cluster # 3735

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3735 cluster # 3735 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3735#0 length = 609 sequences # 1

consensus_3735#1 length = 515 sequences # 1
consensus_3735#2 length = 385 sequences # 1

consensusID : consensus_3735#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [CCGAGTTAGCGTAGCGTTTGATCCAGTTTGACGCAACGCAAGTCCGTGGTGTGCAGTTTTCAACGCGAAAGGATTTTAGTGAAGAAAAAGGTGAAGTACAGTTTTGATTTGGATTAACCTTCGTCATATGCTTAGAAGTACACTTTCCTGAGATTCTGCAACAAGTTTCTCACCTGTTCTTGCCGTTCTTATCAGCACACTATCGCCAACTATTGCGTACCCCGAGGCCGGCCGGTGCGCGTGTTTNTGGTGTTCACGCGAGTTCGTACCGCAACACAATCGAGCAGCGACAGCAAGCAGCAGGGCNAGTANAACTGACACGCNACAGCTGACTGGANGNGACGGAATTAGCACCGGAGNCAGCAGCTTCCAGCGGCAGCGTGAACAGATGAACTACNTGCGGCGNGCANACGAACTATCTCTCGGCCAGCAAAGGCCACGCTGCGCCTCATCGCACACTGCTGCTCACGCCAACCGACCGAAACTGTGGCATCGCCAGCTATCTGCGCCAGCTCGACGCGTCGNGCATCGATGATATGGGAGGCAAATACAAGCGGACCGGCACACTCTCACGCACGCACTCCAGCTGCTGCACACTCAGCCTTGCAG]

[+] EMBL AL693053             [CCGAGTTAGCGTAGCGTTTGATCCAGTTTGACGCAACGCAAGTCCGTGGTGTGCAGTTTTCAACGCGAAAGGATTTTAGTGAAGAAAAAGGTGAAGTACAGTTTTGATTTGGATTAACCTTCGTCATATGCTTAGAAGTACACTTTCCTGAGATTCTGCAACAAGTTTCTCACCTGTTCTTGCCGTTCTTATCAGCACACTATCGCCAACTATTGCGTACCCCGAGGCCGGCCGGTGCGCGTGTTTNTGGTGTTCACGCGAGTTCGTACCGCAACACAATCGAGCAGCGACAGCAAGCAGCAGGGCNAGTANAACTGACACGCNACAGCTGACTGGANGNGACGGAATTAGCACCGGAGNCAGCAGCTTCCAGCGGCAGCGTGAACAGATGAACTACNTGCGGCGNGCANACGAACTATCTCTCGGCCAGCAAAGGCCACGCTGCGCCTCATCGCACACTGCTGCTCACGCCAACCGACCGAAACTGTGGCATCGCCAGCTATCTGCGCCAGCTCGACGCGTCGNGCATCGATGATATGGGAGGCAAATACAAGCGGACCGGCACACTCTCACGCACGCACTCCAGCTGCTGCACACTCAGCCTTGCAG]




>consensus_3735#0
CCGAGTTAGCGTAGCGTTTGATCCAGTTTGACGCAACGCAAGTCCGTGGTGTGCAGTTTT
CAACGCGAAAGGATTTTAGTGAAGAAAAAGGTGAAGTACAGTTTTGATTTGGATTAACCT
TCGTCATATGCTTAGAAGTACACTTTCCTGAGATTCTGCAACAAGTTTCTCACCTGTTCT
TGCCGTTCTTATCAGCACACTATCGCCAACTATTGCGTACCCCGAGGCCGGCCGGTGCGC
GTGTTTNTGGTGTTCACGCGAGTTCGTACCGCAACACAATCGAGCAGCGACAGCAAGCAG
CAGGGCNAGTANAACTGACACGCNACAGCTGACTGGANGNGACGGAATTAGCACCGGAGN
CAGCAGCTTCCAGCGGCAGCGTGAACAGATGAACTACNTGCGGCGNGCANACGAACTATC
TCTCGGCCAGCAAAGGCCACGCTGCGCCTCATCGCACACTGCTGCTCACGCCAACCGACC
GAAACTGTGGCATCGCCAGCTATCTGCGCCAGCTCGACGCGTCGNGCATCGATGATATGG
GAGGCAAATACAAGCGGACCGGCACACTCTCACGCACGCACTCCAGCTGCTGCACACTCA
GCCTTGCAG

consensusID : consensus_3735#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [CCGCGGTGTGCATTTTCACGCGAAAGGATTTTGGTGAAGAAAAAGCACACTATCGCCAACTATTGCGTACCCCAGGCCGGCCGGTGCGCGTGTTTTGGTGTTCACGCGAGTTCGTACCGCAACACAATCGAGCAGCACAGTAAGCAGCCGGGCAGGTAAATGAACGCAACAGAGATGGAGGAGGAATCAGCCCCGGAGCAGCAACTTCCAGCGGAGGTGAAAGATGAATTTGGGCGGAAGCGAATTTTCGGCCAGCAAGACACGCTGCGCCTCATCGAATGTGTTCGCCAACGGACCGAAACTGTGGCATCGCCAGTATCTGCGCAGTCGAGCGTCGGGCATCGATGATTGGGAGGACATTCAGCGTACGGAATTCAGCACGATCAGTGTGAATCAGTTGCGCGTGCGCTGGGAAAACACTGCGCGATTGCTTCCGCCGGGAGGCTAAAACGTATAGAGGATGGCACGATCCCAGCAATCCGCTGGCCACTGTACGACCACATGCAGTTCCTGCA]

[+] EMBL CNS099A4             [CCGCGGTGTGCATTTTCACGCGAAAGGATTTTGGTGAAGAAAAAGCACACTATCGCCAACTATTGCGTACCCCAGGCCGGCCGGTGCGCGTGTTTTGGTGTTCACGCGAGTTCGTACCGCAACACAATCGAGCAGCACAGTAAGCAGCCGGGCAGGTAAATGAACGCAACAGAGATGGAGGAGGAATCAGCCCCGGAGCAGCAACTTCCAGCGGAGGTGAAAGATGAATTTGGGCGGAAGCGAATTTTCGGCCAGCAAGACACGCTGCGCCTCATCGAATGTGTTCGCCAACGGACCGAAACTGTGGCATCGCCAGTATCTGCGCAGTCGAGCGTCGGGCATCGATGATTGGGAGGACATTCAGCGTACGGAATTCAGCACGATCAGTGTGAATCAGTTGCGCGTGCGCTGGGAAAACACTGCGCGATTGCTTCCGCCGGGAGGCTAAAACGTATAGAGGATGGCACGATCCCAGCAATCCGCTGGCCACTGTACGACCACATGCAGTTCCTGCA]




>consensus_3735#1
CCGCGGTGTGCATTTTCACGCGAAAGGATTTTGGTGAAGAAAAAGCACACTATCGCCAAC
TATTGCGTACCCCAGGCCGGCCGGTGCGCGTGTTTTGGTGTTCACGCGAGTTCGTACCGC
AACACAATCGAGCAGCACAGTAAGCAGCCGGGCAGGTAAATGAACGCAACAGAGATGGAG
GAGGAATCAGCCCCGGAGCAGCAACTTCCAGCGGAGGTGAAAGATGAATTTGGGCGGAAG
CGAATTTTCGGCCAGCAAGACACGCTGCGCCTCATCGAATGTGTTCGCCAACGGACCGAA
ACTGTGGCATCGCCAGTATCTGCGCAGTCGAGCGTCGGGCATCGATGATTGGGAGGACAT
TCAGCGTACGGAATTCAGCACGATCAGTGTGAATCAGTTGCGCGTGCGCTGGGAAAACAC
TGCGCGATTGCTTCCGCCGGGAGGCTAAAACGTATAGAGGATGGCACGATCCCAGCAATC
CGCTGGCCACTGTACGACCACATGCAGTTCCTGCA

consensusID : consensus_3735#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [AGCGGCGGTGTGCAATTTATCAACGCGAAAGAGATTTTGGTGAAGAAAAAGGTGAAGTACAGTTTTGATTTGGATTTACCTTCGTCATTGCTTAGCAGTACACTTTCCGAGTTAGTACCAAACACAACTAATTCGTTTACGCACACACAAGAAAAGCGCTCCGAATTCGCATGTTCTGCAACAAGTTTCTCACCTGTTCTTGCCGTTCTTATCAGCACACTATCGCCAACGATTGCGTACCCCAGACCGACCGGTGCGCGTGTTTTGGTGTTCACGCGAGTTCGTACCGCAACACAATCGAGCAGCACAGCAAGCAGCCGGGGGTTGTTGCCTCGCAGGTAAAAGAACGCAACAGAGATGGAGGAGGAATCTGTCCCGGAGCAGC]

[+] EMBL CNS08Z7O             [AGCGGCGGTGTGCAATTTATCAACGCGAAAGAGATTTTGGTGAAGAAAAAGGTGAAGTACAGTTTTGATTTGGATTTACCTTCGTCATTGCTTAGCAGTACACTTTCCGAGTTAGTACCAAACACAACTAATTCGTTTACGCACACACAAGAAAAGCGCTCCGAATTCGCATGTTCTGCAACAAGTTTCTCACCTGTTCTTGCCGTTCTTATCAGCACACTATCGCCAACGATTGCGTACCCCAGACCGACCGGTGCGCGTGTTTTGGTGTTCACGCGAGTTCGTACCGCAACACAATCGAGCAGCACAGCAAGCAGCCGGGGGTTGTTGCCTCGCAGGTAAAAGAACGCAACAGAGATGGAGGAGGAATCTGTCCCGGAGCAGC]




>consensus_3735#2
AGCGGCGGTGTGCAATTTATCAACGCGAAAGAGATTTTGGTGAAGAAAAAGGTGAAGTAC
AGTTTTGATTTGGATTTACCTTCGTCATTGCTTAGCAGTACACTTTCCGAGTTAGTACCA
AACACAACTAATTCGTTTACGCACACACAAGAAAAGCGCTCCGAATTCGCATGTTCTGCA
ACAAGTTTCTCACCTGTTCTTGCCGTTCTTATCAGCACACTATCGCCAACGATTGCGTAC
CCCAGACCGACCGGTGCGCGTGTTTTGGTGTTCACGCGAGTTCGTACCGCAACACAATCG
AGCAGCACAGCAAGCAGCCGGGGGTTGTTGCCTCGCAGGTAAAAGAACGCAACAGAGATG
GAGGAGGAATCTGTCCCGGAGCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3735#0      CCGAGTTAGCGTAGCGTTTGATCCAGTTTGACGCAACGCAAGTCCGTGGTGTGCAGTTT- 59
consensus_3735#2      -----------------------------------------AGCGGCGGTGTGCAATTTA 19
consensus_3735#1      -------------------------------------------CCGCGGTGTGCATTTT- 16
                                                                 * * ******** *** 

consensus_3735#0      TCAACGCGAAAG-GATTTTAGTGAAGAAAAAG---------GTGAAGTACAGTTTTGATT 109
consensus_3735#2      TCAACGCGAAAGAGATTTTGGTGAAGAAAAAG---------GTGAAGTACAGTTTTGATT 70
consensus_3735#1      --CACGCGAAAG-GATTTTGGTGAAGAAAAAGCACACTATCGCCAACTATTGCGT-ACCC 72
                         ********* ****** ************         *  ** **  *  *     

consensus_3735#0      TGGATTAACCTTCGTCATATGCTTAGAAGTACACTT---TCC------------------ 148
consensus_3735#2      TGGATTTACCTTCGTCAT-TGCTTAGCAGTACACTT---TCCGAGTTAGTACCAAACACA 126
consensus_3735#1      CAGGCCGGCCGGTG-CGCGTGTTTTGGTGTTCACGCGAGTTCGTACCGCAACACAATCGA 131
                        *     **   * *   ** ** *  ** ***     * *                  

consensus_3735#0      ---------------------TGAGA---------------------TTCTGCAACAAGT 166
consensus_3735#2      ACTAATTCGTTTACGCACACACAAGAAAAGCGCTCCGAATTCGCATGTTCTGCAACAAGT 186
consensus_3735#1      GCAGCACAGTAAGCAGCCGGGCAGGTAAATGAACGCAACAGAGATGGAGGAGGAATCAGC 191
                                              *                          * **  ** 

consensus_3735#0      TTCTCACCTGTTCTTGCCGTTCTTATCAGCACACTATCGCCAACTATTGCGTACCCCGAG 226
consensus_3735#2      TTCTCACCTGTTCTTGCCGTTCTTATCAGCACACTATCGCCAACGATTGCGTACCCC-AG 245
consensus_3735#1      CCCGGAGCAGCAACTTCCAGCGGAGGTGAAAGATGAATTTGGGCGGAAGCGAATTTTCGG 251
                        *  * * *    * **            * *  *       *    *** *      *

consensus_3735#0      GCCGGCCGGTGCGC-GTGTTTNT-----GGTGTTCAC--GCGAGTTCGTACCGCAACACA 278
consensus_3735#2      ACCGACCGGTGCGC-GTGTTTT------GGTGTTCAC--GCGAGTTCGTACCGCAACACA 296
consensus_3735#1      CCAGCAAGACACGCTGCGCCTCATCGAATGTGTTCGCCAACGGACCGAAACTGTGGCATC 311
                       * *   *   *** * *  *        ****** *   **       ** *   **  

consensus_3735#0      ATCG--AGCAGCGACAGCAAGCAGCAGGGCNAGTANAACTGACACGCNA--CAGCTGACT 334
consensus_3735#2      ATCG--AGCAGC-ACAGCAAGCAGCCGGG-------GGTTGTTGCCTCG--CAGGTAAAA 344
consensus_3735#1      GCCAGTATCTGC-GCAGTCGAGCGTCGGGCATCGATGATTGGGAGGACATTCAGCGTACG 370
                        *   * * **  ***      *  ***          **          ***   *  

consensus_3735#0      GGANGNGACGGAATTAGCACCGG--AGNCAGCAGCTTCCAGCGGCAGCGTGAACAGATGA 392
consensus_3735#2      GAACGCAACAGAGATGGAGGAGG--AATCTG-----TCCCGGAGCAGC------------ 385
consensus_3735#1      GAATTCAGCACGATCAGTGTGAATCAGTTGCGCGTGCGCTGGGAAAACACTGCGCGATTG 430
                      * *     *       *        *            * *    * *            

consensus_3735#0      ACTACNTGCGGCGNGCANACGAACTATCTCTCGGCCAGCAAAGGCCACGCTGCGCCTCAT 452
consensus_3735#2      ------------------------------------------------------------
consensus_3735#1      CTTCCGCCGGGAGGCTAAAACGTATAGAGGATGGCACGATCCCAGCAATCCGCTGGCCAC 490
                                                                                  

consensus_3735#0      CGCACACTGCTGCTCACGCCAACCGACCGAAACTGTGGCATCGCCAGCTATCTGCGCCAG 512
consensus_3735#2      ------------------------------------------------------------
consensus_3735#1      TGTACGACCACATGCAGTTCCTGCA----------------------------------- 515
                                                                                  

consensus_3735#0      CTCGACGCGTCGNGCATCGATGATATGGGAGGCAAATACAAGCGGACCGGCACACTCTCA 572
consensus_3735#2      ------------------------------------------------------------
consensus_3735#1      ------------------------------------------------------------
                                                                                  

consensus_3735#0      CGCACGCACTCCAGCTGCTGCACACTCAGCCTTGCAG 609
consensus_3735#2      -------------------------------------
consensus_3735#1      -------------------------------------