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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[CCCGAGTTAATTATTGGAAACAAAAATACTGCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGAGAGATAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAAACCATACACACAGACACATCACATTACTGTAGCACTTTTCCCCCAAACTAATTAACCTCTCGGTTTGTACTGGTGCCACGTTTTTGTGCACTTGTTCATGTGCACACGCCCTCTAGACTTTATGGAATGTGCTTCCGAGCGCAACAGGAATTCCCTAATTGCGGGGCAACACCAAGGCTAACGCGACACACAGGGGCTATCGGGCTGTGTATCTCGTGCTACTTCTCCGCCGTNNNACTANGCACTATCACAAACCAGCACAAATAGTATTCTCTTACCGCTCATCCCATCCCTCACACTCNAAAAATACCCCANGNCGCAGCGCAAAANCAAGCACACCGCGGCCTACTCACGACGGAGTACAGGTGGCAACGCAGTATATCATACGAANGGGGTAACCTACACTACCTATCTACTATNTACATACTACATACATCATATCATAANTCAATTGGCTCGCGCTGGCGTTGCGGCACGTNNNCATTCTCTANCTTAGC]
[+] EMBL AL693032 [CCCGAGTTAATTATTGGAAACAAAAATACTGCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGAGAGATAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAAACCATACACACAGACACATCACATTACTGTAGCACTTTTCCCCCAAACTAATTAACCTCTCGGTTTGTACTGGTGCCACGTTTTTGTGCACTTGTTCATGTGCACACGCCCTCTAGACTTTATGGAATGTGCTTCCGAGCGCAACAGGAATTCCCTAATTGCGGGGCAACACCAAGGCTAACGCGACACACAGGGGCTATCGGGCTGTGTATCTCGTGCTACTTCTCCGCCGTNNNACTANGCACTATCACAAACCAGCACAAATAGTATTCTCTTACCGCTCATCCCATCCCTCACACTCNAAAAATACCCCANGNCGCAGCGCAAAANCAAGCACACCGCGGCCTACTCACGACGGAGTACAGGTGGCAACGCAGTATATCATACGAANGGGGTAACCTACACTACCTATCTACTATNTACATACTACATACATCATATCATAANTCAATTGGCTCGCGCTGGCGTTGCGGCACGTNNNCATTCTCTANCTTAGC]
consensusID : consensus_3731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence
[CCGCCCACGCGTCCGCGGCCACCTGCTTTTTGATAGGCGCTGTGTGGAGCCGCGTGACTGAACTTTTGTGTGTAATAGTTAAACAAAATTTATTGGAAACAAAAATACTGCCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCTAAATCCCCCAAAATAATTAACCTCTCAGTTTGTTTGGTGCCACGTTTTTGTGCACTTGTTATGTGCACACGCCCGTAGACTTTTGGAATGTGCTTTTGAGGCAAAGGAATTCCCTAATTGGGGGAAAAAAGGCTAAGCGAAAAAGGGGTATTAGGTGTGTGTTTGTGTATTTCCGTTTGTAAATAGCACTATCACAACCAGCAAAGTGTATTCTTTAACGTTAATCCCATTTTTACATTAAAAATACCCACGCGCAGCGCAAAAAAGCACACCGCGGCTACTCACGACGGAGTAGA]
[+] EMBL BM620684 [CCGCCCACGCGTCCGCGGCCACCTGCTTTTTGATAGGCGCTGTGTGGAGCCGCGTGACTGAACTTTTGTGTGTAATAGTTAAACAAAATTTATTGGAAACAAAAATACTGCCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCTAAATCCCCCAAAATAATTAACCTCTCAGTTTGTTTGGTGCCACGTTTTTGTGCACTTGTTATGTGCACACGCCCGTAGACTTTTGGAATGTGCTTTTGAGGCAAAGGAATTCCCTAATTGGGGGAAAAAAGGCTAAGCGAAAAAGGGGTATTAGGTGTGTGTTTGTGTATTTCCGTTTGTAAATAGCACTATCACAACCAGCAAAGTGTATTCTTTAACGTTAATCCCATTTTTACATTAAAAATACCCACGCGCAGCGCAAAAAAGCACACCGCGGCTACTCACGACGGAGTAGA]
consensusID : consensus_3731#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CCGCCCACGCGTCCGTGGAAACAAAAATACTGCCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCTAAATCCCCCAAAATAATTAACCTCTCAGTTTGTTTGGTGCCACGTTTTTGTGCACTTGTTATGTGCACACGCCCGTAGACTTTTGGAATGTGCTTTTGAGGCAAAGGAATTCCCTAATTGGGGGAAAAAAGGCTAAGCGAAAAAGGGGTATTAGGTGTGTGTTTGTGTATTTCCGTTTGTAAATAGCACTATCACAACCAGCAAAGTGTATTCTTTAACGTTAATCCCATTTTTACATTAAAAATACCCACGCGCAGCGCAAAAAAGCACACCGCGGCTACTCACGACGGAGTAGAGTGGCAAGCAGTATATCATACGAAAGGGGTAACCTACA]
[+] EMBL BM639789 [CCGCCCACGCGTCCGTGGAAACAAAAATACTGCCTCCCATTAGCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACACACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAATGCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAATGTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCATAAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCTAAATCCCCCAAAATAATTAACCTCTCAGTTTGTTTGGTGCCACGTTTTTGTGCACTTGTTATGTGCACACGCCCGTAGACTTTTGGAATGTGCTTTTGAGGCAAAGGAATTCCCTAATTGGGGGAAAAAAGGCTAAGCGAAAAAGGGGTATTAGGTGTGTGTTTGTGTATTTCCGTTTGTAAATAGCACTATCACAACCAGCAAAGTGTATTCTTTAACGTTAATCCCATTTTTACATTAAAAATACCCACGCGCAGCGCAAAAAAGCACACCGCGGCTACTCACGACGGAGTAGAGTGGCAAGCAGTATATCATACGAAAGGGGTAACCTACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3731#1 CCGCCCACGCGTCCGCGGCCACCTGCTTTTTGATAGGCGCTGTGTGGAGCCGCGTGACTG 60
consensus_3731#2 ------------------------------------------------------------
consensus_3731#0 ------------------------------------------------------------
consensus_3731#1 AACTTTTGTGTGTAATAGTTAAACAAAATTTATTGGAAACAAAAATACTGCCTCCCATTA 120
consensus_3731#2 ------------------CCGCCCACGCGTCCGTGGAAACAAAAATACTGCCTCCCATTA 42
consensus_3731#0 -----------------CCCGAGTTAA--TTATTGGAAACAAAAATACTGC-TCCCATTA 40
* ****************** ********
consensus_3731#1 GCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACAC 180
consensus_3731#2 GCGAAAACGGATTTGGGGCGTTTCAGGGCCCAACAGAAACAGACACACCCACACATACAC 102
consensus_3731#0 GCGAAAACGGATTTGGGGCGTTTCAGG-CCCAACAGAAACAGACACACCCACACATACAC 99
*************************** ********************************
consensus_3731#1 ACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAAT 240
consensus_3731#2 ACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAAT 162
consensus_3731#0 ACCAACCAAATTGCGTTCAACGGAAACAATAATGAAATTGTGAGAGAAACTTTTCAAAAT 159
************************************************************
consensus_3731#1 GCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAAT 300
consensus_3731#2 GCGACGATGAGAACAGATAGAGAGCGAGGTAGAGTGTGTGTGGTTAGGCATACATTTAAT 222
consensus_3731#0 GCGACGATGAGAACAGATAGAGAGAGAGATAGAGTGTGTGTGGTTAGGCATACATTTAAT 219
************************ *** *******************************
consensus_3731#1 GTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCAT 360
consensus_3731#2 GTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCAT 282
consensus_3731#0 GTTGTACAGTCAGTATGTCGTGTCGCGTGGATGTAACCGTAAAGTAAGCTTAAGCATCAT 279
************************************************************
consensus_3731#1 AAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCT 420
consensus_3731#2 AAGGAAACCCATACACACAGACACATCACATTACTGTAGCACATTTCCCCGAAACTACCT 342
consensus_3731#0 AAGGAAAACCATACACACAGACACATCACATTACTGTAGCACTTTT-------------- 325
******* ********************************** ***
consensus_3731#1 AAATCCCCCAAAATAATTAACCTCTCAGTTTGT-TTGGTGCCACGTTTTTGTGCACTTGT 479
consensus_3731#2 AAATCCCCCAAAATAATTAACCTCTCAGTTTGT-TTGGTGCCACGTTTTTGTGCACTTGT 401
consensus_3731#0 ----CCCCCAAACTAATTAACCTCTCGGTTTGTACTGGTGCCACGTTTTTGTGCACTTGT 381
******** ************* ****** *************************
consensus_3731#1 T-ATGTGCACACGCCCG-TAGACTTT-TGGAATGTGCTTTTGAG-GCAA-AGGAATTCCC 534
consensus_3731#2 T-ATGTGCACACGCCCG-TAGACTTT-TGGAATGTGCTTTTGAG-GCAA-AGGAATTCCC 456
consensus_3731#0 TCATGTGCACACGCCCTCTAGACTTTATGGAATGTGCTTCCGAGCGCAACAGGAATTCCC 441
* ************** ******** ************ *** **** **********
consensus_3731#1 TAATTGGGGGAAAA----AAGGCTAA-GCGAAA---AAGGGGTATTAGG-TGTGTGTTTG 585
consensus_3731#2 TAATTGGGGGAAAA----AAGGCTAA-GCGAAA---AAGGGGTATTAGG-TGTGTGTTTG 507
consensus_3731#0 TAATTGCGGGGCAACACCAAGGCTAACGCGACACACAGGGGCTATCGGGCTGTGTATCTC 501
****** *** ** ******** **** * * *** *** ** ***** * *
consensus_3731#1 ----TGTATTTCCGTTTGTAAAT--AGCACTATCACAA-CCAGCA--AAGTGTATTCT-T 635
consensus_3731#2 ----TGTATTTCCGTTTGTAAAT--AGCACTATCACAA-CCAGCA--AAGTGTATTCT-T 557
consensus_3731#0 GTGCTACTTCTCCGCCGTNNNACTANGCACTATCACAAACCAGCACAAATAGTATTCTCT 561
* * **** * ************ ****** ** ******* *
consensus_3731#1 TAACGTTAATCCCATTTTT---ACATTAAAAATACCC--ACGCGCAGCGCAAAAA--AGC 688
consensus_3731#2 TAACGTTAATCCCATTTTT---ACATTAAAAATACCC--ACGCGCAGCGCAAAAA--AGC 610
consensus_3731#0 TACCGCTCATCCCATCCCTCACACTCNAAAAATACCCCANGNCGCAGCGCAAAANCAAGC 621
** ** * ******* * ** ********** ************ ***
consensus_3731#1 ACACCGCGGC-TACTCACGACGGAGTAGA------------------------------- 716
consensus_3731#2 ACACCGCGGC-TACTCACGACGGAGTAGAGTGGCAAGCAGTATATCATACGAAAGGGGTA 669
consensus_3731#0 ACACCGCGGCCTACTCACGACGGAGTACAGGTGGCAACGCAGTATATCATACGAANGGGG 681
********** **************** *
consensus_3731#1 ------------------------------------------------------------
consensus_3731#2 ACCTACA----------------------------------------------------- 676
consensus_3731#0 TAACCTACACTACCTATCTACTATNTACATACTACATACATCATATCATAANTCAATTGG 741
consensus_3731#1 ------------------------------------------
consensus_3731#2 ------------------------------------------
consensus_3731#0 CTCGCGCTGGCGTTGCGGCACGTNNNCATTCTCTANCTTAGC 783
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||