cluster # 3676

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Anopheles gambiae
cluster # 3676 cluster # 3676 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3676#0 length = 1102 sequences # 2

consensus_3676#1 length = 582 sequences # 1

consensusID : consensus_3676#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1102
fasta sequence

                              [GAACATCATGAGCATCGAATGCATGCATGATAAAAACACACAAAACTACAGAATATATATTAAAAAAAAACACAAAAACAAAACAAAAAACAATTTACAAAACTATACAGAAACTAACTTAAGTGAGCAAAAAGAAAAAGAAAAAAAAAGAAAGGAAACGGGAATCTCCCGAAAATATGTCGAATGTTATAACAAAAAGAAACAAACAGAGGAAGGGGAGATAACAAAGTGTAGGAAACTGTACTTCCTCTAAGGAAACTTTATATATATATGTATGTGTAGGACAGCAGCAAATCCGTCGCAAATCCGAGCTGTAGTTAAGCGAAGGAGGGGGGGGGGGGGTACTGGGGAGCGGAACAAACACATGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGGTCGGAAATGGAGGAATGGCTTAAGAGTAAGTGTTGTTTCTGTACCGAAAGAATCACGCAAAGCTGGATCAATATAGTGTGTGTGTCAGTACGATCGATACGGTTGCAGTGCTCGAGGTGGTTGGGGTTGTAATCGCCGGGTTGTTAAGAAACAGTGTGATGATGCTTTTAAAAAGAAGAAGAAACCGCTTGACCGCCGTACACAGTGAACGGTCACACCGTCAAACTAGATACACACTAAAACACACACACATTGTACATTGTTTCTCTACTGCTGTATATCTTCTGTTTTGTGTTTTCTTCACTTCGTTTTATCGATCTTAAGAAGAAGCTGTAACTGTTAAGTTTTTGGTGGTAATATTGGCAGAGTATATATATATACATGTATTAATATAGTGTAACAAAAAAAAAACAAACCAGAGATGTAGAAATCATGTGAAGATGAAATATATATATATATATATACATATAGTTGTTAAGAAAAGGGTCTACGTGAACATGATACAAAACATATGCAAACCGGCGGAGGGTCATCAGTGAAAAGCGAGAAGTCATTCCTTCTTCTTTTGTGCACTATTCTCAACCTGGCTAGGAAAAGGAAAGGCGATAGAAGAAGAAGTTTTGGCTTCCATGGTTTAATTTATCGTTTCGAAGCCCGAAAGGGAAAGGGAAGAGAACAACA]

[+] EMBL BX627270             [GAACATCATGAGCATCGAATGCATGCATGATAAAAACACACAAAACTACAGAATATATATTAAAAAAAAACACAAAAACAAAACAAAAAACAATTTACAAAACTATACAGAAACTAACTTAAGTGAGCAAAAAGAAAAAGAAAAAAAAAGAAAGGAAACGGGAATCTCCCGAAAATATGTCGAATGTTATAACAAAAAGAAACAAACAGAGGAAGGGGAGATAACAAAGTGTAGGAAACTGTACTTCCTCTAAGGAAACTTTATATATATATGTATGTGTAGGACAGCAGCAAATCCGTCGCAAATCCGAGCTGTAGTTAAGCGAAGGAGGGGGGGGGGGGGTACTGGGGAGCGGAACAAACACATGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGGTCGGAAATGGAGGAATGGCTTAAGAGTAAGTGTTGTTTCTGTACCGAAAGAATCACGCAAAGCTGGATCAATATAGTGTGTGTGTCAGTACGATCGATACGGTTGCAGTGCTCGAGGTGGTTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX609384             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTGTGTCAGTACGATCGATTCGGTTGCAGTGCTCGAGGTGGTTGGGGTTGTAATCGCCGGGTTGTTAAGAAACAGTGTGATGATGCTTTTAAAAAGAAGAAGAAACCGCTTGACCGCCGTACACAGTGAACGGTCACACCGTCAAACTAGATACACACTAAAACACACACACATTGTACATTGTTTCTCTACTGCTGTATATCTTCTGTTTTGTGTTTTCTTCACTTCGTTTTATCGATCTTAAGAAGAAGCTGTAACTGTTAAGTTTTTGGTGGTAATATTGGCAGAGTATATATATATACATGTATTAATATAGTGTAACAAAAAAAAAACAAACCAGAGATGTAGAAATCATGTGAAGATGAAATATATATATATATATATACATATAGTTGTTAAGAAAAGGGTCTACGTGAACATGATACAAAACATATGCAAACCGGCGGAGGGTCATCAGTGAAAAGCGAGAAGTCATTCCTTCTTCTTTTGTGCACTATTCTCAACCTGGCTAGGAAAAGGAAAGGCGATAGAAGAAGAAGTTTTGGCTTCCATGGTTTAATTTATCGTTTCGAAGCCCGAAAGGGAAAGGGAAGAGAACAACA]




>consensus_3676#0
GAACATCATGAGCATCGAATGCATGCATGATAAAAACACACAAAACTACAGAATATATAT
TAAAAAAAAACACAAAAACAAAACAAAAAACAATTTACAAAACTATACAGAAACTAACTT
AAGTGAGCAAAAAGAAAAAGAAAAAAAAAGAAAGGAAACGGGAATCTCCCGAAAATATGT
CGAATGTTATAACAAAAAGAAACAAACAGAGGAAGGGGAGATAACAAAGTGTAGGAAACT
GTACTTCCTCTAAGGAAACTTTATATATATATGTATGTGTAGGACAGCAGCAAATCCGTC
GCAAATCCGAGCTGTAGTTAAGCGAAGGAGGGGGGGGGGGGGTACTGGGGAGCGGAACAA
ACACATGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGG
GTCGGAAATGGAGGAATGGCTTAAGAGTAAGTGTTGTTTCTGTACCGAAAGAATCACGCA
AAGCTGGATCAATATAGTGTGTGTGTCAGTACGATCGATACGGTTGCAGTGCTCGAGGTG
GTTGGGGTTGTAATCGCCGGGTTGTTAAGAAACAGTGTGATGATGCTTTTAAAAAGAAGA
AGAAACCGCTTGACCGCCGTACACAGTGAACGGTCACACCGTCAAACTAGATACACACTA
AAACACACACACATTGTACATTGTTTCTCTACTGCTGTATATCTTCTGTTTTGTGTTTTC
TTCACTTCGTTTTATCGATCTTAAGAAGAAGCTGTAACTGTTAAGTTTTTGGTGGTAATA
TTGGCAGAGTATATATATATACATGTATTAATATAGTGTAACAAAAAAAAAACAAACCAG
AGATGTAGAAATCATGTGAAGATGAAATATATATATATATATATACATATAGTTGTTAAG
AAAAGGGTCTACGTGAACATGATACAAAACATATGCAAACCGGCGGAGGGTCATCAGTGA
AAAGCGAGAAGTCATTCCTTCTTCTTTTGTGCACTATTCTCAACCTGGCTAGGAAAAGGA
AAGGCGATAGAAGAAGAAGTTTTGGCTTCCATGGTTTAATTTATCGTTTCGAAGCCCGAA
AGGGAAAGGGAAGAGAACAACA

consensusID : consensus_3676#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [CAAGAATTCCCCCGAGGTTTAAAACACAAAAACAAAACAAAACAAAAAAACAATTTACAAAACTATACAGAAACTAACTTAAGTGAGCAAAACGAAGAAGAAAAAAAGAAAAGAAACGGGAATCTCCCGAAAATATGTCGAATGTTATAACAAAACGAAACAAACAGAGGGAGAGGAGAAAACAAAGTGTAGGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGGGTCGGAAAAATGGGGAGCCGCCACACTGCCGCCCTCTACACGCCACGCCTTACNNCGCCTGCTCCGCCTCTCCTCCTTGCCTACCCCCGCACACACGCACACTTCCAACCGACCAAACACGCCCTGGCACTCCACACCTACTACGGCTGCTGCTGCTGCTCACGACTAACCGCAACTCCGACCTCTCGCGCTCTGCACGCGTGCCTCGCAGCGCCTGGCTCTGCGCGAGCTTTGCGTAACCTCCGACCCCGCGCGCCTCTGCCTCTCACACGCAACAACCAAGCTGGCTGGCACCTGCACGTGCGTTTTACCACAACAGCNACACGCAAACGGAG]

[+] EMBL AL692365             [CAAGAATTCCCCCGAGGTTTAAAACACAAAAACAAAACAAAACAAAAAAACAATTTACAAAACTATACAGAAACTAACTTAAGTGAGCAAAACGAAGAAGAAAAAAAGAAAAGAAACGGGAATCTCCCGAAAATATGTCGAATGTTATAACAAAACGAAACAAACAGAGGGAGAGGAGAAAACAAAGTGTAGGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGGGTCGGAAAAATGGGGAGCCGCCACACTGCCGCCCTCTACACGCCACGCCTTACNNCGCCTGCTCCGCCTCTCCTCCTTGCCTACCCCCGCACACACGCACACTTCCAACCGACCAAACACGCCCTGGCACTCCACACCTACTACGGCTGCTGCTGCTGCTCACGACTAACCGCAACTCCGACCTCTCGCGCTCTGCACGCGTGCCTCGCAGCGCCTGGCTCTGCGCGAGCTTTGCGTAACCTCCGACCCCGCGCGCCTCTGCCTCTCACACGCAACAACCAAGCTGGCTGGCACCTGCACGTGCGTTTTACCACAACAGCNACACGCAAACGGAG]




>consensus_3676#1
CAAGAATTCCCCCGAGGTTTAAAACACAAAAACAAAACAAAACAAAAAAACAATTTACAA
AACTATACAGAAACTAACTTAAGTGAGCAAAACGAAGAAGAAAAAAAGAAAAGAAACGGG
AATCTCCCGAAAATATGTCGAATGTTATAACAAAACGAAACAAACAGAGGGAGAGGAGAA
AACAAAGTGTAGGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGG
AAAGGGGGTCGGAAAAATGGGGAGCCGCCACACTGCCGCCCTCTACACGCCACGCCTTAC
NNCGCCTGCTCCGCCTCTCCTCCTTGCCTACCCCCGCACACACGCACACTTCCAACCGAC
CAAACACGCCCTGGCACTCCACACCTACTACGGCTGCTGCTGCTGCTCACGACTAACCGC
AACTCCGACCTCTCGCGCTCTGCACGCGTGCCTCGCAGCGCCTGGCTCTGCGCGAGCTTT
GCGTAACCTCCGACCCCGCGCGCCTCTGCCTCTCACACGCAACAACCAAGCTGGCTGGCA
CCTGCACGTGCGTTTTACCACAACAGCNACACGCAAACGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3676#0      GAACATCATGAGCATCGAATGCATGCATGATAAAAACACACAAAACTACAGAATATATAT 60
consensus_3676#1      ----------------------------------------CAAGAATTCCCCCGAGGTTT 20
                                                              *** * * *     *  * *

consensus_3676#0      TAAAAAAAAACACAAAAACAAAACAAAAAACAATTTACAAAACTATACAGAAACTAACTT 120
consensus_3676#1      AAAACACAAAAACAAAACAAAACAAAAAAACAATTTACAAAACTATACAGAAACTAACTT 80
                       *** * *** ******  ***  ************************************

consensus_3676#0      AAGTGAGCAAAAAGAAAAAGAAAAAAAAAGAAAGGAAACGGGAATCTCCCGAAAATATGT 180
consensus_3676#1      AAGTGAGCAAAACGAAGAAGAAAAAAA--GAAAAGAAACGGGAATCTCCCGAAAATATGT 138
                      ************ *** **********  **** **************************

consensus_3676#0      CGAATGTTATAACAAAAAGAAACAAACAGAGGAAGGGGAGATAACAAAGTGTAGGAAACT 240
consensus_3676#1      CGAATGTTATAACAAAACGAAACAAACAGAGGGAGAGGAGAAAACAAAGTGTAGGAAACA 198
                      ***************** ************** ** ***** ***************** 

consensus_3676#0      GTACTTCCTCTAAGGAAACTTTATATATATATGTATGTGTAGGACAGCAGCAAATCCGTC 300
consensus_3676#1      TGATTACCAATT-----ACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGG---GTC 250
                        * * **  *      *****  * *  **  *    *   *** * *        ***

consensus_3676#0      GCAAATCCGAGCTGTAGTTAAGCGAAGGAGGGGGGGGGGGGGTACTGGGGAGCGGAACAA 360
consensus_3676#1      GGAAAAATGGGGAGCCGCCACACTGCCGCCCTCTACACGCCACGCCTTACNNCG--CCTG 308
                      * ***   * *  *  *  *  *    *          *     *       **   *  

consensus_3676#0      ACACATGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGG 420
consensus_3676#1      CTCCGCCTCTCCTCCTTGCCTACCCCCGCACACACGCACACTTCCAACCGACCAAACACG 368
                         *      * *  ** ** *   *     * * * ***    * *  ***  **   *

consensus_3676#0      GTCGGAAATGGAGGAATGGCTTAAGAGTAAGTGTTGTTTCTGTACCGAAAGAATCACGCA 480
consensus_3676#1      CCCTGGCACTCCACACCTACT-----ACGGCTGCTGCTGCTGCTCACGACTAACC--GCA 421
                        * *  *      *    **          ** ** * ***  *   *  ** *  ***

consensus_3676#0      AAGCTGGATCAATATAGTGTGTGTGTCAGTACGATCGATACGGTTG-CAGTGCTCGAGGT 539
consensus_3676#1      ACTCCGACCTCTCGCGCTCTGCACGC--GTGCC-TCGCAGCGCCTGGCTCTGCGCGAGCT 478
                      *  * *           * **   *   ** *  ***   **  ** *  *** **** *

consensus_3676#0      GGTTGGGGTTGTAATCGCCGGGTTGTTAAGAAACAGTGTGATGATGCTTTTAAAAAGAAG 599
consensus_3676#1      --TTG----CGTAACCTCC----------GACCCCGCGCGCCTCTGCCTCTCACACGCAA 522
                        ***     **** * **          **  * * * *    *** * * * * * * 

consensus_3676#0      AAG--AAACCGCTTGACCGCCGTACACAGTGAACGGTCACACCGTCAAACTAGATACACA 657
consensus_3676#1      CAACCAAGCTGGCTGGCACCTGCACGT-GCGTTTTACCACAAC----AGCNACACGCAAA 577
                       *   ** * *  ** *  * * **   * *      **** *    * * * *  ** *

consensus_3676#0      CTAAAACACACACACATTGTACATTGTTTCTCTACTGCTGTATATCTTCTGTTTTGTGTT 717
consensus_3676#1      CGGAG------------------------------------------------------- 582
                      *  *                                                        

consensus_3676#0      TTCTTCACTTCGTTTTATCGATCTTAAGAAGAAGCTGTAACTGTTAAGTTTTTGGTGGTA 777
consensus_3676#1      ------------------------------------------------------------
                                                                                  

consensus_3676#0      ATATTGGCAGAGTATATATATATACATGTATTAATATAGTGTAACAAAAAAAAAACAAAC 837
consensus_3676#1      ------------------------------------------------------------
                                                                                  

consensus_3676#0      CAGAGATGTAGAAATCATGTGAAGATGAAATATATATATATATATATACATATAGTTGTT 897
consensus_3676#1      ------------------------------------------------------------
                                                                                  

consensus_3676#0      AAGAAAAGGGTCTACGTGAACATGATACAAAACATATGCAAACCGGCGGAGGGTCATCAG 957
consensus_3676#1      ------------------------------------------------------------
                                                                                  

consensus_3676#0      TGAAAAGCGAGAAGTCATTCCTTCTTCTTTTGTGCACTATTCTCAACCTGGCTAGGAAAA 1017
consensus_3676#1      ------------------------------------------------------------
                                                                                  

consensus_3676#0      GGAAAGGCGATAGAAGAAGAAGTTTTGGCTTCCATGGTTTAATTTATCGTTTCGAAGCCC 1077
consensus_3676#1      ------------------------------------------------------------
                                                                                  

consensus_3676#0      GAAAGGGAAAGGGAAGAGAACAACA 1102
consensus_3676#1      -------------------------