cluster # 3727

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3727 cluster # 3727 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3727#0 length = 723 sequences # 1

consensus_3727#1 length = 406 sequences # 2

consensusID : consensus_3727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence

                              [ATCTATCTAACGGTGATATTAGTTTGCCAGACCTACCTGCCACCGGGCAAGGACAGCAAAACAGCAACGCGAGATGATCTGACCTGCAAAATTACCTACTGCTCCACTGTAAATCCTGGCGGCTGGGCCCCAGCGACCGTGCTGCGCGCTATCTATAAGAAAGAATATCCAAAGTTCCTTAAGCGTTTCACCGGATACGTTGTTGATCAATGTAAAGCGAAGCCGATCATGTATTAGAATCATCGGCAACGGCACAGAAGTAGGTTCTTCGGTTGGTTTATGATGTGTTTTTTTTATTATTATTTTTAAGATTTAAGAAGGTATCTAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATCTTGGAAAGTGGGGTTAGGGTGGGTTTANGACTGGTCTGTGTCTACGTTTGTA]

[+] EMBL BX622069             [ATCTATCTAACGGTGATATTAGTTTGCCAGACCTACCTGCCACCGGGCAAGGACAGCAAAACAGCAACGCGAGATGATCTGACCTGCAAAATTACCTACTGCTCCACTGTAAATCCTGGCGGCTGGGCCCCAGCGACCGTGCTGCGCGCTATCTATAAGAAAGAATATCCAAAGTTCCTTAAGCGTTTCACCGGATACGTTGTTGATCAATGTAAAGCGAAGCCGATCATGTATTAGAATCATCGGCAACGGCACAGAAGTAGGTTCTTCGGTTGGTTTATGATGTGTTTTTTTTATTATTATTTTTAAGATTTAAGAAGGTATCTAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATCTTGGAAAGTGGGGTTAGGGTGGGTTTANGACTGGTCTGTGTCTACGTTTGTA]




>consensus_3727#0
ATCTATCTAACGGTGATATTAGTTTGCCAGACCTACCTGCCACCGGGCAAGGACAGCAAA
ACAGCAACGCGAGATGATCTGACCTGCAAAATTACCTACTGCTCCACTGTAAATCCTGGC
GGCTGGGCCCCAGCGACCGTGCTGCGCGCTATCTATAAGAAAGAATATCCAAAGTTCCTT
AAGCGTTTCACCGGATACGTTGTTGATCAATGTAAAGCGAAGCCGATCATGTATTAGAAT
CATCGGCAACGGCACAGAAGTAGGTTCTTCGGTTGGTTTATGATGTGTTTTTTTTATTAT
TATTTTTAAGATTTAAGAAGGTATCTAGATGTTGTTATATAGATATGGTGTTAGTGTGTG
GGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTG
CTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTA
GTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATA
GTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTG
CGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTG
TCGAACATATCTTGGAAAGTGGGGTTAGGGTGGGTTTANGACTGGTCTGTGTCTACGTTT
GTA

consensusID : consensus_3727#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence

                              [CCGCCCACGCGTCCGAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATCTTGGAAAGTGGGGTTAGGTTGGGTTTAGGACTGGTCTGTGTCTACG]

[+] EMBL BM605220             [CCGCCCACGCGTCCGAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATCTTGGAAAGTGGGGTTAGGTTGGGTTTAGGACTGGTCTGTGTCTACG]
[+] EMBL AL692988             [                                                        aggtTTACACACGGAAGTCACACG TCGATGCACTATTTTCCTACACTTCTTGCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAG                                                                                                                                                                                                                                            ]




>consensus_3727#1
CCGCCCACGCGTCCGAGATGTTGTTATATAGATATGGTGTTAGTGTGTGGGTGTGTATAC
TTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTTGCTGCAGTTTCT
CGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTTAGTTAAGTGGAT
AGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAATAGTTTCGGACCG
TTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATTGCGCGCAGTAGT
ATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCTGTCGAACATATC
TTGGAAAGTGGGGTTAGGTTGGGTTTAGGACTGGTCTGTGTCTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3727#0      ATCTATCTAACGGTGATATTAGTTTGCCAGACCTACCTGCCACCGGGCAAGGACAGCAAA 60
consensus_3727#1      ------------------------------------------------------------
                                                                                  

consensus_3727#0      ACAGCAACGCGAGATGATCTGACCTGCAAAATTACCTACTGCTCCACTGTAAATCCTGGC 120
consensus_3727#1      ------------------------------------------------------------
                                                                                  

consensus_3727#0      GGCTGGGCCCCAGCGACCGTGCTGCGCGCTATCTATAAGAAAGAATATCCAAAGTTCCTT 180
consensus_3727#1      ------------------------------------------------------------
                                                                                  

consensus_3727#0      AAGCGTTTCACCGGATACGTTGTTGATCAATGTAAAGCGAAGCCGATCATGTATTAGAAT 240
consensus_3727#1      ------------------------------------------------------------
                                                                                  

consensus_3727#0      CATCGGCAACGGCACAGAAGTAGGTTCTTCGGTTGGTTTATGATGTGTTTTTTTTATTAT 300
consensus_3727#1      ------------------------------------------------------------
                                                                                  

consensus_3727#0      TATTTTTAAGATTTAAGAAGGTATCT-AGATGTTGTTATATAGATATGGTGTTAGTGTGT 359
consensus_3727#1      ------------CCGCCCACGCGTCCGAGATGTTGTTATATAGATATGGTGTTAGTGTGT 48
                                        * *  **  *********************************

consensus_3727#0      GGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTT 419
consensus_3727#1      GGGTGTGTATACTTACACACGGAAGTCACACGTTCGATGCACTTTTTTCCTACACTTCTT 108
                      ************************************************************

consensus_3727#0      GCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTT 479
consensus_3727#1      GCTGCAGTTTCTCGGAGCTGCGCGGCTGTATGCGGGAAATGGGTAGGAAAAATCGTGTTT 168
                      ************************************************************

consensus_3727#0      AGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAAT 539
consensus_3727#1      AGTTAAGTGGATAGAGCAGACGATAGCAGAGAGTGTGCGTACATTTTTATCCCGGAAAAT 228
                      ************************************************************

consensus_3727#0      AGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATT 599
consensus_3727#1      AGTTTCGGACCGTTTGGTTACAAGCTAGAGAGGAAGTGTGTCTGGTAAAGCTTTCCCATT 288
                      ************************************************************

consensus_3727#0      GCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCT 659
consensus_3727#1      GCGCGCAGTAGTATATCGGATGGACTCTCCCGGCCGGCACTCGCAACACCGGTCGAATCT 348
                      ************************************************************

consensus_3727#0      GTCGAACATATCTTGGAAAGTGGGGTTAGGGTGGGTTTANGACTGGTCTGTGTCTACGTT 719
consensus_3727#1      GTCGAACATATCTTGGAAAGTGGGGTTAGGTTGGGTTTAGGACTGGTCTGTGTCTACG-- 406
                      ****************************** ******** ******************  

consensus_3727#0      TGTA 723
consensus_3727#1      ----