These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [CCGCCCACGCGTCCGGGACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGA-AAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGCGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAACCGTTGCAGCAGAAACGTCCACCAATGCAGCGCGGCTTCTCCGATCTGGGGGCACAGGATTAAGAAGCGCGTCACGCTGAGCTCGATACCGCCACAG] [+] EMBL BM613188 [CCGCCCACGCGTCCGGGACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGA AAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGCGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAACCGTTGCAGCAGAAACGTCCACCAATGCAGCGCGGCTTCTCCGATCTGGGGGCACAGGATTAAGAAGCGCGTCACGCTGAGCTCGATACCGCCACAG] [+] EMBL BM609600 [CCGCCCACGCGTCCGGGACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAGGAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGCGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCA ] consensusID : consensus_3679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CCGGGCGCAGCAGCTTCGTCAGCGGCATCTTCTCCTCGGCCGTGCAGCGGCGCGGCAGCGGACACGAGAGCGCCCCGCACACCACCGTCGCCCTTAACAACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGTGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAAC] [+] EMBL BM627759 [CCGGGCGCAGCAGCTTCGTCAGCGGCATCTTCTCCTCGGCCGTGCAGCGGCGCGGCAGCGGACACGAGAGCGCCCCGCACACCACCGTCGCCCTTAACAACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGTGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3679#0 ------------------------------------------------------------ consensus_3679#1 CCGGGCGCAGCAGCTTCGTCAGCGGCATCTTCTCCTCGGCCGTGCAGCGGCGCGGCAGCG 60 consensus_3679#0 ---------------------CCGCCCACGCGTCCGG-GACGAAGATGAGGAACCGAGAT 38 consensus_3679#1 GACACGAGAGCGCCCCGCACACCACCGTCGCCCTTAACAACGAAGATGAGGAACCGAGAT 120 ** ** *** ********************* consensus_3679#0 GTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATT 98 consensus_3679#1 GTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATT 180 ************************************************************ consensus_3679#0 TTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGG 158 consensus_3679#1 TTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGG 240 ************************************************************ consensus_3679#0 AGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGT 218 consensus_3679#1 AGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGT 300 ************************************************************ consensus_3679#0 TAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTA 278 consensus_3679#1 TAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTA 360 ************************************************************ consensus_3679#0 GTTTAGCTTCGCGCGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAG 338 consensus_3679#1 GTTTAGCTTCGCGTGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAG 420 ************* ********************************************** consensus_3679#0 ATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATC 398 consensus_3679#1 ATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATC 480 ************************************************************ consensus_3679#0 CTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTG 458 consensus_3679#1 CTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTG 540 ************************************************************ consensus_3679#0 CATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTA 518 consensus_3679#1 CATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTA 600 ************************************************************ consensus_3679#0 TTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGC 578 consensus_3679#1 TTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGC 660 ************************************************************ consensus_3679#0 AACCGTTGCAGCAGAAACGTCCACCAATGCAGCGCGGCTTCTCCGATCTGGGGGCACAGG 638 consensus_3679#1 AAC--------------------------------------------------------- 663 *** consensus_3679#0 ATTAAGAAGCGCGTCACGCTGAGCTCGATACCGCCACAG 677 consensus_3679#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||