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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence
[AATTCCCGAGGTTACATGGATGACGAAGGGTACATCATTATTGCGATTTTACCGGCGTCATGAACCATCTGCTGATGCCACCGCCCGCCAACTTTGGAATGCGTTCGCCAACCATCGTCACGGCGGCGACCGCAACACGTCAACGACCACGAATGGGACCAACGGTGGTGGAGGTGGGCTCATACCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTCTACACTGGCTTTACACGGTAAGAGCAACCGACCAGTCAGACATCCCAATGGGTGNACNCGGCGCTCCACTGACCCGCTACGGTGCGCGCCTGGCTCTCGCNCTTGCCTAGCTTACTAGCTTTGGAGTGATGTGTACTGTGTTCGNCATTCTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAANNCAACGAAAAGGATATCGATCCCTCCCTTCACTGTGCCAACGGNACACGCACCACACACAGTTGGNGTGCGATATTTCTTACTGCAAAGTCCCCTATTATAGAGTCACGTAAGCATAACCCCCGCCAATAGGACAANACGTGTCCGCCGCCTTACAGCATACNCACCACNGCTGCGCNCGCTAAGCGCGCCAACCTACGCTGTTGTTGACTANCCTCGCTTNATNTATTCGCGNACTACTATATTTCTCNCCATCTCACTGCCNGACTTGCCTAGCACGTATGTACGACNACATCGGCTTTATAACATGTAGAACGTTNGCCATAACAACGGAAACGTACAGAAACAAGACTGAGGC]
[+] EMBL AL692527 [AATTCCCGAGGTTACATGGATGACGAAGGGTACATCATTATTGCGATTTTACCGGCGTCATGAACCATCTGCTGATGCCACCGCCCGCCAACTTTGGAATGCGTTCGCCAACCATCGTCACGGCGGCGACCGCAACACGTCAACGACCACGAATGGGACCAACGGTGGTGGAGGTGGGCTCATACCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTCTACACTGGCTTTACACGGTAAGAGCAACCGACCAGTCAGACATCCCAATGGGTGNACNCGGCGCTCCACTGACCCGCTACGGTGCGCGCCTGGCTCTCGCNCTTGCCTAGCTTACTAGCTTTGGAGTGATGTGTACTGTGTTCGNCATTCTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAANNCAACGAAAAGGATATCGATCCCTCCCTTCACTGTGCCAACGGNACACGCACCACACACAGTTGGNGTGCGATATTTCTTACTGCAAAGTCCCCTATTATAGAGTCACGTAAGCATAACCCCCGCCAATAGGACAANACGTGTCCGCCGCCTTACAGCATACNCACCACNGCTGCGCNCGCTAAGCGCGCCAACCTACGCTGTTGTTGACTANCCTCGCTTNATNTATTCGCGNACTACTATATTTCTCNCCATCTCACTGCCNGACTTGCCTAGCACGTATGTACGACNACATCGGCTTTATAACATGTAGAACGTTNGCCATAACAACGGAAACGTACAGAAACAAGACTGAGGC]
consensusID : consensus_3692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence
[GTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTNTACACTGCCTTTACACGGTAAGAGCAACCGACAGAGACATCCCAATGGTGACAGGCGTCCATGACCCGCTACGGTGCGGTTGGTTCGTTTGCTAGTTACTAGTTTGTGTGTGTGTATGTGTTCGTTTTTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAACCAACAAAAGATATCGATCCCTCCCTTCACTGTGCCAACGGAAACGACACAACAGTTGGCTGCATTTTTTACTGCAAGTCCCTTTTAGTCACGTAAGCATACCCCCGCAATAGACAATACGTGTCCGCGCTTAAGATAAAAAAAGTGGAGTAGGGCAATTTGTGTGTGATAGCTGATTATTTTCGGAATATATATTTTAAATCTCACTGCGGATGCTAGCGTATGTCGATTTCGGCTTTAGTAAATGAAAGTTAGCATAAAAGGAAACGTACAGAACAGACTGAGGCGAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACTCAAATGTACAGATTTCACACCACAGAAACATTTCGCTCAACGTCAGTGTGTGGTAAAAGCTGCGGTGCATTATTTCTCCCAGGCTACGGTCTGCCTGGTGGAAAGTGTGTAACTTTTTATAGGTTATATATAAAATACTTTATACGACAATTTCTTTTAATTGCGACATTCCTTAGATGTAAGGTCGATTT]
[-] EMBL BX624667 [GTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTNTACACTGCCTTTACACGGTAAGAGCAACCGACAGAGACATCCCAATGGTGACAGGCGTCCATGACCCGCTACGGTGCGGTTGGTTCGTTTGCTAGTTACTAGTTTGTGTGTGTGTATGTGTTCGTTTTTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAACCAACAAAAGATATCGATCCCTCCCTTCACTGTGCCAACGGAAACGACACAACAGTTGGCTGCATTTTTTACTGCAAGTCCCTTTTAGTCACGTAAGCATACCCCCGCAATAGACAATACGTGTCCGCGCTTAAGATAAAAAAAGTGGAGTAGGGCAATTTGTGTGTGATAGCTGATTATTTTCGGAATATATATTTTAAATCTCACTGCGGATGCTAGCGTATGTCGATTTCGGCTTTAGTAAATGAAAGTTAGCATAAAAGGAAACGTACAGAACAGACTGAGGCGAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACTCAAATGTACAGATTTCACACCACAGAAACATTTCGCTCAACGTCAGTGTGTGGTAAAAGCTGCGGTGCATTATTTCTCCCAGGCTACGGTCTGCCTGGTGGAAAGTGTGTAACTTTTTATAGGTTATATATAAAATACTTTATACGACAATTTCTTTTAATTGCGACATTCCTTAGATGTAAGGTCGATTT]
consensusID : consensus_3692#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[CCGCCACGAATGGCACCAACGGTGGTGGAGGTGGCGTTCATCCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTCTACACTGCCTTTACACGGTAGGAGCAACCGACAGAGACATCCCAATGGTGACAGGCGTCCATGAGCCGCTACGGTGCGGTTGGTTCGTTTGCTAGTTACTAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTCGTTTTTATTGCGTCCCGTTCAACGTAGCATCCCGTAGAACCAACAAAAGATATCGATCCCTCCCTTCACTGTGCCAAGGGAAGCGACACAACTGTAGGCTGCATTTTTCTACTGCAAGTCCCTTTTAGTCACGTAAGCATACCCCCGCAATAGACAATACGTGTCCGCGCTTAAGATAAAAAAAAGTGGAGTAGGGCAATTTGTGTGTGATCGCTGATTATTTTCGGAATATATATTTTAAATCTCACTGCGGACGCTAGCGTATGTCGATTTCGGCTTTAGTAAATCAACGTTAGCATAAAAAGAAACGTACAGAACAGACTGAGGCGAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACT]
[+] EMBL BM596257 [CCGCCACGAATGGCACCAACGGTGGTGGAGGTGGCGTTCATCCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTCTACACTGCCTTTACACGGTAGGAGCAACCGACAGAGACATCCCAATGGTGACAGGCGTCCATGAGCCGCTACGGTGCGGTTGGTTCGTTTGCTAGTTACTAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTCGTTTTTATTGCGTCCCGTTCAACGTAGCATCCCGTAGAACCAACAAAAGATATCGATCCCTCCCTTCACTGTGCCAAGGGAAGCGACACAACTGTAGGCTGCATTTTTCTACTGCAAGTCCCTTTTAGTCACGTAAGCATACCCCCGCAATAGACAATACGTGTCCGCGCTTAAGATAAAAAAAAGTGGAGTAGGGCAATTTGTGTGTGATCGCTGATTATTTTCGGAATATATATTTTAAATCTCACTGCGGACGCTAGCGTATGTCGATTTCGGCTTTAGTAAATCAACGTTAGCATAAAAAGAAACGTACAGAACAGACTGAGGCGAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3692#1 ------------------------------------------------------------
consensus_3692#2 ------------------------------------------------------------
consensus_3692#0 AATTCCCGAGGTTACATGGATGACGAAGGGTACATCATTATTGCGATTTTACCGGCGTCA 60
consensus_3692#1 ------------------------------------------------------------
consensus_3692#2 ------------------------------------------------------------
consensus_3692#0 TGAACCATCTGCTGATGCCACCGCCCGCCAACTTTGGAATGCGTTCGCCAACCATCGTCA 120
consensus_3692#1 ------------------------------------------------------------
consensus_3692#2 -----------------------CCGCCACGAATGGCACCAACGGTGGTGGAGGTGGCGT 37
consensus_3692#0 CGGCGGCGACCGCAACACGTCAACGACCACGAATGGGACCAACGGTGGTGGAGGTGGGCT 180
consensus_3692#1 ------------------------------GTTGGTAGCAAACGAACTGACCCTGCGGTA 30
consensus_3692#2 TCATCCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTA 97
consensus_3692#0 CATACCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTA 240
******************************
consensus_3692#1 TATCTGCTACTACATGTTGCTGTACATCTTNTACACTGCCTTTACACGGTAAGAGCAACC 90
consensus_3692#2 TATCTGCTACTACATGTTGCTGTACATCTTCTACACTGCCTTTACACGGTAGGAGCAACC 157
consensus_3692#0 TATCTGCTACTACATGTTGCTGTACATCTTCTACACTGGCTTTACACGGTAAGAGCAACC 300
****************************** ******* ************ ********
consensus_3692#1 GACAG---AGACATCCCAATGGTGACAGGCG----TCCA-TGACCCGCTACGGTGCGG-- 140
consensus_3692#2 GACAG---AGACATCCCAATGGTGACAGGCG----TCCA-TGAGCCGCTACGGTGCGG-- 207
consensus_3692#0 GACCAGTCAGACATCCCAATGGGTGNACNCGGCGCTCCACTGACCCGCTACGGTGCGCGC 360
*** ************** * ** **** *** *************
consensus_3692#1 TTGGTTC----GTTTGC-TAG-TTACTAGTTTGTGTGTG-TGT----------------- 176
consensus_3692#2 TTGGTTC----GTTTGC-TAG-TTACTAGTTTGTGTGTG-TGTGTGTGTGTGTGTGTGTG 260
consensus_3692#0 CTGGCTCTCGCNCTTGCCTAGCTTACTAGCTTTGGAGTGATGTGTA-------------- 406
*** ** **** *** ******* ** * *** ***
consensus_3692#1 -ATGTGTTCGT--TTTTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAACC-AACAAAA 232
consensus_3692#2 TATGTGTTCGT--TTTTATTGCGTCCCGTTCAACGTAGCATCCCGTAGAACC-AACAAAA 317
consensus_3692#0 -CTGTGTTCGNCATTCTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAANNCAACGAAA 465
******** ** **************************** ***** *** ***
consensus_3692#1 --GATATCGATCCCTCCCTTCACTGTGCCAACGGAA---ACGACACA-ACAGTTGGC-TG 285
consensus_3692#2 --GATATCGATCCCTCCCTTCACTGTGCCAAGGGAA---GCGACACA-ACTGTAGGC-TG 370
consensus_3692#0 AGGATATCGATCCCTCCCTTCACTGTGCCAACGGNACACGCACCACACACAGTTGGNGTG 525
***************************** ** * * **** ** ** ** **
consensus_3692#1 CATT--TTT-TACTGCAA-GTCCCTTTT-----AGTCACGTAAGCATA-CCCCCGC-AAT 334
consensus_3692#2 CATT--TTTCTACTGCAA-GTCCCTTTT-----AGTCACGTAAGCATA-CCCCCGC-AAT 420
consensus_3692#0 CGATATTTCTTACTGCAAAGTCCCCTATTATAGAGTCACGTAAGCATAACCCCCGCCAAT 585
* * ** ******** ***** * * *************** ******* ***
consensus_3692#1 AG-ACAATACGTGTCCGC-GCTTAAGATAAAAAAA-GTGGAGTAGGGCAATTTGTGTGTG 391
consensus_3692#2 AG-ACAATACGTGTCCGC-GCTTAAGATAAAAAAAAGTGGAGTAGGGCAATTTGTGTGTG 478
consensus_3692#0 AGGACAANACGTGTCCGCCGCCTTACAGCATACNCACCACNGCTGCGCNCGCTAAGCGCG 645
** **** ********** ** * * * * * * * ** * * * *
consensus_3692#1 ATAGCTGATTATTTT-CGGAATATATATTTTAAATCTCACTGCGGATGCTAGCGTATGTC 450
consensus_3692#2 ATCGCTGATTATTTT-CGGAATATATATTTTAAATCTCACTGCGGACGCTAGCGTATGTC 537
consensus_3692#0 CCAACCTACGCTGTTGTTGACTANCCTCGCTTNATNTATTCGCGNA--CTACTATATTTC 703
* * * ** ** ** * ** * *** * *** *** **
consensus_3692#1 GATTTCGGCTTTAGTAAATGAAAGTTAGCATAAAAGGAAACGTACAGAACAGACTGAGGC 510
consensus_3692#2 GATTTCGGCTTTAGTAAATCAACGTTAGCATAAAAAGAAACGTACAGAACAGACTGAGGC 597
consensus_3692#0 --TCNCCATCTCACTGCCNGA---CTTGCCTAGCACGTA-TGTAC-GACNACATCGGCTT 756
* * * * * * * ** ** * * * **** ** * * *
consensus_3692#1 GAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACTCAAATGT 570
consensus_3692#2 GAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACT------- 650
consensus_3692#0 TATAACATGTAGAACGTTNGC-CATAACAACGGAAACGTACAGAAACAAGACTGAGGC-- 813
* ** **** * ** * ** **** * ***
consensus_3692#1 ACAGATTTCACACCACAGAAACATTTCGCTCAACGTCAGTGTGTGGTAAAAGCTGCGGTG 630
consensus_3692#2 ------------------------------------------------------------
consensus_3692#0 ------------------------------------------------------------
consensus_3692#1 CATTATTTCTCCCAGGCTACGGTCTGCCTGGTGGAAAGTGTGTAACTTTTTATAGGTTAT 690
consensus_3692#2 ------------------------------------------------------------
consensus_3692#0 ------------------------------------------------------------
consensus_3692#1 ATATAAAATACTTTATACGACAATTTCTTTTAATTGCGACATTCCTTAGATGTAAGGTCG 750
consensus_3692#2 ------------------------------------------------------------
consensus_3692#0 ------------------------------------------------------------
consensus_3692#1 ATTT 754
consensus_3692#2 ----
consensus_3692#0 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||