cluster # 3700

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Anopheles gambiae
cluster # 3700 cluster # 3700 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3700#0 length = 449 sequences # 2

consensus_3700#1 length = 293 sequences # 1

consensusID : consensus_3700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 449
fasta sequence

                              [CCGCCCACGCGTCCGTTGCAAAGGAAGCTGGCGCTGCAAAGAAATTAACAATACTCGAATATTATCTTCCACCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCAGTGACTTTCATCGCAGGGTAAATATATTGCACAACAATTGCTACGAAACGCAACAAAATGAGTGCGAAAAAGTATCTAAAGATGCCAGCCCAACAGCCAGCGCAGCCTGCGGCCAAAACGGAAAAGGAGGAGCAATTATGGAACGCACTGAAGCGCCACATCATGCGGGAACGGGAACGGAAAAAGCAAGAGCTCCAGGCCGAGGTATAGGAGGAGCGGTTGCGACGGGAGCGGGAGGAACGGGAAAAGCAGGACGTCATGACGCTCGGCGAGACGAAGGAGCAAATACTGATGCTCGAAAAGAACTTGGACGAACTGCGGAACGAAAA]

[+] EMBL BM617551             [CCGCCCACGCGTCCGTTGCAAAGGAAGCTGGCGCTGCAAAGAAATTAACAATACTCGAATATTATCTTCCACCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCAGTGACTTTCATCGCAGGGTAAATATATTGCACAACAATTGCTACGAAACGCAACAAAATGAGTGCGAAAAAGTATCTAAAGATGCCAGCCCAACAGCCAGCGCAGCCTGCGGCCAAAACGGAAAAGGAGGAGCAATTATGGAACGCACTGAAGCGCCACATCATGCGGGAACGGGAACGGAAAAAGCAAGAGCTCCAGGCCGAGGTATAGGAGGAGCGGTTGCGACGGGAGCGGGAGGAACGGGAAAAGCAGGACGTCATGACGCTCGGCGAGACGAAGGAGCAAATACTGATGCTCGAAAAGAACTTGGACGAACTGCG         ]
[+] EMBL BX626046             [                                                                    CCACCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCAGTGACTTTCAGCGCAGTGTAAATATATTGCAGANCAATTGCTACGAAACGCAACAAAATGAGTGCGAAAAAGTATCTAAAGATGCCAGCCCANCAGCCAGCGCAGCCTGCNGCCAAAACGGAAAAGGANGAGCAATTATGGAACGCACTGAANCGCCACATCATGCGGGAACGGGAACGGNAAAAGCAAGAGCTCCNGGCCGAGGTAGAGGAGGAGCGGTTGCGACGGGAGCGGNAGGAACGGGAAANGCAGGACGTCATGACTCTCGGCGAGACGAAGGAGCAAATACTGATGCTCGAAAAGAACTTGGACGAACTGCGGAACGAAAA]




>consensus_3700#0
CCGCCCACGCGTCCGTTGCAAAGGAAGCTGGCGCTGCAAAGAAATTAACAATACTCGAAT
ATTATCTTCCACCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCA
GTGACTTTCATCGCAGGGTAAATATATTGCACAACAATTGCTACGAAACGCAACAAAATG
AGTGCGAAAAAGTATCTAAAGATGCCAGCCCAACAGCCAGCGCAGCCTGCGGCCAAAACG
GAAAAGGAGGAGCAATTATGGAACGCACTGAAGCGCCACATCATGCGGGAACGGGAACGG
AAAAAGCAAGAGCTCCAGGCCGAGGTATAGGAGGAGCGGTTGCGACGGGAGCGGGAGGAA
CGGGAAAAGCAGGACGTCATGACGCTCGGCGAGACGAAGGAGCAAATACTGATGCTCGAA
AAGAACTTGGACGAACTGCGGAACGAAAA

consensusID : consensus_3700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [AGATCCCCCGAGGTTAAGCTGGCGCTGCAAAGAAATTACAAAAAGAAATAATATCTTCCACCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCAGTGACTTTCAGCGCAGTGTAAATATATTGCAGAACAATTGCTACGAAACGCAACAAAATGAGTGCGAAAAAGTATCTAAAGATGCCAGCCCAACAGCCAGCGCAGCCTGCGGCCAAAACGGAAAAGGGAGGAAGCAATTATGGGAACGCAACTGGAAAGGCGCCACATCATGCCGGGGAACCGG]

[+] EMBL AL692631             [AGATCCCCCGAGGTTAAGCTGGCGCTGCAAAGAAATTACAAAAAGAAATAATATCTTCCACCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCAGTGACTTTCAGCGCAGTGTAAATATATTGCAGAACAATTGCTACGAAACGCAACAAAATGAGTGCGAAAAAGTATCTAAAGATGCCAGCCCAACAGCCAGCGCAGCCTGCGGCCAAAACGGAAAAGGGAGGAAGCAATTATGGGAACGCAACTGGAAAGGCGCCACATCATGCCGGGGAACCGG]




>consensus_3700#1
AGATCCCCCGAGGTTAAGCTGGCGCTGCAAAGAAATTACAAAAAGAAATAATATCTTCCA
CCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCAGTGACTTTCAG
CGCAGTGTAAATATATTGCAGAACAATTGCTACGAAACGCAACAAAATGAGTGCGAAAAA
GTATCTAAAGATGCCAGCCCAACAGCCAGCGCAGCCTGCGGCCAAAACGGAAAAGGGAGG
AAGCAATTATGGGAACGCAACTGGAAAGGCGCCACATCATGCCGGGGAACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3700#0      CCGCCCACGCGTCCGTTGCAAAGGAAGCTGGCGCTGCAAAGAAATTAACAATACTCGAAT 60
consensus_3700#1      --------AGATCCCCCG-AGGTTAAGCTGGCGCTGCAAAGAAATTACAAAAAG--AAAT 49
                                 ***   * *    ***********************  ** *    ***

consensus_3700#0      ATTATCTTCCACCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCA 120
consensus_3700#1      AATATCTTCCACCTAGCTTGTGCAAACAACGGAGAAAGCGACTACCCGTAGACCAACGCA 109
                      * **********************************************************

consensus_3700#0      GTGACTTTCATCGCAGGGTAAATATATTGCACAACAATTGCTACGAAACGCAACAAAATG 180
consensus_3700#1      GTGACTTTCAGCGCAGTGTAAATATATTGCAGAACAATTGCTACGAAACGCAACAAAATG 169
                      ********** ***** ************** ****************************

consensus_3700#0      AGTGCGAAAAAGTATCTAAAGATGCCAGCCCAACAGCCAGCGCAGCCTGCGGCCAAAACG 240
consensus_3700#1      AGTGCGAAAAAGTATCTAAAGATGCCAGCCCAACAGCCAGCGCAGCCTGCGGCCAAAACG 229
                      ************************************************************

consensus_3700#0      GAAAAGGAGG--AGCAATTATGG-AACGCA-CTGAA---GCGCCACATCATGCGGGAACG 293
consensus_3700#1      GAAAAGGGAGGAAGCAATTATGGGAACGCAACTGGAAAGGCGCCACATCATGCCGG---G 286
                      *******  *  *********** ****** *** *   ************** **   *

consensus_3700#0      GGAACGGAAAAAGCAAGAGCTCCAGGCCGAGGTATAGGAGGAGCGGTTGCGACGGGAGCG 353
consensus_3700#1      GAACCGG----------------------------------------------------- 293
                      * * ***                                                     

consensus_3700#0      GGAGGAACGGGAAAAGCAGGACGTCATGACGCTCGGCGAGACGAAGGAGCAAATACTGAT 413
consensus_3700#1      ------------------------------------------------------------
                                                                                  

consensus_3700#0      GCTCGAAAAGAACTTGGACGAACTGCGGAACGAAAA 449
consensus_3700#1      ------------------------------------