These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 888 fasta sequence [CCGCGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGTAAATTACACACTCACACACACAGGACGACGACCGCACAATCTCTGTTTCTCTGTGGTGTACAGGCATTTTACCCCGTTTTACCCGCACACAAATTAAGACGATGCTCAGCTGAAGTGTATCCTCGGTGAAGACGCAGCAGAAAGCACCAGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAACGGAGGATCCACCACCGGAAGCACTGCTGGTGGCGGTGGCGCTGCCGGTGGTGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCATCCGGGAGTTTCTGCTCGTGAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGCAAGGTGACGTTCCACGATCCGAACGTGCTGAGCGAGTTCACGCTAGTCATCAGTCCGAACGAAGGGTTTTGGTGCGGGGGTCGCTTCAAGTTTAGCATTCTCGTGCCGGAAGAGTACAACATGGCGCCACCGAAGGTGAAGTGTCTTACCAAGCTGTGGCACCCGAACATATCCGTCGAGGGAGACATCTGCCTTTCGCTGCTCCGGTTGAACTCGATCGACGGGCTCGGATGGGCACCGACCCGCCGGCTCAAGGATGTCATCTGGGGT] [+] EMBL BM632064 [CCGCGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGTAAATTACACACTCACACACACAGGACGACGACCGCACAATCTCTGTTTCTCTGTGGTGTACAGGCATTTTACCCCGTTTTACCCGCACACAAATTAAGACGATGCTCAGCTGAAGTGTATCCTCGGTGAAGACGCAGCAGAAAGCACCAGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAACGGAGGATCCACCACCGGAAGCACTGCTGGTGGCGGTGGCGCTGCCGGTGGTGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCATCCGGGAGTTTCTGCTCGTGAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGCAAGGTGACGTTCCACGATCCGAACGTGCTGAGCGAGTTCACGCTAG ] [+] EMBL BM641237 [ ccgCAGAGTTCGCGGACGGACGGAAGACGGAGCAGTGCA GCGCTGTGTTTTGAATTGATTCTGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGTGGAAACGGAGGATCCACCACCGGAAGCACTGCTGGTAGCGGTGGCGCTGCCGGTGGTGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCATCCGGGAGTTTCTGCTCGTGAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGCAAGGTGACGTTCCACGATCCGAACGTGCTGAGCGAGTTCACGCTAGTCATCAGTCCGAACGAAGGGTTTTGGTGCGGGGGTCGCTTCAAGTTTAGCATTCTCGTGCCGGAAGAGTACAACATGGCGCCACCGAAGGTGAAGTGTCTTACCAAGCTGTGGCACCCGAACATATCCGTCGAGGGAGACATCTGCCTTTCGCTGCTCCGGTTGAACTCGATCGACGGGCTCGGATGGGCACCGACCCGCCGGCTCAAGGATGTCATCTGGGGT] consensusID : consensus_3677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [CCGCCCTTCGAACGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGCATTTTACCCCGTTTAACCCGCAAACACATTAAGATGATGCTCAGCTGAAGTGTATCCTCCGTGAAGACGCAGCAGAAAGAACCCGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGTGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTACTCCCCACAGGCAAGCACAACACGCAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAAACGGAGGATCCACCACCGGAAGCACTGCTTGGGTGGCGGTGGCGCTGCCGGTGGTGGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCCATCCGGGAGTTTCTGCTCGTGAAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGGCAAGGTGACGTTCCACGAATCCGA] [+] EMBL BM609787 [CCGCCCTTCGAACGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGCATTTTACCCCGTTTAACCCGCAAACACATTAAGATGATGCTCAGCTGAAGTGTATCCTCCGTGAAGACGCAGCAGAAAGAACCCGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAATTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGTGCACGGATGTGACTCATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTATCTACTCCCCACAGGCAAGCACAACACGCAAACACAGAAACACTTGACCATGATCACGCTAGCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAAACGGAGGATCCACCACCGGAAGCACTGCTTGGGTGGCGGTGGCGCTGCCGGTGGTGGGTCCGCTGTCCGATGCGCCGAAGCGGATATCCCATCCGGGAGTTTCTGCTCGTGAAAGGAGGTGCAGGAGCTGGAACAGAACCTGCCGATCACCTGGCAAGGTGACGTTCCACGAATCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3677#0 CCGCGTAAAGAAACCCAAAGTCTGGAAATATTTACAACGTAAATTACACACTCACACACA 60 consensus_3677#1 --------------------------------------------------CCGCCCTTCG 10 * * * consensus_3677#0 CAGGACGACGACCGCACAATCTCTGTTTCTCTGTGGTGTACAGGCATTTTACCCCGTTTT 120 consensus_3677#1 AACGTAAAGAAACCCAAAGTCTGGAAATATTTACAACG------CATTTTACCCCGTTTA 64 * * * * * ** * *** * * * * *************** consensus_3677#0 ACCCGCACACAAATTAAGACGATGCTCAGCTGAAGTGTATCCTCGGTGAAGACGCAGCAG 180 consensus_3677#1 ACCCGCAAACACATTAAGATGATGCTCAGCTGAAGTGTATCCTCCGTGAAGACGCAGCAG 124 ******* *** ******* ************************ *************** consensus_3677#0 AAAGCACCAGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAA 240 consensus_3677#1 AAAGAACCCGAGTTCGAGGACGGACGGAAGACGGAGCAGTGCAGCGCGCAGTGTTTTGAA 184 **** *** *************************************************** consensus_3677#0 TTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGCGCACGGATGTGACTC 300 consensus_3677#1 TTGATTCCGTGCAATACATTCGTCTTGTCTTTAAGCTTACCCCGTGCACGGATGTGACTC 244 ******************************************** *************** consensus_3677#0 ATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTAT 360 consensus_3677#1 ATCGTGTTCCGGTTGGCGAACTGCTCCCCGATCAAGAAGCAAAGAAGGCTGTCTGCTTAT 304 ************************************************************ consensus_3677#0 CTAGCCCGCACAGGCAAGCACAACACACAAACACAGAAACACTTGACCATGATCACGCTA 420 consensus_3677#1 CTACTCCCCACAGGCAAGCACAACACGCAAACACAGAAACACTTGACCATGATCACGCTA 364 *** ** ****************** ********************************* consensus_3677#0 GCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAA-CGGAGGATC 479 consensus_3677#1 GCCCGCAAGAAGAAAGAGTCGGGCAGTGGCGGCGGTGGAGGTGGCGGAAAACGGAGGATC 424 ************************************************** ********* consensus_3677#0 CACCACCGGAAGCACTGCT--GGTGGCGGTGGCGCTGCCGGTGGTGG-TCCGCTGTCCGA 536 consensus_3677#1 CACCACCGGAAGCACTGCTTGGGTGGCGGTGGCGCTGCCGGTGGTGGGTCCGCTGTCCGA 484 ******************* ************************** ************ consensus_3677#0 TGCGCCGAAGCGGATATCC-ATCCGGGAGTTTCTGCTCGTGAA-GGAGGTGCAGGAGCTG 594 consensus_3677#1 TGCGCCGAAGCGGATATCCCATCCGGGAGTTTCTGCTCGTGAAAGGAGGTGCAGGAGCTG 544 ******************* *********************** **************** consensus_3677#0 GAACAGAACCTGCCGATCACCTG-CAAGGTGACGTTCCACGA-TCCGAACGTGCTGAGCG 652 consensus_3677#1 GAACAGAACCTGCCGATCACCTGGCAAGGTGACGTTCCACGAATCCGA------------ 592 *********************** ****************** ***** consensus_3677#0 AGTTCACGCTAGTCATCAGTCCGAACGAAGGGTTTTGGTGCGGGGGTCGCTTCAAGTTTA 712 consensus_3677#1 ------------------------------------------------------------ consensus_3677#0 GCATTCTCGTGCCGGAAGAGTACAACATGGCGCCACCGAAGGTGAAGTGTCTTACCAAGC 772 consensus_3677#1 ------------------------------------------------------------ consensus_3677#0 TGTGGCACCCGAACATATCCGTCGAGGGAGACATCTGCCTTTCGCTGCTCCGGTTGAACT 832 consensus_3677#1 ------------------------------------------------------------ consensus_3677#0 CGATCGACGGGCTCGGATGGGCACCGACCCGCCGGCTCAAGGATGTCATCTGGGGT 888 consensus_3677#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||