cluster # 3695

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Anopheles gambiae
cluster # 3695 cluster # 3695 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3695#0 length = 548 sequences # 1

consensus_3695#1 length = 368 sequences # 2

consensusID : consensus_3695#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [CCCGAGGTTAAATGTGCAGTTGGCCAAGGTTCAGACTGTTTCTTTTCTTTCTTTTTTTCTTGTTTTTGGCTGTTGCTAGCTAGTTCTTTGCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTGTTGTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGCGTGTGTGTGTGTGTGTGTGTGTGCTTGGTACTGTGAGAAAGAAAATGTCTGTCAATGTGCACTAAGCCACGACACAAATCGGAAGCACCAGTTCGTTCGGTTTTGAAATGAACAAAAAAATACAATTCTTCATCACGTGCATTCAGTATTACGAACACAAGCAAACACAC]

[+] EMBL AL692569             [CCCGAGGTTAAATGTGCAGTTGGCCAAGGTTCAGACTGTTTCTTTTCTTTCTTTTTTTCTTGTTTTTGGCTGTTGCTAGCTAGTTCTTTGCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTGTTGTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGCGTGTGTGTGTGTGTGTGTGTGTGCTTGGTACTGTGAGAAAGAAAATGTCTGTCAATGTGCACTAAGCCACGACACAAATCGGAAGCACCAGTTCGTTCGGTTTTGAAATGAACAAAAAAATACAATTCTTCATCACGTGCATTCAGTATTACGAACACAAGCAAACACAC]




>consensus_3695#0
CCCGAGGTTAAATGTGCAGTTGGCCAAGGTTCAGACTGTTTCTTTTCTTTCTTTTTTTCT
TGTTTTTGGCTGTTGCTAGCTAGTTCTTTGCCAGTTTTCAAGCGTGTCCCCATGACGTCA
TCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAG
GCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTAT
TTAAACTGTAGAGTTAAAGTTTTGTTGTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTT
GAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATG
AGTAATGTGTATGTGCGCGTGTGTGTGTGTGTGTGTGTGTGCTTGGTACTGTGAGAAAGA
AAATGTCTGTCAATGTGCACTAAGCCACGACACAAATCGGAAGCACCAGTTCGTTCGGTT
TTGAAATGAACAAAAAAATACAATTCTTCATCACGTGCATTCAGTATTACGAACACAAGC
AAACACAC

consensusID : consensus_3695#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 368
fasta sequence

                              [AGCTAGTTCTTTGCCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGGGAGCTGTTCACATTAAAACGATCAC]

[-] EMBL BX614075             [AGCTAGTTCTTTGCCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGGGAGCTGTTCACATTAAAACGATCAC]
[-] EMBL BX614074             [                         GCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGGGAGCTGTTCACATTAAAACGATCAC]




>consensus_3695#1
AGCTAGTTCTTTGCCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTT
TGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAA
CAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTA
AAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACA
AACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATG
TGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGGGAGCTGTTCACATTAAA
ACGATCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3695#0      CCCGAGGTTAAATGTGCAGTTGGCCAAGGTTCAGACTGTTTCTTTTCTTTCTTTTTTTCT 60
consensus_3695#1      ------------------------------------------------------------
                                                                                  

consensus_3695#0      TGTTTTTGGCTGTTGCTAGCTAGTTCTTTGCC-AGTTTTCAAGCGTGTCCCCATGACGTC 119
consensus_3695#1      -----------------AGCTAGTTCTTTGCCCAGTTTTCAAGCGTGTCCCCATGACGTC 43
                                       *************** ***************************

consensus_3695#0      ATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCA 179
consensus_3695#1      ATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCA 103
                      ************************************************************

consensus_3695#0      GGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTA 239
consensus_3695#1      GGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTA 163
                      ************************************************************

consensus_3695#0      TTTAAACTGTAGAGTTAAAGTTTT-GTTG--TTGTTTCGTTCGTTTTGTTCGAGATTATT 296
consensus_3695#1      TTTAAACTGTAGAGTTAAAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATT 223
                      ************************ ***   *****************************

consensus_3695#0      GTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGT 356
consensus_3695#1      GTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGT 283
                      ************************************************************

consensus_3695#0      GATGAGTAATGTGTATGTGCGCGTGTGTGTGTGTGTGTGTGT-GTGCTTGGT-ACTGTGA 414
consensus_3695#1      GATGAGTAATGTGTATGTGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGG 343
                      ********************* ******* *****   **** **  ** **  * * * 

consensus_3695#0      GAAAGAAAATGTCTGTCAATGTGCACTAAGCCACGACACAAATCGGAAGCACCAGTTCGT 474
consensus_3695#1      GAG---------CTGTTCACATTAAAACGATCAC-------------------------- 368
                      **          ****  *  *  *      ***                          

consensus_3695#0      TCGGTTTTGAAATGAACAAAAAAATACAATTCTTCATCACGTGCATTCAGTATTACGAAC 534
consensus_3695#1      ------------------------------------------------------------
                                                                                  

consensus_3695#0      ACAAGCAAACACAC 548
consensus_3695#1      --------------