cluster # 3681

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Anopheles gambiae
cluster # 3681 cluster # 3681 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3681#0 length = 773 sequences # 2

consensus_3681#1 length = 490 sequences # 1

consensusID : consensus_3681#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 773
fasta sequence

                              [CCGGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTTTCTATGGATAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGCTGGATTACGACCGGCTACCAGAGCGAACATCTTGTGTGATCAAGAATGCTGTTGAATCGAGTCGTTGGCCTGATTCTAGATACTTCCAACGAGAGTTCAAAGGGCTTCCGTGCAACGGTGCATCCTGTCAATCTAGTACGCGAGGCCCTCATCAAATTTGCTCACATGAGCCAGAAGTAGAAACTAAAAAGAAATCTAAATTTGGATGTGTGTATACCATATCGAATATACCCAAAAGTTATATTATATCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAGTATCGTGATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCATAGTTGCTGCACATCCGTCCGAAATTGTCATCATCATTTCTTTTTATAAATTAATGAATCAACACCTACGTGCCCATACGCAATAATAAATTACACGTATAAATATCTGATTTT]

[+] EMBL BM609526             [CCGGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTTTCTATGGATAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGCTGGATTACGACCGGCTACCAGAGCGAACATCTTGTGTGATCAAGAATGCTGTTGAATCGAGTCGTTGGCCTGATTCTAGATACTTCCAACGAGAGTTCAAAGGGCTTCCGTGCAACGGTGCATCCTGTCAATCTAGTACGCGAGGCCCTCATCAAATTTGCTCACATGAGCCAGAAGTAGAAACTAAAAAGAAATCTAAATTTGGATGTGTGTATACCATATCGAATATACCCAAAAGTTATATTATATCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAGTATCGTGATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCATAGTTGCTGCACATCCGT                                                                                                ]
[+] EMBL BM622412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccgGTATACCATATCGAATATACCCAAAAGTTATATTATATCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAGTATCGTGATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCATAGTTGCTGCACATCCGTCCGAAATTGTCATCATCATTTCTTTTTATAAATTAATGAATCAACACCTACGTGCCCATACGCAATAATAAATTACACGTATAAATATCTGATTTT]




>consensus_3681#0
CCGGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAAC
TCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTT
GAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAAC
CATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTG
CCGGTGTTTTCTATGGATAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGCTG
GATTACGACCGGCTACCAGAGCGAACATCTTGTGTGATCAAGAATGCTGTTGAATCGAGT
CGTTGGCCTGATTCTAGATACTTCCAACGAGAGTTCAAAGGGCTTCCGTGCAACGGTGCA
TCCTGTCAATCTAGTACGCGAGGCCCTCATCAAATTTGCTCACATGAGCCAGAAGTAGAA
ACTAAAAAGAAATCTAAATTTGGATGTGTGTATACCATATCGAATATACCCAAAAGTTAT
ATTATATCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAG
TATCGTGATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCAT
AGTTGCTGCACATCCGTCCGAAATTGTCATCATCATTTCTTTTTATAAATTAATGAATCA
ACACCTACGTGCCCATACGCAATAATAAATTACACGTATAAATATCTGATTTT

consensusID : consensus_3681#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [CCGCTGGAAAGTAATGCTGATCAGCATTTACTAGAATTTTATAATAGAGATAGAGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTTTCTATGGATGTAAGTAGAAAAAATATCGATTTAGAATCGAAAGACCGACATACACATGCCAATGAATGCTATATTAATCGGTTTGTTGAAAATCTCGCCAAATTGCAACCTGAACTTTACGCCAACCTTGACGTTAACCATCCTTGGAAGAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGC]

[+] EMBL BM611506             [CCGCTGGAAAGTAATGCTGATCAGCATTTACTAGAATTTTATAATAGAGATAGAGATTCTTGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTACCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACATATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATTGATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTTTCTATGGATGTAAGTAGAAAAAATATCGATTTAGAATCGAAAGACCGACATACACATGCCAATGAATGCTATATTAATCGGTTTGTTGAAAATCTCGCCAAATTGCAACCTGAACTTTACGCCAACCTTGACGTTAACCATCCTTGGAAGAATCGTGCCGGAGAATCTCCATTGAAATCGAGCTACCAGC]




>consensus_3681#1
CCGCTGGAAAGTAATGCTGATCAGCATTTACTAGAATTTTATAATAGAGATAGAGATTCT
TGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTA
CCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACA
TATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATT
GATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTT
TCTATGGATGTAAGTAGAAAAAATATCGATTTAGAATCGAAAGACCGACATACACATGCC
AATGAATGCTATATTAATCGGTTTGTTGAAAATCTCGCCAAATTGCAACCTGAACTTTAC
GCCAACCTTGACGTTAACCATCCTTGGAAGAATCGTGCCGGAGAATCTCCATTGAAATCG
AGCTACCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3681#0      ---------------------------------------------------CCGGATTCT 9
consensus_3681#1      CCGCTGGAAAGTAATGCTGATCAGCATTTACTAGAATTTTATAATAGAGATAGAGATTCT 60
                                                                            ******

consensus_3681#0      TGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTA 69
consensus_3681#1      TGTAGCAATCTACGATTCAATCCAGTTTTCATTAAACATAAATTCTTCAACTCGAAATTA 120
                      ************************************************************

consensus_3681#0      CCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACA 129
consensus_3681#1      CCGTAACATAAATCCTTAACACCGTAAGTGTTTACGATGGATCGAAAATTTGAAACAACA 180
                      ************************************************************

consensus_3681#0      TATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATT 189
consensus_3681#1      TATAGCCAAGACTACACTCACCGATTAGAAAATCGACAATTAGCATTGAACCATAAGATT 240
                      ************************************************************

consensus_3681#0      GATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTT 249
consensus_3681#1      GATGCAAACCTTCTGGGCAGTTGCTTTTCACCACCTGTCGAATGCACGGTGCCGGTGTTT 300
                      ************************************************************

consensus_3681#0      TCTATGGATAATCGTGCCGGAGAATCTCCATTGA-AATCGAGCTACCAGC-TGGAT-TAC 306
consensus_3681#1      TCTATGGATGTAAGTAG-AAAAAATATCGATTTAGAATCGAAAGACCGACATACACATGC 359
                      *********    **     * *** ** *** * ******   ***  * *  *  * *

consensus_3681#0      GACCGGCTACCAGAGCGAACATCTTGTGTGATCAAGAATGCTGTTGAATCGAGTCGTTGG 366
consensus_3681#1      CAATGAATGCTATATTAATCGGTTTG-----TTGAAAATCTCGCCAAATTGCAACCTGAA 414
                       *  *  * * * *   * *   ***     *  * ***   *   *** *   * *   

consensus_3681#0      CCTGATTCTAGATACTTCCAACGAGAGTTCAAAGGGCTTCCGTGCAACGGTGCATCCTGT 426
consensus_3681#1      CTTTACGCCA-ACCTTGACGTTAACCATCCTTGGAAGAATCGTGCCGGAGAATCTCCATT 473
                      * * *  * * *   *  *    *   * *   *      *****    *    ***  *

consensus_3681#0      CAATCTAGTACGCGAGGCCCTCATCAAATTTGCTCACATGAGCCAGAAGTAGAAACTAAA 486
consensus_3681#1      GAAATCGAGCTACCAGC------------------------------------------- 490
                       **         * **                                            

consensus_3681#0      AAGAAATCTAAATTTGGATGTGTGTATACCATATCGAATATACCCAAAAGTTATATTATA 546
consensus_3681#1      ------------------------------------------------------------
                                                                                  

consensus_3681#0      TCAAGTCATTGGCCTGATCAAGATTGGCAACGTAGTACACCAAATATGACGGAGTATCGT 606
consensus_3681#1      ------------------------------------------------------------
                                                                                  

consensus_3681#0      GATAAGGTGGGACGACTTGGAAGAACTTTGCAACGTGAAAACATTCACGATCATAGTTGC 666
consensus_3681#1      ------------------------------------------------------------
                                                                                  

consensus_3681#0      TGCACATCCGTCCGAAATTGTCATCATCATTTCTTTTTATAAATTAATGAATCAACACCT 726
consensus_3681#1      ------------------------------------------------------------
                                                                                  

consensus_3681#0      ACGTGCCCATACGCAATAATAAATTACACGTATAAATATCTGATTTT 773
consensus_3681#1      -----------------------------------------------