 CCTGATCAATTCTTACAGTGTTTTCCCAGTCAATTTCCAATGTCAACACATCTCACAACA 479 consensus_3672#1 CGAAATCGGTTCCAGCAAACCGTTACATGACAACGTCTTTACGCAAC-CGTATCA----A 154 * *** *** ** ** * * *** ** **** * * *** * consensus_3672#0 CTTGCGAGATGTTTTTCAGCAAACTGTCAAGTATTGCATTTGCATCACAATAAT--GTTT 537 consensus_3672#1 TTTTTCAAATCGAGAACCGCTTTCGGTTATCTTTTGCCTACCGATCACCATAGCAAGTGG 214 ** * ** * ** * ** * * **** * ***** *** ** consensus_3672#0 CAGTTCTTCCA-TATGATTTTCAAAACAT-CTCAAGCTGGATAGAGTTTGACAGCTCTTT 595 consensus_3672#1 GAGTTGCGCCAATACAACCATCGGTACATACTTCCCTTACGGTGAGGTAAAGAAGTGTCC 274 **** *** ** * ** **** ** * *** * * * * * consensus_3672#0 GTGATGTGTTGAATGTCATGTGGACGAACTGAAATTTTATTGTGAAGCAAAT-ACACCAT 654 consensus_3672#1 AATATGTGGTGGGTGACA---------ATTCAAAGTTCGTTACAATATAGATTGTACCTT 325 ***** ** ** ** * * *** ** ** * * ** *** * consensus_3672#0 TTGGATATCTGTTGAAAAACATCTTGGAGGAGGTGGTGAATTAATGATGTATACATTCGA 714 consensus_3672#1 TT-----TCCAC-AATGAACATTT-----GTCATGTTCATGTGCTGCCATGTCTAG--AA 372 ** ** * ***** * * ** * * * ** * * * * consensus_3672#0 AAGTGATT-TGGAAAACCCTGTAATAA--TTCAATCGTAAGACAGGTACTGAACTCATTC 771 consensus_3672#1 AAGTAGTTATTCAAATTTGTTCAACAAGCTTTAGGCGTCTG-----TCTTCTATCCATCC 427 **** ** * *** * ** ** ** * *** * * * * *** * consensus_3672#0 AAAAAAATTGTAAAAATGCTTTTCGATATCATAAGTTAACCGCATACATTAAATTGCGTG 831 consensus_3672#1 AGGAAGGTTGCAAG--------------TCAGAAGATA-CAGGATTTTCCTAGTCAC--- 469 * ** *** ** *** *** ** * * ** * * * consensus_3672#0 ATTTGTTGAGCTAGCAGGTATGCTTCCCAGTACTAAACGATACAATCGAAACTGGGAATC 891 consensus_3672#1 -TTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTC--CACATTCCAACCCTGATGTT 526 *** * * * ** * * *** ** ** * *** ** ** * * * consensus_3672#0 ACTGTATACGATTATTTGACTAATAATTGTTTGCACGCTGGAAATGTGTTTCAAATTTAT 951 consensus_3672#1 -----------TCATTTTTTTTATGATGGTTAATTTCCTAACAAATAATTTTTAATTTCC 575 * **** * ** ** *** ** ** *** ***** consensus_3672#0 AAAGTCAAC 960 consensus_3672#1 CAAG----- 579 *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||