cluster # 3713

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Anopheles gambiae
cluster # 3713 cluster # 3713 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3713#0 length = 752 sequences # 1

consensus_3713#1 length = 651 sequences # 2

consensusID : consensus_3713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 752
fasta sequence

                              [GGCAGAATCNCGCACGAGGCTTCTCTCTGTGCTGGAAAATTNCTTGCAAAGCATTTCGTGCACTAAAATTCGTTGAACTAAACGCAATATACAAGCTGTTAACCAAATAAGCGATGGCTGTACTACAAGGGTGCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAGCTAGTCCAGCAGTGAGGTGGAGTTTCGCAATGAAGAAAATCGAGGAGGACCTGAAAGTGAGCAACATCGAGAACAAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCTCCACCATCGGGATTGGTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGGGAGCGGGAGAAAAAGCTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCACTGGAAGCGAAGCTGGCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTTGATCCGGACGATGAACCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAGGAATCGGAAAAGGAGGATGTCAAGGAGGAGCTGACCGTTGTTAAGCGGTCCTGGAAAGGAGCAGGGTACCGAGACGGGGGTGAAGAAGATTCGTAAANNACCCGGACGTCGATACCGTTCGTTTCTGCCGGACCGGGGAGGCGTGAAGGAGCGGGGACAATTCGTTTGGCCGCGGAGGGAACTGCGCCAGGAATGGGGCCGATGAAGGCAGG]

[+] EMBL BX467642             [GGCAGAATCNCGCACGAGGCTTCTCTCTGTGCTGGAAAATTNCTTGCAAAGCATTTCGTGCACTAAAATTCGTTGAACTAAACGCAATATACAAGCTGTTAACCAAATAAGCGATGGCTGTACTACAAGGGTGCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAGCTAGTCCAGCAGTGAGGTGGAGTTTCGCAATGAAGAAAATCGAGGAGGACCTGAAAGTGAGCAACATCGAGAACAAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCTCCACCATCGGGATTGGTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGGGAGCGGGAGAAAAAGCTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCACTGGAAGCGAAGCTGGCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTTGATCCGGACGATGAACCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAGGAATCGGAAAAGGAGGATGTCAAGGAGGAGCTGACCGTTGTTAAGCGGTCCTGGAAAGGAGCAGGGTACCGAGACGGGGGTGAAGAAGATTCGTAAANNACCCGGACGTCGATACCGTTCGTTTCTGCCGGACCGGGGAGGCGTGAAGGAGCGGGGACAATTCGTTTGGCCGCGGAGGGAACTGCGCCAGGAATGGGGCCGATGAAGGCAGG]




>consensus_3713#0
GGCAGAATCNCGCACGAGGCTTCTCTCTGTGCTGGAAAATTNCTTGCAAAGCATTTCGTG
CACTAAAATTCGTTGAACTAAACGCAATATACAAGCTGTTAACCAAATAAGCGATGGCTG
TACTACAAGGGTGCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAG
CTAGTCCAGCAGTGAGGTGGAGTTTCGCAATGAAGAAAATCGAGGAGGACCTGAAAGTGA
GCAACATCGAGAACAAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCT
CCACCATCGGGATTGGTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGG
GAGCGGGAGAAAAAGCTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCA
CTGGAAGCGAAGCTGGCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTT
GATCCGGACGATGAACCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAG
GAATCGGAAAAGGAGGATGTCAAGGAGGAGCTGACCGTTGTTAAGCGGTCCTGGAAAGGA
GCAGGGTACCGAGACGGGGGTGAAGAAGATTCGTAAANNACCCGGACGTCGATACCGTTC
GTTTCTGCCGGACCGGGGAGGCGTGAAGGAGCGGGGACAATTCGTTTGGCCGCGGAGGGA
ACTGCGCCAGGAATGGGGCCGATGAAGGCAGG

consensusID : consensus_3713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 651
fasta sequence

                              [CCGACCAATTCCTTCTCTCTGTGTGGAAAATTTTGCAAAGCATTTCGTGCACTAAAATTCGTTGAACTAAACGCAATATACAAGCTGGTAACCAAATAAGCGATGGCGTACTACAAGGGTGCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAGCTAGCCCAGCAGGAGGTGGAGTTTCGCAAGAAGAAAATCGAGGAGGACCTGAAAGTGAGCAACATCGAGAACAAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCTCCACCATCGGGTTGGTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGGGAGCGGGAGAAAAAGCTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCACTGGAAGCGAAGCTGGCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTTGATCCGGACGATGAACCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAGGAATCGGAAAAGGAGGATGTCAAGGAGGAGCTGACCCGTTGTTAAGCGGTCCTGGAAGGAGCAGGTACCGAGCGGGGTGAAGAAGATTCGTAAAAACCCGGACGTCGATACGTCGTTTCTGCCGGA]

[+] EMBL BM608376             [CCGACCAATTCCTTCTCTCTGTGTGGAAAATTTTGCAAAGCATTTCGTGCACTAAAATTCGTTGAACTAAACGCAATATACAAGCTGGTAACCAAATAAGCGATGGCGTACTACAAGGGTGCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAGCTAGCCCAGCAGGAGGTGGAGTTTCGCAAGAAGAAAATCGAGGAGGACCTGAAAGTGAGCAACATCGAGAACAAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCTCCACCATCGGGTTGGTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGGGAGCGGGAGAAAAAGCTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCACTGGAAGCGAAGCTGGCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTTGATCCGGACGATGAACCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAGGAATCGGAAAAGGAGGATGTCAAGGAGGAGCTGACCCGTTGTTAAGCGGTCCTGGAAGGAGCAGGTACCGAGCGGGGTGAAGAAGATTCGTAAAAACCCGGACGTCGATACGTCGTTTCTGCCGGA]
[+] EMBL BM657598             [  ccgCAATTCCTTCTCTCTGTGTGGAAAATTTTGCAAAGCATTTCGTGCACTAAAATTCGTTGAACTAAACGCAATATACAAGCTGTTAACCAAATAAGCGATGGCGTACTACAAGGGTGCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAGCTAGCCCAGCAGGAGGTGGAGTTTCGCAAGAAGAAAATCGAGGAGGACCTGAAAGTGAGCAACATCGAGAACAAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCTCCACCATCGGGTTGGTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGGGAGCGGGAGAAAAAGCTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCACTGGAAGCGAAGCTGGCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTTGATCCGGACGATGAACCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAGGAATCGGAAAAGGAGGATGTC                                                                                                         ]




>consensus_3713#1
CCGACCAATTCCTTCTCTCTGTGTGGAAAATTTTGCAAAGCATTTCGTGCACTAAAATTC
GTTGAACTAAACGCAATATACAAGCTGGTAACCAAATAAGCGATGGCGTACTACAAGGGT
GCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAGCTAGCCCAGCAG
GAGGTGGAGTTTCGCAAGAAGAAAATCGAGGAGGACCTGAAAGTGAGCAACATCGAGAAC
AAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCTCCACCATCGGGTTG
GTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGGGAGCGGGAGAAAAAG
CTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCACTGGAAGCGAAGCTG
GCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTTGATCCGGACGATGAA
CCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAGGAATCGGAAAAGGAG
GATGTCAAGGAGGAGCTGACCCGTTGTTAAGCGGTCCTGGAAGGAGCAGGTACCGAGCGG
GGTGAAGAAGATTCGTAAAAACCCGGACGTCGATACGTCGTTTCTGCCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3713#0      GGCAGAATCNCGCACGAGGCTTCTCTCTGTGCTGGAAAATTNCTTGCAAAGCATTTCGTG 60
consensus_3713#1      --------CCGACCAATTCCTTCTCTCTGTG-TGGAAAATTT--TGCAAAGCATTTCGTG 49
                              *   *      ************ *********   ****************

consensus_3713#0      CACTAAAATTCGTTGAACTAAACGCAATATACAAGCTGTTAACCAAATAAGCGATGGCTG 120
consensus_3713#1      CACTAAAATTCGTTGAACTAAACGCAATATACAAGCTGGTAACCAAATAAGCGATGGC-G 108
                      ************************************** ******************* *

consensus_3713#0      TACTACAAGGGTGCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAG 180
consensus_3713#1      TACTACAAGGGTGCCGCCTCGGAAGGGGGCCGCGCGGCCCAGCTTATGAAGCGGCGCGAG 168
                      ************************************************************

consensus_3713#0      CTAGTCCAGCAGTGAGGTGGAGTTTCGCAATGAAGAAAATCGAGGAGGACCTGAAAGTGA 240
consensus_3713#1      CTAGCCCAGCAG-GAGGTGGAGTTTCGCAA-GAAGAAAATCGAGGAGGACCTGAAAGTGA 226
                      **** ******* ***************** *****************************

consensus_3713#0      GCAACATCGAGAACAAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCT 300
consensus_3713#1      GCAACATCGAGAACAAATTCGCCGCCCATTACGATGCGGTGGAGCAGCAGCTCAAAAGCT 286
                      ************************************************************

consensus_3713#0      CCACCATCGGGATTGGTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGG 360
consensus_3713#1      CCACCATCGGG-TTGGTCACCCTGGACGAGATGAAGGCCAAGCAGGAGGACATTGTCCGG 345
                      *********** ************************************************

consensus_3713#0      GAGCGGGAGAAAAAGCTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCA 420
consensus_3713#1      GAGCGGGAGAAAAAGCTGGCCCAAAAGAAGGAGGAAAAGGACAAGGAAAAGCTGAAGGCA 405
                      ************************************************************

consensus_3713#0      CTGGAAGCGAAGCTGGCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTT 480
consensus_3713#1      CTGGAAGCGAAGCTGGCGGAAAAGGATCGCCAGAAGCGACAGATACAGGCACTGTCCTTT 465
                      ************************************************************

consensus_3713#0      GATCCGGACGATGAACCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAG 540
consensus_3713#1      GATCCGGACGATGAACCCGATGGGGATGATGCTAATGATGGGGATGAGGGATCGGGGAAG 525
                      ************************************************************

consensus_3713#0      GAATCGGAAAAGGAGGATGTCAAGGAGGAGCTGACC-GTTGTTAAGCGGTCCTGGAAAGG 599
consensus_3713#1      GAATCGGAAAAGGAGGATGTCAAGGAGGAGCTGACCCGTTGTTAAGCGGTCCTGGAA-GG 584
                      ************************************ ******************** **

consensus_3713#0      AGCAGGGTACCGAGACGGGGGTGAAGAAGATTCGTAAANNACCCGGACGTCGATACCGTT 659
consensus_3713#1      AGCAGG-TACCGAGC--GGGGTGAAGAAGATTCGTAAAAA-CCCGGACGTCGATACG--T 638
                      ****** *******   *********************   ***************   *

consensus_3713#0      CGTTTCTGCCGGACCGGGGAGGCGTGAAGGAGCGGGGACAATTCGTTTGGCCGCGGAGGG 719
consensus_3713#1      CGTTTCTGCCGGA----------------------------------------------- 651
                      *************                                               

consensus_3713#0      AACTGCGCCAGGAATGGGGCCGATGAAGGCAGG 752
consensus_3713#1      ---------------------------------