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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1089 fasta sequence
[AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATTGGTTGTGCCGCGGACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGATAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTTGTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCGNTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCTGCCTCACCGAATGANAGATTGTATATCTGCCCTGTTAATGGCGTCATGTAGCAGTACTTCATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNGACAGAGCATTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATAAGCGATAGTGAAATCCCTGCGACACAAACACCGACGAGNACCCTCTCTATCCTGGAAATACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCGACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACGAGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGAAGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAAGCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACAAGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCACACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAACAACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGGCAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCATTGCACAGGAAAAAG]
[+] EMBL AL930954 [AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATTGGTTGTGCCGCGGACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGATAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTTGTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCGNTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCTGCCTCACCGAATGANAGATTGTATATCTGCCCTGTTAATGGCGTCATGTAGCAGTACTTCATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNGACAGAGCATTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATAAGCGATAGTGAAATCCCTGCGACACAAACACCGACGAGNACCCTCTCTATCCTGGAAATACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCGACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACGAGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGAAGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAAGCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACAAGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCACACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAACAACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGGCAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCATTGCACAGGAAAAAG]
consensusID : consensus_3706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[GGCACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAATTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAATTGTATATCTGCCCGTTAATGGCTCATGTACAGACTTCATACGATGCATTGGTGGAGTGGCTTATGAAAGTTCATGCCAGCCAGGCTTGTTTTTTGATCCAGCACTACAAGAATGTAATTTGGAAAGCGAGGTAGATTGCGTAGTAAATCCCTGCACACAACCACCGCCAGACCCTCCTATCCTGGAAATCTATCCAAACCCAGGAAACTGCAAAGAGTATATCCTATGTTTGAATGGCGAAGGAATTGTTCGGCAATGCGCTCCAGGACTGTTCTTTGATGAGCAGGCAACGAGTTGTGTAGCTGGCTTTGAG]
[+] EMBL BX623318 [GGCACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGTGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAATTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAATTGTATATCTGCCCGTTAATGGCTCATGTACAGACTTCATACGATGCATTGGTGGAGTGGCTTATGAAAGTTCATGCCAGCCAGGCTTGTTTTTTGATCCAGCACTACAAGAATGTAATTTGGAAAGCGAGGTAGATTGCGTAGTAAATCCCTGCACACAACCACCGCCAGACCCTCCTATCCTGGAAATCTATCCAAACCCAGGAAACTGCAAAGAGTATATCCTATGTTTGAATGGCGAAGGAATTGTTCGGCAATGCGCTCCAGGACTGTTCTTTGATGAGCAGGCAACGAGTTGTGTAGCTGGCTTTGAG]
consensusID : consensus_3706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence
[ACCCGCACTTAGGCTATTATTGGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTGAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAACTTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTTCATACGATGCACTTGGTGGAGTGGCTTATGAAAGTTCATGCCANGCCAGAGTCTTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTTGGACAAGCGAGGTAGATTGCGTAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAAGTCTATCCAAAGCCAGGAAACTGCNAAGAGTATATCCT]
[+] EMBL AL692735 [ACCCGCACTTAGGCTATTATTGGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGGAAACGGCGACAGCTGACGGATTTCTCCCCCATCCAACTGAATGTACCAAGTACTTTTCGTGCTACGGCGGTGAAAGGTTACGAGCAGACATGTCCTGATCAAAAATATTTCGATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACTGCGTCGTGAACAACTGCCCACCGAATGAAACTTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTTCATACGATGCACTTGGTGGAGTGGCTTATGAAAGTTCATGCCANGCCAGAGTCTTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTTGGACAAGCGAGGTAGATTGCGTAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAAGTCTATCCAAAGCCAGGAAACTGCNAAGAGTATATCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3706#0 AGATCGCCCGACGGTTTATCGGATGATAAAGGAAACATTACTGCTCNGTTGGNTATTATT 60
consensus_3706#1 ------------------------------------------------------------
consensus_3706#2 ---------------------------------------ACCCGCACTTAGGCTATTATT 21
consensus_3706#0 GGTTGTGCCGCGG-ACAAANAACTACAACTCAGTCTCCAGCGAGTGATCCATG-TGTGGA 118
consensus_3706#1 ----------GGC-ACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATG-TGTGG- 47
consensus_3706#2 GGTTGTGCCGCGGTACAAACAACTACAACTCAGTCTCCAGCGAGTGATCCATGATGTGG- 80
* ***** ********************************* *****
consensus_3706#0 TAACTGGCGACAGCTGACGGATTTCTCCCCCATCACAACGTGAATGTACCACAGTACTTT 178
consensus_3706#1 -AAACGGCGACAGCTGACGGATTTCTCCCCCATC-CAAC-TGAATGTACCA-AGTACTTT 103
consensus_3706#2 -AAACGGCGACAGCTGACGGATTTCTCCCCCATC-CAAC-TGAATGTACCA-AGTACTTT 136
** ***************************** **** *********** ********
consensus_3706#0 GTACGTGCTACGGCGGACAAAGGTTNCAGAGCAGACATGTCCTGATCANAACATATTTCG 238
consensus_3706#1 --TCGTGCTACGGCGG-TAAAGGTTAC-GAGCAGACATGTCCTGATCAAAA-ATATTTCG 158
consensus_3706#2 --TCGTGCTACGGCGGTGAAAGGTTAC-GAGCAGACATGTCCTGATCAAAA-ATATTTCG 192
************* ******* * ******************** ** ********
consensus_3706#0 NTCCAATNAATTNNGTTATGCGACATTCCTGGGAATGTAGACTTGCGTCGTGAACAAGCT 298
consensus_3706#1 ATCCAATTAATTTG-TTATGCGACATTCCTGAGAATGTAGACT-GCGTCGTGAACAA-CT 215
consensus_3706#2 ATCCAAGTTAATTTGTTATGCGACATTCCTGAGAATGTAGACT-GCGTCGTGAACAA-CT 250
***** * * **************** *********** ************* **
consensus_3706#0 GCCTCACCGAATGANAGATTGTATATCTGCC-CTGTTAATGGCGTCATGTAGCAGTACTT 357
consensus_3706#1 GCC-CACCGAATGAAA--TTGTATATCTGCC-C-GTTAATGGC-TCATGTA-CAG-ACTT 267
consensus_3706#2 GCC-CACCGAATGAAAC-TTGTATATCTGACACCGTTAACTGGCTCATGGTACACGACTT 308
*** ********** * *********** * * ***** * ***** ** ****
consensus_3706#0 CATCACGATGCGATATGGTGTGAGATGGCGTNTATGCAAAGTTCATGCCNG-ACAGAGCA 416
consensus_3706#1 CAT-ACGATGCATTG----GTGGAGTGGCTTATG---AAAGTTCATGCCAG-CCAGGCTT 318
consensus_3706#2 CAT-ACGATGCACTTG---GTGGAGTGGCTTATG---AAAGTTCATGCCANGCCAGAGTC 361
*** ******* * *** **** * * ************ ***
consensus_3706#0 TTGTTTTGTTAGTATCCAGCACTGACTAAGAATGTAATATTGGGAGAAGCGAGGGTAATA 476
consensus_3706#1 GTTTTTTG-----ATCCAGCACTA--CAAGAATGTAATTT---GGAAAGCGAGGTAGATT 368
consensus_3706#2 TTGTTTANATTGATCCNAGCACTACTAGAGAATGTAATTT--GGACAAGCGAGGTAGATT 419
* *** * ****** ********** * * ******** **
consensus_3706#0 AGCGATAGTGAAATCCCTGCGACA-CAA-ACACCGACGAGNACCCTCTCTATCCTGGAAA 534
consensus_3706#1 -GCG-TAGT-AAATCCCTGC-ACA-CAA-CCACCGCCA--GACCCTC-CTATCCTGGAAA 419
consensus_3706#2 -GCG-TAGTAAANTCCCTGGGACAACAATGCANCGGGCAGANACCTACCTATCCTGGAAA 477
*** **** ** ****** *** *** ** ** *** ************
consensus_3706#0 TACTATCCAACAGCCGAGGAAANCTGCACCACAGAGTATATCCTATGTTATGAATGCGCG 594
consensus_3706#1 T-CTATCCAA--ACCCAGGAAACTG----CAAAGAGTATATCCTATGTT-TGAATG-GCG 470
consensus_3706#2 GTCTATCCAA--AGCCAGGAAACTG----CNAAGAGTATATCCT---------------- 515
******** * ****** * ************
consensus_3706#0 ACGGNATCTGTCCGGTCGAAAGCGCTCCAGGAGCTGTTCTNCTGAANTGACAGGCAAACG 654
consensus_3706#1 AAGGAAT-TGTTCGGC--AATGCGCTCCAGGA-CTGTTCTTT--GATGAGCAGGCAA-CG 523
consensus_3706#2 ------------------------------------------------------------
consensus_3706#0 AGCTTGCTGTAGCTGGGCTTGGAGGGTCGATGGCTGGCCCNAGATGAAANTTGCTACCGA 714
consensus_3706#1 AGTT--GTGTAGCTGGCTTTGAG------------------------------------- 544
consensus_3706#2 ------------------------------------------------------------
consensus_3706#0 AGACCACCCCCGCNANACTCGAAAACNAANCAAGCCGCGCNTCACGGCCANACACNGCAA 774
consensus_3706#1 ------------------------------------------------------------
consensus_3706#2 ------------------------------------------------------------
consensus_3706#0 GCATCGCGGCNCTNAGGGCGACACGNCACGCACCGAAACNCCGCNGGACATGNCACAACA 834
consensus_3706#1 ------------------------------------------------------------
consensus_3706#2 ------------------------------------------------------------
consensus_3706#0 AGAGACCNCCGGAACCCACGCCAAGAAGACGNNCACCGTNAACACNACAAGCAATGTCAC 894
consensus_3706#1 ------------------------------------------------------------
consensus_3706#2 ------------------------------------------------------------
consensus_3706#0 ACAAGCCGCAGGTACCCAAACNGGAAAAGCAGGCGTCNACGACAAACACGGCAACAAAAC 954
consensus_3706#1 ------------------------------------------------------------
consensus_3706#2 ------------------------------------------------------------
consensus_3706#0 AACACAACGACAAACAAAACCGNCNGTTAGNGNCANCAAAGACAACACCTCAAANGAAGG 1014
consensus_3706#1 ------------------------------------------------------------
consensus_3706#2 ------------------------------------------------------------
consensus_3706#0 CAAAACCAACGGGAAAGCCGCACACACGCNACGGNAACCGTGGCCCACAACAGTAACCCA 1074
consensus_3706#1 ------------------------------------------------------------
consensus_3706#2 ------------------------------------------------------------
consensus_3706#0 TTGCACAGGAAAAAG 1089
consensus_3706#1 ---------------
consensus_3706#2 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||