These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1102 fasta sequence [GAACATCATGAGCATCGAATGCATGCATGATAAAAACACACAAAACTACAGAATATATATTAAAAAAAAACACAAAAACAAAACAAAAAACAATTTACAAAACTATACAGAAACTAACTTAAGTGAGCAAAAAGAAAAAGAAAAAAAAAGAAAGGAAACGGGAATCTCCCGAAAATATGTCGAATGTTATAACAAAAAGAAACAAACAGAGGAAGGGGAGATAACAAAGTGTAGGAAACTGTACTTCCTCTAAGGAAACTTTATATATATATGTATGTGTAGGACAGCAGCAAATCCGTCGCAAATCCGAGCTGTAGTTAAGCGAAGGAGGGGGGGGGGGGGTACTGGGGAGCGGAACAAACACATGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGGTCGGAAATGGAGGAATGGCTTAAGAGTAAGTGTTGTTTCTGTACCGAAAGAATCACGCAAAGCTGGATCAATATAGTGTGTGTGTCAGTACGATCGATACGGTTGCAGTGCTCGAGGTGGTTGGGGTTGTAATCGCCGGGTTGTTAAGAAACAGTGTGATGATGCTTTTAAAAAGAAGAAGAAACCGCTTGACCGCCGTACACAGTGAACGGTCACACCGTCAAACTAGATACACACTAAAACACACACACATTGTACATTGTTTCTCTACTGCTGTATATCTTCTGTTTTGTGTTTTCTTCACTTCGTTTTATCGATCTTAAGAAGAAGCTGTAACTGTTAAGTTTTTGGTGGTAATATTGGCAGAGTATATATATATACATGTATTAATATAGTGTAACAAAAAAAAAACAAACCAGAGATGTAGAAATCATGTGAAGATGAAATATATATATATATATATACATATAGTTGTTAAGAAAAGGGTCTACGTGAACATGATACAAAACATATGCAAACCGGCGGAGGGTCATCAGTGAAAAGCGAGAAGTCATTCCTTCTTCTTTTGTGCACTATTCTCAACCTGGCTAGGAAAAGGAAAGGCGATAGAAGAAGAAGTTTTGGCTTCCATGGTTTAATTTATCGTTTCGAAGCCCGAAAGGGAAAGGGAAGAGAACAACA] [+] EMBL BX627270 [GAACATCATGAGCATCGAATGCATGCATGATAAAAACACACAAAACTACAGAATATATATTAAAAAAAAACACAAAAACAAAACAAAAAACAATTTACAAAACTATACAGAAACTAACTTAAGTGAGCAAAAAGAAAAAGAAAAAAAAAGAAAGGAAACGGGAATCTCCCGAAAATATGTCGAATGTTATAACAAAAAGAAACAAACAGAGGAAGGGGAGATAACAAAGTGTAGGAAACTGTACTTCCTCTAAGGAAACTTTATATATATATGTATGTGTAGGACAGCAGCAAATCCGTCGCAAATCCGAGCTGTAGTTAAGCGAAGGAGGGGGGGGGGGGGTACTGGGGAGCGGAACAAACACATGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGGTCGGAAATGGAGGAATGGCTTAAGAGTAAGTGTTGTTTCTGTACCGAAAGAATCACGCAAAGCTGGATCAATATAGTGTGTGTGTCAGTACGATCGATACGGTTGCAGTGCTCGAGGTGGTTGGG ] [+] EMBL BX609384 [ GTGTGTCAGTACGATCGATTCGGTTGCAGTGCTCGAGGTGGTTGGGGTTGTAATCGCCGGGTTGTTAAGAAACAGTGTGATGATGCTTTTAAAAAGAAGAAGAAACCGCTTGACCGCCGTACACAGTGAACGGTCACACCGTCAAACTAGATACACACTAAAACACACACACATTGTACATTGTTTCTCTACTGCTGTATATCTTCTGTTTTGTGTTTTCTTCACTTCGTTTTATCGATCTTAAGAAGAAGCTGTAACTGTTAAGTTTTTGGTGGTAATATTGGCAGAGTATATATATATACATGTATTAATATAGTGTAACAAAAAAAAAACAAACCAGAGATGTAGAAATCATGTGAAGATGAAATATATATATATATATATACATATAGTTGTTAAGAAAAGGGTCTACGTGAACATGATACAAAACATATGCAAACCGGCGGAGGGTCATCAGTGAAAAGCGAGAAGTCATTCCTTCTTCTTTTGTGCACTATTCTCAACCTGGCTAGGAAAAGGAAAGGCGATAGAAGAAGAAGTTTTGGCTTCCATGGTTTAATTTATCGTTTCGAAGCCCGAAAGGGAAAGGGAAGAGAACAACA] consensusID : consensus_3676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [CAAGAATTCCCCCGAGGTTTAAAACACAAAAACAAAACAAAACAAAAAAACAATTTACAAAACTATACAGAAACTAACTTAAGTGAGCAAAACGAAGAAGAAAAAAAGAAAAGAAACGGGAATCTCCCGAAAATATGTCGAATGTTATAACAAAACGAAACAAACAGAGGGAGAGGAGAAAACAAAGTGTAGGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGGGTCGGAAAAATGGGGAGCCGCCACACTGCCGCCCTCTACACGCCACGCCTTACNNCGCCTGCTCCGCCTCTCCTCCTTGCCTACCCCCGCACACACGCACACTTCCAACCGACCAAACACGCCCTGGCACTCCACACCTACTACGGCTGCTGCTGCTGCTCACGACTAACCGCAACTCCGACCTCTCGCGCTCTGCACGCGTGCCTCGCAGCGCCTGGCTCTGCGCGAGCTTTGCGTAACCTCCGACCCCGCGCGCCTCTGCCTCTCACACGCAACAACCAAGCTGGCTGGCACCTGCACGTGCGTTTTACCACAACAGCNACACGCAAACGGAG] [+] EMBL AL692365 [CAAGAATTCCCCCGAGGTTTAAAACACAAAAACAAAACAAAACAAAAAAACAATTTACAAAACTATACAGAAACTAACTTAAGTGAGCAAAACGAAGAAGAAAAAAAGAAAAGAAACGGGAATCTCCCGAAAATATGTCGAATGTTATAACAAAACGAAACAAACAGAGGGAGAGGAGAAAACAAAGTGTAGGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGGGTCGGAAAAATGGGGAGCCGCCACACTGCCGCCCTCTACACGCCACGCCTTACNNCGCCTGCTCCGCCTCTCCTCCTTGCCTACCCCCGCACACACGCACACTTCCAACCGACCAAACACGCCCTGGCACTCCACACCTACTACGGCTGCTGCTGCTGCTCACGACTAACCGCAACTCCGACCTCTCGCGCTCTGCACGCGTGCCTCGCAGCGCCTGGCTCTGCGCGAGCTTTGCGTAACCTCCGACCCCGCGCGCCTCTGCCTCTCACACGCAACAACCAAGCTGGCTGGCACCTGCACGTGCGTTTTACCACAACAGCNACACGCAAACGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3676#0 GAACATCATGAGCATCGAATGCATGCATGATAAAAACACACAAAACTACAGAATATATAT 60 consensus_3676#1 ----------------------------------------CAAGAATTCCCCCGAGGTTT 20 *** * * * * * * consensus_3676#0 TAAAAAAAAACACAAAAACAAAACAAAAAACAATTTACAAAACTATACAGAAACTAACTT 120 consensus_3676#1 AAAACACAAAAACAAAACAAAACAAAAAAACAATTTACAAAACTATACAGAAACTAACTT 80 *** * *** ****** *** ************************************ consensus_3676#0 AAGTGAGCAAAAAGAAAAAGAAAAAAAAAGAAAGGAAACGGGAATCTCCCGAAAATATGT 180 consensus_3676#1 AAGTGAGCAAAACGAAGAAGAAAAAAA--GAAAAGAAACGGGAATCTCCCGAAAATATGT 138 ************ *** ********** **** ************************** consensus_3676#0 CGAATGTTATAACAAAAAGAAACAAACAGAGGAAGGGGAGATAACAAAGTGTAGGAAACT 240 consensus_3676#1 CGAATGTTATAACAAAACGAAACAAACAGAGGGAGAGGAGAAAACAAAGTGTAGGAAACA 198 ***************** ************** ** ***** ***************** consensus_3676#0 GTACTTCCTCTAAGGAAACTTTATATATATATGTATGTGTAGGACAGCAGCAAATCCGTC 300 consensus_3676#1 TGATTACCAATT-----ACTTTCAAAAAGTACATCATCGATAGACGGAAAGGGG---GTC 250 * * ** * ***** * * ** * * *** * * *** consensus_3676#0 GCAAATCCGAGCTGTAGTTAAGCGAAGGAGGGGGGGGGGGGGTACTGGGGAGCGGAACAA 360 consensus_3676#1 GGAAAAATGGGGAGCCGCCACACTGCCGCCCTCTACACGCCACGCCTTACNNCG--CCTG 308 * *** * * * * * * * * * ** * consensus_3676#0 ACACATGAAACATGATTACCAATTACTTTCAAAAAGTACATCATCGATAGACGGAAAGGG 420 consensus_3676#1 CTCCGCCTCTCCTCCTTGCCTACCCCCGCACACACGCACACTTCCAACCGACCAAACACG 368 * * * ** ** * * * * * *** * * *** ** * consensus_3676#0 GTCGGAAATGGAGGAATGGCTTAAGAGTAAGTGTTGTTTCTGTACCGAAAGAATCACGCA 480 consensus_3676#1 CCCTGGCACTCCACACCTACT-----ACGGCTGCTGCTGCTGCTCACGACTAACC--GCA 421 * * * * ** ** ** * *** * * ** * *** consensus_3676#0 AAGCTGGATCAATATAGTGTGTGTGTCAGTACGATCGATACGGTTG-CAGTGCTCGAGGT 539 consensus_3676#1 ACTCCGACCTCTCGCGCTCTGCACGC--GTGCC-TCGCAGCGCCTGGCTCTGCGCGAGCT 478 * * * * ** * ** * *** ** ** * *** **** * consensus_3676#0 GGTTGGGGTTGTAATCGCCGGGTTGTTAAGAAACAGTGTGATGATGCTTTTAAAAAGAAG 599 consensus_3676#1 --TTG----CGTAACCTCC----------GACCCCGCGCGCCTCTGCCTCTCACACGCAA 522 *** **** * ** ** * * * * *** * * * * * * consensus_3676#0 AAG--AAACCGCTTGACCGCCGTACACAGTGAACGGTCACACCGTCAAACTAGATACACA 657 consensus_3676#1 CAACCAAGCTGGCTGGCACCTGCACGT-GCGTTTTACCACAAC----AGCNACACGCAAA 577 * ** * * ** * * * ** * * **** * * * * * ** * consensus_3676#0 CTAAAACACACACACATTGTACATTGTTTCTCTACTGCTGTATATCTTCTGTTTTGTGTT 717 consensus_3676#1 CGGAG------------------------------------------------------- 582 * * consensus_3676#0 TTCTTCACTTCGTTTTATCGATCTTAAGAAGAAGCTGTAACTGTTAAGTTTTTGGTGGTA 777 consensus_3676#1 ------------------------------------------------------------ consensus_3676#0 ATATTGGCAGAGTATATATATATACATGTATTAATATAGTGTAACAAAAAAAAAACAAAC 837 consensus_3676#1 ------------------------------------------------------------ consensus_3676#0 CAGAGATGTAGAAATCATGTGAAGATGAAATATATATATATATATATACATATAGTTGTT 897 consensus_3676#1 ------------------------------------------------------------ consensus_3676#0 AAGAAAAGGGTCTACGTGAACATGATACAAAACATATGCAAACCGGCGGAGGGTCATCAG 957 consensus_3676#1 ------------------------------------------------------------ consensus_3676#0 TGAAAAGCGAGAAGTCATTCCTTCTTCTTTTGTGCACTATTCTCAACCTGGCTAGGAAAA 1017 consensus_3676#1 ------------------------------------------------------------ consensus_3676#0 GGAAAGGCGATAGAAGAAGAAGTTTTGGCTTCCATGGTTTAATTTATCGTTTCGAAGCCC 1077 consensus_3676#1 ------------------------------------------------------------ consensus_3676#0 GAAAGGGAAAGGGAAGAGAACAACA 1102 consensus_3676#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||