cluster # 3746

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Anopheles gambiae
cluster # 3746 cluster # 3746 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3746#0 length = 543 sequences # 2

consensus_3746#1 length = 286 sequences # 1

consensusID : consensus_3746#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 543
fasta sequence

                              [ACTAATACTAATAGAAGGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAGGAAAAACTCACAACAGAGAAACACACTAGAGAAGAAAACAAAAATTAAGAACAACACACACGGTAGCAAAGCAAAGAGCGTGGAAGAGAGCTTGGATGGATTGGTTTTGTGCCTAAGGGAGGATTTTTTGTTGTAAAAGAGTTAGAAAGCTTTCGTTTTTACACTGTCAGTGCGTTCAAAATTGCATAACAAGAAAAGGATCTAGATATAGAAGCCATGACTCTAAGCAGACTTAAATAGAGTATAGAAAGAACAAACAGGAAGAAG--AAAAAAAACAAACCATGAACAGAAACAGTTAGAAGATTGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATTACTTAAAAGCGTATTAAGTGAAAGAGGGAGATAGAGAGAGAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAAGAAATAGTAAAAGCGAAAGCATA]

[+] EMBL BM607256             [ACTAATACTAATAGAAGGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAGGAAAAACTCACAACAGAGAAACACACTAGAGAAGAAAACAAAAATTAAGAACAACACACACGGTAGCAAAGCAAAGAGCGTGGAAGAGAGCTTGGATGGATTGGTTTTGTGCCTAAGGGAGGATTTTTTGTTGTAAAAGAGTTAGAAAGCTTTCGTTTTTACACTGTCAGTGCGTTCAAAATTGCATAACAAGAAAAGGATCTAGATATAGAAGCCATGACTCTAAGCAGACTTAAATAGAGTATAGAAAGAACAAACAGGAAGAAG  AAAAAAAACAAACCATGAACAGAAACAGTTAGAAGATTGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATTACTTAAAAGCGTATTAAGTGAAAGAGGGAGATAGAGAGAGAGAGAGAGAGGTCTCCGAGTAAGACCACAG                                                                       ]
[+] EMBL BX620235             [                GGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAGGAAAAACTCACAACAGAGAAACACACTAGAGAAGAAAACAAAAATTAAGAACAACACNCACGGNAGCAAAGCAAAGAGCGTGGAAGAGAACTTGAATGGATTGGTTCTGTGCCTAGGGGAGGATTTTTTGTTGTAAAAGAGTTAGAAAACATTCGTTTTTACACTGTCAGTGCGTTCAAAATTGCATAACAAGAAAAGGATCTAGATGTAGAAG CATGACTCTAAGCAGACTTAAATAGAGTATAGAAAGAACAAACAGGAAGAAGAAAAAAAAAACAAACCATGAACAGAAACAGTTAGAAGATAGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATAACTTAAAAGCGTATTAAGTGAAAGGGAGAGAGAGAGCGATAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAAGAAATAGTAAAAGCGAAAGCATA]




>consensus_3746#0
ACTAATACTAATAGAAGGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAG
GAAAAACTCACAACAGAGAAACACACTAGAGAAGAAAACAAAAATTAAGAACAACACACA
CGGTAGCAAAGCAAAGAGCGTGGAAGAGAGCTTGGATGGATTGGTTTTGTGCCTAAGGGA
GGATTTTTTGTTGTAAAAGAGTTAGAAAGCTTTCGTTTTTACACTGTCAGTGCGTTCAAA
ATTGCATAACAAGAAAAGGATCTAGATATAGAAGCCATGACTCTAAGCAGACTTAAATAG
AGTATAGAAAGAACAAACAGGAAGAAGAAAAAAAACAAACCATGAACAGAAACAGTTAGA
AGATTGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATTACTTAAAAGCGTATTAAG
TGAAAGAGGGAGATAGAGAGAGAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAA
GAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAAGAAATAGTAAAAGCGAAAGC
ATA

consensusID : consensus_3746#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [TAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAGGGAGAGAGAGAGAGGAGATAAAAGATGAAAAAGAAAGAGCAAAGGCATAGCTAATAGTGTGAAGCAATCTTTTCACTTCTAAATTTTACCTTGTTATAAACAACATGCTGCGGGGCATGTGACCGGCCCCACAAAGCGAATGTGGTGAATGTGGCGTCAGAGGCAAACGCAAAGCGCAAAACTTTCGAAAAGCACTTAAACAATTCG]

[+] EMBL BX618979             [TAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAGGGAGAGAGAGAGAGGAGATAAAAGATGAAAAAGAAAGAGCAAAGGCATAGCTAATAGTGTGAAGCAATCTTTTCACTTCTAAATTTTACCTTGTTATAAACAACATGCTGCGGGGCATGTGACCGGCCCCACAAAGCGAATGTGGTGAATGTGGCGTCAGAGGCAAACGCAAAGCGCAAAACTTTCGAAAAGCACTTAAACAATTCG]




>consensus_3746#1
TAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTA
AAAGCACAGCAAGAGAGAGGGAGAGAGAGAGAGGAGATAAAAGATGAAAAAGAAAGAGCA
AAGGCATAGCTAATAGTGTGAAGCAATCTTTTCACTTCTAAATTTTACCTTGTTATAAAC
AACATGCTGCGGGGCATGTGACCGGCCCCACAAAGCGAATGTGGTGAATGTGGCGTCAGA
GGCAAACGCAAAGCGCAAAACTTTCGAAAAGCACTTAAACAATTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3746#0      ACTAATACTAATAGAAGGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAG 60
consensus_3746#1      --------------TAGAGAGAGAGGTCTCCGAGTAA-GACCACAGAAGAAGAAGAAAAA 45
                                     **    * **  *  * ** ** **  ** *** ** ** * ** 

consensus_3746#0      GAAAAACTCACAACAGAGAAACA-CACTAGAGAAGAAAACAAAAATTAAGAACAACACAC 119
consensus_3746#1      ACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAGGGAGAGAGAGAGAGGAGATAAAAGAT 105
                        *  *   *    * *   *** **  ***** * * * * * *      * ** * * 

consensus_3746#0      ACGGTAGCAAAGCAAAGAGCGTGGAAGAGAGCTTGGATGGATTGGTTTTGTGCCTAAGGG 179
consensus_3746#1      GAAAAAGAAAGAGCAAAGGCATAGCTAATAGTGTGAA-GCAATCTTTTCACTTCTAAATT 164
                           ** **    **  ** * *   * **  ** * * * *  ***     ****   

consensus_3746#0      AGGATTTTTTGTTGTAAAAGAGTTAGAAAGCTT----TCGTTTTTACACTGTCAGTGCGT 235
consensus_3746#1      TTACCTTGTTATAAACAACATGCTGCGGGGCATGTGACCGGCCCCACAAAGCGAATGTGG 224
                           ** ** *    **   * *     ** *     **     ***  *  * ** * 

consensus_3746#0      TCAAAATTGCATAACAAGAAAAGGATCTAGATATAGAAGCCATGACTCTAAGCAGACTTA 295
consensus_3746#1      TGAATGTGGCGTCAGAGGCAAACG--CAAAGCGCAAAACTT-----TCGAAAAGCACTTA 277
                      * **  * ** * * * * *** *  * *     * **        ** **    *****

consensus_3746#0      AATAGAGTATAGAAAGAACAAACAGGAAGAAGAAAAAAAACAAACCATGAACAGAAACAG 355
consensus_3746#1      AACAATTCG--------------------------------------------------- 286
                      ** *                                                        

consensus_3746#0      TTAGAAGATTGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATTACTTAAAAGCGTA 415
consensus_3746#1      ------------------------------------------------------------
                                                                                  

consensus_3746#0      TTAAGTGAAAGAGGGAGATAGAGAGAGAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAG 475
consensus_3746#1      ------------------------------------------------------------
                                                                                  

consensus_3746#0      AAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAAGAAATAGTAAAAGCG 535
consensus_3746#1      ------------------------------------------------------------
                                                                                  

consensus_3746#0      AAAGCATA 543
consensus_3746#1      --------