cluster # 3716

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Anopheles gambiae
cluster # 3716 cluster # 3716 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3716#0 length = 670 sequences # 1

consensus_3716#1 length = 559 sequences # 1
consensus_3716#2 length = 303 sequences # 1

consensusID : consensus_3716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [ATCGCCCGAGGTTACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTCAGCCATGACTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATCAAGACGGTGACGATTGAGAAGAAGATCCCGGTGCCGTACACCGTCGAGAAGCACGTCCCGTACACGGTCGAGAAGAAGGTGCCGTACGAGGTGAAGGTCCCGATCCCGCAGCCCTACATCGTCGAGAAGAAGGTGCCGGTGCACTACAAGGAAGTGGTGAAATACCCAGTCCACGTCCCGGCTCCGTACACCGTCGAGAAGAAGGTGCCGTACGAGGTGAAGTACCCGGTCGACAAGCCGTACGAGGTGAAGGTACATGTCCCGCAGCCCTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTGCCGGTCCCGGTCCCGTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTTGAGGTGCCGTCCCCAAGCCGTACACCGTCATCAAGAAGGTGCCGTACGACGTGAGGTCCGGTCGACA]

[+] EMBL AL932727             [ATCGCCCGAGGTTACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTCAGCCATGACTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATCAAGACGGTGACGATTGAGAAGAAGATCCCGGTGCCGTACACCGTCGAGAAGCACGTCCCGTACACGGTCGAGAAGAAGGTGCCGTACGAGGTGAAGGTCCCGATCCCGCAGCCCTACATCGTCGAGAAGAAGGTGCCGGTGCACTACAAGGAAGTGGTGAAATACCCAGTCCACGTCCCGGCTCCGTACACCGTCGAGAAGAAGGTGCCGTACGAGGTGAAGTACCCGGTCGACAAGCCGTACGAGGTGAAGGTACATGTCCCGCAGCCCTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTGCCGGTCCCGGTCCCGTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTTGAGGTGCCGTCCCCAAGCCGTACACCGTCATCAAGAAGGTGCCGTACGACGTGAGGTCCGGTCGACA]




>consensus_3716#0
ATCGCCCGAGGTTACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCC
CTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAA
ACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTT
GGCGATTTCAGCCATGACTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATC
AAGACGGTGACGATTGAGAAGAAGATCCCGGTGCCGTACACCGTCGAGAAGCACGTCCCG
TACACGGTCGAGAAGAAGGTGCCGTACGAGGTGAAGGTCCCGATCCCGCAGCCCTACATC
GTCGAGAAGAAGGTGCCGGTGCACTACAAGGAAGTGGTGAAATACCCAGTCCACGTCCCG
GCTCCGTACACCGTCGAGAAGAAGGTGCCGTACGAGGTGAAGTACCCGGTCGACAAGCCG
TACGAGGTGAAGGTACATGTCCCGCAGCCCTACACCGTCGAGAAGAAGGTCCCGTACGAG
GTGAAGGTGCCGGTCCCGGTCCCGTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAG
GTTGAGGTGCCGTCCCCAAGCCGTACACCGTCATCAAGAAGGTGCCGTACGACGTGAGGT
CCGGTCGACA

consensusID : consensus_3716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [AGGCAGAATCGNCACGAGGTGTACTATACACTTTTTGCTCACAACTGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTTCAGCCATGGACTTCGGGTGGACACGGATTGAGCATTCACCCATCACCCACGGAAGCACATCAAAGAACGGGTGACGGATTGAGAAAGAAAGAATCCCCGGGTGCCCGGTAACAACCCGGTTCGGAAGGANAGGCAACCGGTTCCCGGGTTAACCAACGGGGTTCCCGAAGGAACAGCAAAACGGGNTTGACCCGGNTTAACCNGAAGGGGGATTGGGAACAGGGGTTTCGCCCGGAAATTCCCCCCGGCGAGGCGCCCCAGTTAGCCAATTTCGGTTCCGGCAACANAGACNGAAACGGGGTTGACACCGCGGGTTNCACACCTTTACCACAAGGGAAGCTTGAGGGGTTGAA]

[+] EMBL BX468690             [AGGCAGAATCGNCACGAGGTGTACTATACACTTTTTGCTCACAACTGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTTCAGCCATGGACTTCGGGTGGACACGGATTGAGCATTCACCCATCACCCACGGAAGCACATCAAAGAACGGGTGACGGATTGAGAAAGAAAGAATCCCCGGGTGCCCGGTAACAACCCGGTTCGGAAGGANAGGCAACCGGTTCCCGGGTTAACCAACGGGGTTCCCGAAGGAACAGCAAAACGGGNTTGACCCGGNTTAACCNGAAGGGGGATTGGGAACAGGGGTTTCGCCCGGAAATTCCCCCCGGCGAGGCGCCCCAGTTAGCCAATTTCGGTTCCGGCAACANAGACNGAAACGGGGTTGACACCGCGGGTTNCACACCTTTACCACAAGGGAAGCTTGAGGGGTTGAA]




>consensus_3716#1
AGGCAGAATCGNCACGAGGTGTACTATACACTTTTTGCTCACAACTGCGAATGATCATAG
TTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGG
ACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCG
GCCTGCACTCCTCCTTTGGCGATTTTCAGCCATGGACTTCGGGTGGACACGGATTGAGCA
TTCACCCATCACCCACGGAAGCACATCAAAGAACGGGTGACGGATTGAGAAAGAAAGAAT
CCCCGGGTGCCCGGTAACAACCCGGTTCGGAAGGANAGGCAACCGGTTCCCGGGTTAACC
AACGGGGTTCCCGAAGGAACAGCAAAACGGGNTTGACCCGGNTTAACCNGAAGGGGGATT
GGGAACAGGGGTTTCGCCCGGAAATTCCCCCCGGCGAGGCGCCCCAGTTAGCCAATTTCG
GTTCCGGCAACANAGACNGAAACGGGGTTGACACCGCGGGTTNCACACCTTTACCACAAG
GGAAGCTTGAGGGGTTGAA

consensusID : consensus_3716#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [CCGAGGTGTTTATACACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTCAGCCATGACTTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATCAAGACCGGTGACGAATTGAGAAAGAAAGATCCCGGTTGCCCGTACACCGTCCGAAGAAGCA]

[+] EMBL AL692891             [CCGAGGTGTTTATACACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTCAGCCATGACTTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATCAAGACCGGTGACGAATTGAGAAAGAAAGATCCCGGTTGCCCGTACACCGTCCGAAGAAGCA]




>consensus_3716#2
CCGAGGTGTTTATACACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTG
CCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGG
AAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGAGAAGCGCGGCCTGCACTCCTCCTT
TGGCGATTTCAGCCATGACTTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACA
TCAAGACCGGTGACGAATTGAGAAAGAAAGATCCCGGTTGCCCGTACACCGTCCGAAGAA
GCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3716#0      -------ATCGCC-CGAGGT--------TACTTTTTGCTCACAA-TGCGAATGATCATAG 43
consensus_3716#2      -----CCGAGGTG-TTTATA--------CACTTTTTGCTCACAA-TGCGAATGATCATAG 45
consensus_3716#1      AGGCAGAATCGNCACGAGGTGTACTATACACTTTTTGCTCACAACTGCGAATGATCATAG 60
                                *                  *************** ***************

consensus_3716#0      TTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGG 103
consensus_3716#2      TTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGG 105
consensus_3716#1      TTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGG 120
                      ************************************************************

consensus_3716#0      ACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCG 163
consensus_3716#2      ACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTG-AGAAGCGCG 164
consensus_3716#1      ACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCG 180
                      ************************************************** *********

consensus_3716#0      GCCTGCACTCCTCCTTTGGCGATTT-CAGCCATG-ACTT-CGGTGGACACGA--TGAGCA 218
consensus_3716#2      GCCTGCACTCCTCCTTTGGCGATTT-CAGCCATG-ACTTTCGGTGGACACGA--TGAGCA 220
consensus_3716#1      GCCTGCACTCCTCCTTTGGCGATTTTCAGCCATGGACTTCGGGTGGACACGGATTGAGCA 240
                      ************************* ******** ****  **********   ******

consensus_3716#0      TCA--CCATCACC-ACG--AGCACATCAAG--AC-GGTGACGA-TTGAGAAG--AAGATC 267
consensus_3716#2      TCA--CCATCACC-ACG--AGCACATCAAG--ACCGGTGACGAATTGAGAAAGAAAGATC 273
consensus_3716#1      TTCACCCATCACCCACGGAAGCACATCAAAGAACGGGTGACGGATTGAGAAAGAAAGAAT 300
                      *    ******** ***  **********   ** *******  *******   ****  

consensus_3716#0      CCGGTG--CCGTACACCGTC--GAGAAGCACGTCCCGTACACGGTCGAGAAGAAGGTGCC 323
consensus_3716#2      CCGGTTGCCCGTACACCGTCCGAAGAAGCA------------------------------ 303
consensus_3716#1      CCCCGG----GTGCCCGGT----AACAACCCGGTTCGGA-AGGANAGGCAACCGGTTCCC 351
                      **        ** * * **    *  * *                               

consensus_3716#0      GTACGAGGTGAAGGTCCCGATCCCGCAGCCCTACATCGTCGAGAAGAAGGTGCCGGTGCA 383
consensus_3716#2      ------------------------------------------------------------
consensus_3716#1      GGGTTAACCAACGGG---GTTCCCGAAGGA--ACAGCAAAACGGGNTTGACCCGGNTTAA 406
                                                                                  

consensus_3716#0      CTACAAGGAAGTGGTGAAATACCCAGTCCACGTCCCGGCTCCGTACACCGTCGAGAAGAA 443
consensus_3716#2      ------------------------------------------------------------
consensus_3716#1      CCNGAAGGGGGATTGGGAACAGGGGTTTCGC---CCGGAAATTCCCCCCGGCGAG----- 458
                                                                                  

consensus_3716#0      GGTGCCGTACGAGGTGAAGTACCCGGTCGACAAGCCGTACGAGGTGAAGGTACATGTCCC 503
consensus_3716#2      ------------------------------------------------------------
consensus_3716#1      -GCGCCCCAGTTAGCCAATTTCGGTTCCGGCAACANAGACNGAAACGGGGTTGACACCGC 517
                                                                                  

consensus_3716#0      GCAGCCCTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTGCCGGTCCCGGTCCC 563
consensus_3716#2      ------------------------------------------------------------
consensus_3716#1      G-GGTTNCACACCTTTACCACAAGGGAAGCTTGAGGGGTTGAA----------------- 559
                                                                                  

consensus_3716#0      GTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTTGAGGTGCCGTCCCCAAGCCG 623
consensus_3716#2      ------------------------------------------------------------
consensus_3716#1      ------------------------------------------------------------
                                                                                  

consensus_3716#0      TACACCGTCATCAAGAAGGTGCCGTACGACGTGAGGTCCGGTCGACA 670
consensus_3716#2      -----------------------------------------------
consensus_3716#1      -----------------------------------------------