cluster # 3712

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Anopheles gambiae
cluster # 3712 cluster # 3712 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3712#0 length = 707 sequences # 2

consensus_3712#1 length = 676 sequences # 1

consensusID : consensus_3712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 707
fasta sequence

                              [CCGCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGAATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAA-GGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAGC--AAAAAAACGGGATGAC--AGAAAACGAAGCGCGCG------TGTGTGT--GTGTGTGT--GTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAAATAGAAAAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTACTGTAAAAATTGTAAAGCGGAGAGAGGAGAGGATCGTGAAAACGATGGTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAAGGGTAAAGAGAAAAATCAGAAACAAAGAAACAAACGAACATAAAATGTATACAAAA]

[+] EMBL BM608404             [CCGCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGAATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAA GGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAGC  AAAAAAACGGGATGAC  AGAAAACGAAGCGCGCG      TGTGTGT  GTGTGTGT  GTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAAATAGAAAAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTACTGTAAAAATTGTAAAGCGGAGAGAGGAGAGGATCGTGAAAACGATGGTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAAGGGTAAAGAGAAA                                           ]
[+] EMBL BX609590             [                                                        AGGAAGGGTAAGAAAAAATCGCAGAATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAATGGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCGAAA GGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAGCAAAAAAAAACGGGATGACAGAGAAAACGAAGCGCGTGTGTGTTTGTGTGTCCGTGTGTGTCCGTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTGTCCGC   TGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAAATAG  AAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTACTGCTAAA  TGTAAAGCGGA     GAGAGGATCGTGAAAACGAT GTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAAGGGTAAAGAGAAAAATCAGAAACAAAGAAACAAACGAACATAAAATGTATACAAAA]




>consensus_3712#0
CCGCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGA
AGGGTAAGAAAAAATCGCAGAATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAA
GGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAG
CAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAA
GCAAAAAAACGGGATGACAGAAAACGAAGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGT
GAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGTTGCAACGAAATCAT
ACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTA
ATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATA
CTTACAAGCTCTATAATAATTAAATAGAAAAAAAAAAACGAAAGAAACAATTATGTTGAA
ACGATGTACTATTACTGTAAAAATTGTAAAGCGGAGAGAGGAGAGGATCGTGAAAACGAT
GGTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAAGGGTAAAGA
GAAAAATCAGAAACAAAGAAACAAACGAACATAAAATGTATACAAAA

consensusID : consensus_3712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCGATAATTTATAACACAAAATGCCACATTTAATATAAATATATTCTATACATAAATGTAGCATATAGGAAGGATAGTTCGTGTCCCAAACCACTCGAAGATCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGAAGCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAAAGGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAAACGGGATGACAGAGAAAACGAAGCGCGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAATAGAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTA]

[+] EMBL BM649717             [CCGATAATTTATAACACAAAATGCCACATTTAATATAAATATATTCTATACATAAATGTAGCATATAGGAAGGATAGTTCGTGTCCCAAACCACTCGAAGATCGCTGTTCAAACTAATTTTGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGAAGCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAAAGGAGGCAGCAGGTCGATGATACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAGGGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAAACGGGATGACAGAGAAAACGAAGCGCGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGCAACGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCCTTCATACTTACAAGCTCTATAATAATTAATAGAAAAAAAACGAAAGAAACAATTATGTTGAAACGATGTACTATTA]




>consensus_3712#1
CCGATAATTTATAACACAAAATGCCACATTTAATATAAATATATTCTATACATAAATGTA
GCATATAGGAAGGATAGTTCGTGTCCCAAACCACTCGAAGATCGCTGTTCAAACTAATTT
TGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGA
AGCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAAAGGAGGCAGCAGGTCGATGAT
ACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAG
GGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAAACGGGATGACAGAGAAAAC
GAAGCGCGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGCAACGA
AATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCGCGT
GGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACATCC
TTCATACTTACAAGCTCTATAATAATTAATAGAAAAAAAACGAAAGAAACAATTATGTTG
AAACGATGTACTATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3712#0      ------------------------------------------------------------
consensus_3712#1      CCGATAATTTATAACACAAAATGCCACATTTAATATAAATATATTCTATACATAAATGTA 60
                                                                                  

consensus_3712#0      ---------------------------------------CCGCGCTGTTCAAACTAATTT 21
consensus_3712#1      GCATATAGGAAGGATAGTTCGTGTCCCAAACCACTCGAAGATCGCTGTTCAAACTAATTT 120
                                                                ******************

consensus_3712#0      TGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGA 81
consensus_3712#1      TGAGATGTAGGCGATAAAATGCGAGAAATGGAGAGAGGAAGGGTAAGAAAAAATCGCAGA 180
                      ************************************************************

consensus_3712#0      ATCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAA-GGAGGCAGCAGGTCGATGAT 140
consensus_3712#1      AGCGTAAGAACGGAAAATTAACACTAGACCATAAAAAAAAGGAGGCAGCAGGTCGATGAT 240
                      * ************************************* ********************

consensus_3712#0      ACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAG 200
consensus_3712#1      ACTGTAAATTGAATAGAAAACGCATGCGGGGGTATAAAAGCAAAATGTACTGAGCAAAAG 300
                      ************************************************************

consensus_3712#0      GGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAG-CAAAAAAACGG-GATGAC 258
consensus_3712#1      GGGTTTAGCAGCAGCCAGCAGCAGCAAACAGAAGCAAAAAAACGGGATGACAGAGAAAAC 360
                      ****************************************  *   *  ** * **  **

consensus_3712#0      AGAAAACGAA---------------------------GCGCGCGTGTGTGTGTGTGTGTG 291
consensus_3712#1      GAAGCGCGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 420
                        *   **                             * * * *****************

consensus_3712#0      TGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTTGTTGCAA 351
consensus_3712#1      TGTGTGTGTGAATGAGTGTGTGTGTGTGTGCGTGTTTGCATGTATCCGCTGTT---GCAA 477
                      *****************************************************   ****

consensus_3712#0      CGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCG 411
consensus_3712#1      CGAAATCATACACAACAAAAAAGCTCACCCACTTCGTTTTCTCTCCTAACTGCAGTTGCG 537
                      ************************************************************

consensus_3712#0      CGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACA 471
consensus_3712#1      CGTGGTTTAATTTAATAGTCCTACCAGTAATTGAAGCAAAAGCAAAACAAAAGCAAAACA 597
                      ************************************************************

consensus_3712#0      TCCTTCATACTTACAAGCTCTATAATAATTAAATAGAAAAAAAAAAACGAAAGAAACAAT 531
consensus_3712#1      TCCTTCATACTTACAAGCTCTATAATAATTAA----TAGAAAAAAAACGAAAGAAACAAT 653
                      ********************************     * *********************

consensus_3712#0      TATGTTGAAACGATGTACTATTACTGTAAAAATTGTAAAGCGGAGAGAGGAGAGGATCGT 591
consensus_3712#1      TATGTTGAAACGATGTACTATTA------------------------------------- 676
                      ***********************                                     

consensus_3712#0      GAAAACGATGGTAAGGGACGGAGAGGGAGAAGTATACAATAAGCAAGGTAGAGCGAGGAA 651
consensus_3712#1      ------------------------------------------------------------
                                                                                  

consensus_3712#0      GGGTAAAGAGAAAAATCAGAAACAAAGAAACAAACGAACATAAAATGTATACAAAA 707
consensus_3712#1      --------------------------------------------------------