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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[AGAATCCCCGAGGTTTGTCGCTTGTGGAAGTGTTTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTTACGTGTTCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACAGTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCTGGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGTAACGCGCTGCTGCTTGTGCAATGTGACAATA]
[+] EMBL AL934852 [AGAATCCCCGAGGTTTGTCGCTTGTGGAAGTGTTTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTTACGTGTTCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACAGTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCTGGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGTAACGCGCTGCTGCTTGTGCAATGTGACAATA]
consensusID : consensus_3725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 510 fasta sequence
[ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGTTTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTT-TCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAG-CACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTCACCGACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGGAGCGAAGGGATGAAA]
[+] EMBL AL692978 [ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGTTTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTT TCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAG CACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTCACCGACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGGAGCGAAGGGATGAAA]
[+] EMBL BM605277 [ ccgGACGAATCCCGATGTTGG TTGCTGGCGTCCGCTTGTGGAAGTG TTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTAGCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAG ATTGCGCTCGTCCACTACGATCCCACC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3725#0 ----------------AGAATCCCCGAGGTTTGT-----------CGCTTGTGGAAGTGT 33
consensus_3725#1 ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGT 60
* * ***** *** * ***************
consensus_3725#0 TTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCA 93
consensus_3725#1 TTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCA 120
*** ****** * ******************************************
consensus_3725#0 TCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCA 153
consensus_3725#1 TCGAGCGTTTCT-GCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCA 179
************ ************************ **********************
consensus_3725#0 ATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCG 213
consensus_3725#1 ATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGC-ACAGCATTCCAAGCGAAGCCG 238
************************************** *********************
consensus_3725#0 ATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAG-ATT 272
consensus_3725#1 ATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATT 298
******************************************************** ***
consensus_3725#0 GCGCTCGTCCACTACGATCCCACCGATATGGACTTT-TACGTGTTCGTCAGTCTGCAGGA 331
consensus_3725#1 GCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGA 358
************************************ ******* ***************
consensus_3725#0 GTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGT 391
consensus_3725#1 GTCGCCGATCGATTTGCAGCAGAACGTGTTCACCG-ACCGGAGCTACACTTCTTCCGGGT 417
****************************** **** ************************
consensus_3725#0 GCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAA 451
consensus_3725#1 GCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAA 477
************************************************************
consensus_3725#0 TCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACA 511
consensus_3725#1 TCTGACGAACGATACCG-GAGCGAAGGGATGAAA-------------------------- 510
***************** ****************
consensus_3725#0 GTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCT 571
consensus_3725#1 ------------------------------------------------------------
consensus_3725#0 GGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGT 631
consensus_3725#1 ------------------------------------------------------------
consensus_3725#0 AACGCGCTGCTGCTTGTGCAATGTGACAATA 662
consensus_3725#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||