cluster # 3724

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Anopheles gambiae
cluster # 3724 cluster # 3724 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3724#0 length = 927 sequences # 1

consensus_3724#1 length = 517 sequences # 1
consensus_3724#2 length = 516 sequences # 1

consensusID : consensus_3724#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 927
fasta sequence

                              [AGCCGAGAGGGAGCGTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGCTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGATAAAATACCTTGTACACTATGCCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCGATTCGCGAGCATCAACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTTTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAGGCGGTGGAAAAACCGAAAGACGAATCGTCCAGCGAGCCCGGCAGCTCGAAGGCGAAGAAACGCGGCCGAAGCGACACAAACTCATCGAACGTCGAGTCGGAAGATCAGTTCATATCGAAGGTGGAGGTGAAAATCAAAATTCCGGACGAGCTGAAGGTGTGGCTGGTGGACGACTGGGACGCAATTTCGCGCCAGAACAAGCTGCTCGAGCTGCCTTCTCCCTTTTTTTTTGTAGGG]

[+] EMBL CNS095HZ             [AGCCGAGAGGGAGCGTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGCTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGATAAAATACCTTGTACACTATGCCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCGATTCGCGAGCATCAACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTTTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAGGCGGTGGAAAAACCGAAAGACGAATCGTCCAGCGAGCCCGGCAGCTCGAAGGCGAAGAAACGCGGCCGAAGCGACACAAACTCATCGAACGTCGAGTCGGAAGATCAGTTCATATCGAAGGTGGAGGTGAAAATCAAAATTCCGGACGAGCTGAAGGTGTGGCTGGTGGACGACTGGGACGCAATTTCGCGCCAGAACAAGCTGCTCGAGCTGCCTTCTCCCTTTTTTTTTGTAGGG]




>consensus_3724#0
AGCCGAGAGGGAGCGTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAAT
CCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGC
TTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTT
CTGCGTTGTGCGATGATGAAGGAAAAGCAGATAAAATACCTTGTACACTATGCCGGCTGG
AACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAAC
CGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGC
AGCGATTCGCGAGCATCAACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTA
CAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACC
GGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACA
TCGGCTACCAGTGCGAGTTTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCC
TCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGC
AAGGATGTGAAATCTTCCGAAAGCAAGGAGGCGGTGGAAAAACCGAAAGACGAATCGTCC
AGCGAGCCCGGCAGCTCGAAGGCGAAGAAACGCGGCCGAAGCGACACAAACTCATCGAAC
GTCGAGTCGGAAGATCAGTTCATATCGAAGGTGGAGGTGAAAATCAAAATTCCGGACGAG
CTGAAGGTGTGGCTGGTGGACGACTGGGACGCAATTTCGCGCCAGAACAAGCTGCTCGAG
CTGCCTTCTCCCTTTTTTTTTGTAGGG

consensusID : consensus_3724#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [CCGCAGGTTNTGAGAGGGAGCGCTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGGTAAAATACCTTGTGCACTATGCCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGGTTACAGGGGC]

[+] EMBL AL692958             [CCGCAGGTTNTGAGAGGGAGCGCTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGGTAAAATACCTTGTGCACTATGCCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGGTTACAGGGGC]




>consensus_3724#1
CCGCAGGTTNTGAGAGGGAGCGCTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTC
AACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAA
GTTTAAGTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGC
AAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGGTAAAATACCTTGTGCACTATGC
CGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGA
AGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAA
GAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAA
GGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGC
GGTACAGTCCGTCACCACCACACCCGGTTACAGGGGC

consensusID : consensus_3724#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CGCATTCTGTTACGCAGCTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTGTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAG]

[+] EMBL BX623395             [CGCATTCTGTTACGCAGCTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTGTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAG]




>consensus_3724#2
CGCATTCTGTTACGCAGCTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAAC
GAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAAC
AAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGC
AAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACA
GCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACC
TCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTG
AAGACATCGGCTACCAGTGCGAGTGTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACC
TCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCC
GCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3724#0      -------AGCCGAGAGGGAGCG-TGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTC 52
consensus_3724#1      CCGCAGGTTNTGAGAGGGAGCGCTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTC 60
consensus_3724#2      ------------------------------------------------------------
                                                                                  

consensus_3724#0      AACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAA 112
consensus_3724#1      AACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAA 120
consensus_3724#2      ------------------------------------------------------------
                                                                                  

consensus_3724#0      GTTTAAGCTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAG 172
consensus_3724#1      GTTTAAG-TTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAG 179
consensus_3724#2      ------------------------------------------------------------
                                                                                  

consensus_3724#0      CAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGATAAAATACCTTGTACACTATG 232
consensus_3724#1      CAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGGTAAAATACCTTGTGCACTATG 239
consensus_3724#2      ----------------------------------------------------------CG 2
                                                                                 *

consensus_3724#0      CCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACG 292
consensus_3724#1      CCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACG 299
consensus_3724#2      CATTCTGTTACGCAG-CTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACG 61
                      *   ***  **  *  ********************************************

consensus_3724#0      AAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACA 352
consensus_3724#1      AAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACA 359
consensus_3724#2      AAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACA 121
                      ************************************************************

consensus_3724#0      AGAAGAGCAGCGATTCGCGAGCATCAACACCGTCGAAGGAAGTGACGAAAGAGAAAGACA 412
consensus_3724#1      AGAAGAGCAGCA--CGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGG 417
consensus_3724#2      AGAAGAGCAGCA--CGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGG 179
                      ***********       * * *  **  * * ** *    ***      *         

consensus_3724#0      CAGCGGTA-CAGTCCGTCACCA-CCACACCCGTTACAGGGGCTACAACACCGACGGGCAC 470
consensus_3724#1      CAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACAC 477
consensus_3724#2      CAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACAC 239
                      **  *  * *  * **  * ** *******    *  *  *  ** * *  **  * ***

consensus_3724#0      TACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTC 530
consensus_3724#1      -AGCGGTACAGTCCGT--CACCACCACACCCGGTT-----ACAGGGGC------------ 517
consensus_3724#2      -AGCGGTACAGTCCGT--CACCACCACACCCGTT------ACAGGGGCTACAACACCGAC 290
                       * *  *** *   **  *** ** ** ****        *****               

consensus_3724#0      CCTGAAGACATCGGCTACCAGTGCGAGTTTTTCTTCATCGCCCAGCTCCAGCTCCTCGTC 590
consensus_3724#1      ------------------------------------------------------------
consensus_3724#2      GGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCG 350
                                                                                  

consensus_3724#0      CACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCAC 650
consensus_3724#1      ------------------------------------------------------------
consensus_3724#2      ATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTGTTTCTTCATCGCCCAGCTCCAGCTC 410
                                                                                  

consensus_3724#0      CGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAGGCGGTGGAAAAACCGAAAGA 710
consensus_3724#1      ------------------------------------------------------------
consensus_3724#2      CTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCAC 470
                                                                                  

consensus_3724#0      CGAATCGTCCAGCGAGCCCGGCAGCTCGAAGGCGAAGAAACGCGGCCGAAGCGACACAAA 770
consensus_3724#1      ------------------------------------------------------------
consensus_3724#2      ATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAG-------------- 516
                                                                                  

consensus_3724#0      CTCATCGAACGTCGAGTCGGAAGATCAGTTCATATCGAAGGTGGAGGTGAAAATCAAAAT 830
consensus_3724#1      ------------------------------------------------------------
consensus_3724#2      ------------------------------------------------------------
                                                                                  

consensus_3724#0      TCCGGACGAGCTGAAGGTGTGGCTGGTGGACGACTGGGACGCAATTTCGCGCCAGAACAA 890
consensus_3724#1      ------------------------------------------------------------
consensus_3724#2      ------------------------------------------------------------
                                                                                  

consensus_3724#0      GCTGCTCGAGCTGCCTTCTCCCTTTTTTTTTGTAGGG 927
consensus_3724#1      -------------------------------------
consensus_3724#2      -------------------------------------