cluster # 3677

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Anopheles gambiae
cluster # 3677 cluster # 3677 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3677#0 length = 888 sequences # 2

consensus_3677#1 length = 592 sequences # 1

consensusID : consensus_3677#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 888
fasta sequence

                              [CCGCGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGTAAATTACACACTCACACACACAGGACGACGACCGCACAATCTCTGTTTCTCTGTGGTGTACAGGCATTTTACCCCGTTTTACCCGCACACAAATTAAGACGATGCTCAGCTGAAGTGTATCCTCGGTGAAGACGCAGCAGAAAGCACCAGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAACGGAGGATCCACCACCGGAAGCACTGCTGGTGGCGGTGGCGCTGCCGGTGGTGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCATCCGGGAGTTTCTGCTCGTGAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGCAAGGTGACGTTCCACGATCCGAACGTGCTGAGCGAGTTCACGCTAGTCATCAGTCCGAACGAAGGGTTTTGGTGCGGGGGTCGCTTCAAGTTTAGCATTCTCGTGCCGGAAGAGTACAACATGGCGCCACCGAAGGTGAAGTGTCTTACCAAGCTGTGGCACCCGAACATATCCGTCGAGGGAGACATCTGCCTTTCGCTGCTCCGGTTGAACTCGATCGACGGGCTCGGATGGGCACCGACCCGCCGGCTCAAGGATGTCATCTGGGGT]

[+] EMBL BM632064             [CCGCGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGTAAATTACACACTCACACACACAGGACGACGACCGCACAATCTCTGTTTCTCTGTGGTGTACAGGCATTTTACCCCGTTTTACCCGCACACAAATTAAGACGATGCTCAGCTGAAGTGTATCCTCGGTGAAGACGCAGCAGAAAGCACCAGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAACGGAGGATCCACCACCGGAAGCACTGCTGGTGGCGGTGGCGCTGCCGGTGGTGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCATCCGGGAGTTTCTGCTCGTGAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGCAAGGTGACGTTCCACGATCCGAACGTGCTGAGCGAGTTCACGCTAG                                                                                                                                                                                                                                ]
[+] EMBL BM641237             [                                                                                                                                                                                        ccgCAGAGTTCGCGGACGGACGGAAGACGGAGCAGTGCA  GCGCTGTGTTTTGAATTGATTCTGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGTGGAAACGGAGGATCCACCACCGGAAGCACTGCTGGTAGCGGTGGCGCTGCCGGTGGTGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCATCCGGGAGTTTCTGCTCGTGAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGCAAGGTGACGTTCCACGATCCGAACGTGCTGAGCGAGTTCACGCTAGTCATCAGTCCGAACGAAGGGTTTTGGTGCGGGGGTCGCTTCAAGTTTAGCATTCTCGTGCCGGAAGAGTACAACATGGCGCCACCGAAGGTGAAGTGTCTTACCAAGCTGTGGCACCCGAACATATCCGTCGAGGGAGACATCTGCCTTTCGCTGCTCCGGTTGAACTCGATCGACGGGCTCGGATGGGCACCGACCCGCCGGCTCAAGGATGTCATCTGGGGT]




>consensus_3677#0
CCGCGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGTAAATTACACACTCACACACA
CAGGACGACGACCGCACAATCTCTGTTTCTCTGTGGTGTACAGGCATTTTACCCCGTTTT
ACCCGCACACAAATTAAGACGATGCTCAGCTGAAGTGTATCCTCGGTGAAGACGCAGCAG
AAAGCACCAGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAA
TTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTC
ATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTAT
CTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTA
GCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAACGGAGGATCC
ACCACCGGAAGCACTGCTGGTGGCGGTGGCGCTGCCGGTGGTGGTCCGCTGTCCGATGCG
CCGAAGCGGATATCCATCCGGGAGTTTCTGCTCGTGAAGGAGGTGCAGGAGCTGGAACAG
AACCTGCCGATCACCTGCAAGGTGACGTTCCACGATCCGAACGTGCTGAGCGAGTTCACG
CTAGTCATCAGTCCGAACGAAGGGTTTTGGTGCGGGGGTCGCTTCAAGTTTAGCATTCTC
GTGCCGGAAGAGTACAACATGGCGCCACCGAAGGTGAAGTGTCTTACCAAGCTGTGGCAC
CCGAACATATCCGTCGAGGGAGACATCTGCCTTTCGCTGCTCCGGTTGAACTCGATCGAC
GGGCTCGGATGGGCACCGACCCGCCGGCTCAAGGATGTCATCTGGGGT

consensusID : consensus_3677#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [CCGCCCTTCGAACGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGCATTTTACCCCGTTTAACCCGCAAACACATTAAGATGATGCTCAGCTGAAGTGTATCCTCCGTGAAGACGCAGCAGAAAGAACCCGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGTGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTACTCCCCACAGGCAAGCACAACACGCAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAAACGGAGGATCCACCACCGGAAGCACTGCTTGGGTGGCGGTGGCGCTGCCGGTGGTGGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCCATCCGGGAGTTTCTGCTCGTGAAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGGCAAGGTGACGTTCCACGAATCCGA]

[+] EMBL BM609787             [CCGCCCTTCGAACGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGCATTTTACCCCGTTTAACCCGCAAACACATTAAGATGATGCTCAGCTGAAGTGTATCCTCCGTGAAGACGCAGCAGAAAGAACCCGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGTGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTACTCCCCACAGGCAAGCACAACACGCAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAAACGGAGGATCCACCACCGGAAGCACTGCTTGGGTGGCGGTGGCGCTGCCGGTGGTGGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCCATCCGGGAGTTTCTGCTCGTGAAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGGCAAGGTGACGTTCCACGAATCCGA]




>consensus_3677#1
CCGCCCTTCGAACGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGCATTTTACCCCG
TTTAACCCGCAAACACATTAAGATGATGCTCAGCTGAAGTGTATCCTCCGTGAAGACGCA
GCAGAAAGAACCCGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTT
TGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGTGCACGGATGTG
ACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGC
TTATCTACTCCCCACAGGCAAGCACAACACGCAAACACAGAAACACTTGACCATGATCAC
GCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAAACGGAG
GATCCACCACCGGAAGCACTGCTTGGGTGGCGGTGGCGCTGCCGGTGGTGGGTCCGCTGT
CCGATGCGCCGAAGCGGATATCCCATCCGGGAGTTTCTGCTCGTGAAAGGAGGTGCAGGA
GCTGGAACAGAACCTGCCGATCACCTGGCAAGGTGACGTTCCACGAATCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3677#0      CCGCGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGTAAATTACACACTCACACACA 60
consensus_3677#1      --------------------------------------------------CCGCCCTTCG 10
                                                                        *   *   * 

consensus_3677#0      CAGGACGACGACCGCACAATCTCTGTTTCTCTGTGGTGTACAGGCATTTTACCCCGTTTT 120
consensus_3677#1      AACGTAAAGAAACCCAAAGTCTGGAAATATTTACAACG------CATTTTACCCCGTTTA 64
                       * *   *  * * ** * ***     * * *     *      *************** 

consensus_3677#0      ACCCGCACACAAATTAAGACGATGCTCAGCTGAAGTGTATCCTCGGTGAAGACGCAGCAG 180
consensus_3677#1      ACCCGCAAACACATTAAGATGATGCTCAGCTGAAGTGTATCCTCCGTGAAGACGCAGCAG 124
                      ******* *** ******* ************************ ***************

consensus_3677#0      AAAGCACCAGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAA 240
consensus_3677#1      AAAGAACCCGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAA 184
                      **** *** ***************************************************

consensus_3677#0      TTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTC 300
consensus_3677#1      TTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGTGCACGGATGTGACTC 244
                      ******************************************** ***************

consensus_3677#0      ATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTAT 360
consensus_3677#1      ATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTAT 304
                      ************************************************************

consensus_3677#0      CTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTA 420
consensus_3677#1      CTACTCCCCACAGGCAAGCACAACACGCAAACACAGAAACACTTGACCATGATCACGCTA 364
                      ***  ** ****************** *********************************

consensus_3677#0      GCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAA-CGGAGGATC 479
consensus_3677#1      GCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAAACGGAGGATC 424
                      ************************************************** *********

consensus_3677#0      CACCACCGGAAGCACTGCT--GGTGGCGGTGGCGCTGCCGGTGGTGG-TCCGCTGTCCGA 536
consensus_3677#1      CACCACCGGAAGCACTGCTTGGGTGGCGGTGGCGCTGCCGGTGGTGGGTCCGCTGTCCGA 484
                      *******************  ************************** ************

consensus_3677#0      TGCGCCGAAGCGGATATCC-ATCCGGGAGTTTCTGCTCGTGAA-GGAGGTGCAGGAGCTG 594
consensus_3677#1      TGCGCCGAAGCGGATATCCCATCCGGGAGTTTCTGCTCGTGAAAGGAGGTGCAGGAGCTG 544
                      ******************* *********************** ****************

consensus_3677#0      GAACAGAACCTGCCGATCACCTG-CAAGGTGACGTTCCACGA-TCCGAACGTGCTGAGCG 652
consensus_3677#1      GAACAGAACCTGCCGATCACCTGGCAAGGTGACGTTCCACGAATCCGA------------ 592
                      *********************** ****************** *****            

consensus_3677#0      AGTTCACGCTAGTCATCAGTCCGAACGAAGGGTTTTGGTGCGGGGGTCGCTTCAAGTTTA 712
consensus_3677#1      ------------------------------------------------------------
                                                                                  

consensus_3677#0      GCATTCTCGTGCCGGAAGAGTACAACATGGCGCCACCGAAGGTGAAGTGTCTTACCAAGC 772
consensus_3677#1      ------------------------------------------------------------
                                                                                  

consensus_3677#0      TGTGGCACCCGAACATATCCGTCGAGGGAGACATCTGCCTTTCGCTGCTCCGGTTGAACT 832
consensus_3677#1      ------------------------------------------------------------
                                                                                  

consensus_3677#0      CGATCGACGGGCTCGGATGGGCACCGACCCGCCGGCTCAAGGATGTCATCTGGGGT 888
consensus_3677#1      --------------------------------------------------------