cluster # 3749

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Anopheles gambiae
cluster # 3749 cluster # 3749 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3749#0 length = 699 sequences # 1

consensus_3749#1 length = 605 sequences # 1
consensus_3749#2 length = 578 sequences # 1

consensusID : consensus_3749#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence

                              [CCGGGGCACGGCGGACAGTGCTGCCGAGCATCAGTCCCTGCACGACAGCGAGCTCAAGATGAAGATCCTGCACATTGAGGTGTTGCAGGAAACGATCCGCAACCTGCAGACCCAGCTGCTCGAAAACAAAGCCAAAGAGACGGAACGCCAGAACCGCATCTGCGAGCTGGAGGACGAGCTGAAGGATGCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGCGGCCGCATCCAGTGCCGCGAGCGTATCGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAAGAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGCCGGTGGAAATGGTAAGCAAAGCGACGGAAACGGCCGCTGCCGATGATGGGCCGACGGTGGTGCCGAACGAGCGGGAAGCCAAAATGCTTGCCTTCGCCTCAACGTTTCTTATGATCAACCCGCACGGTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGTTATGTGAACGAGATGAAGCCAAAGGAGCTGGAGGATATGTTTGCCCGCTACCGGCAGCTGTTCGAGCGGTGCAATGCACCGGCTAGTGGCGAACGGCAGGTGCCGGGCGACGGGCAGAATGCCAGCAGTATCCCATCTAGTCCCTGCTATAGATTTATTGCCCACACGGCACCCGCAGTACAGTAAAGCAA]

[+] EMBL BX617787             [CCGGGGCACGGCGGACAGTGCTGCCGAGCATCAGTCCCTGCACGACAGCGAGCTCAAGATGAAGATCCTGCACATTGAGGTGTTGCAGGAAACGATCCGCAACCTGCAGACCCAGCTGCTCGAAAACAAAGCCAAAGAGACGGAACGCCAGAACCGCATCTGCGAGCTGGAGGACGAGCTGAAGGATGCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGCGGCCGCATCCAGTGCCGCGAGCGTATCGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAAGAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGCCGGTGGAAATGGTAAGCAAAGCGACGGAAACGGCCGCTGCCGATGATGGGCCGACGGTGGTGCCGAACGAGCGGGAAGCCAAAATGCTTGCCTTCGCCTCAACGTTTCTTATGATCAACCCGCACGGTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGTTATGTGAACGAGATGAAGCCAAAGGAGCTGGAGGATATGTTTGCCCGCTACCGGCAGCTGTTCGAGCGGTGCAATGCACCGGCTAGTGGCGAACGGCAGGTGCCGGGCGACGGGCAGAATGCCAGCAGTATCCCATCTAGTCCCTGCTATAGATTTATTGCCCACACGGCACCCGCAGTACAGTAAAGCAA]




>consensus_3749#0
CCGGGGCACGGCGGACAGTGCTGCCGAGCATCAGTCCCTGCACGACAGCGAGCTCAAGAT
GAAGATCCTGCACATTGAGGTGTTGCAGGAAACGATCCGCAACCTGCAGACCCAGCTGCT
CGAAAACAAAGCCAAAGAGACGGAACGCCAGAACCGCATCTGCGAGCTGGAGGACGAGCT
GAAGGATGCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGCGGC
CGCATCCAGTGCCGCGAGCGTATCGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAAGA
GTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGCCGGTGGAAATGGTAAG
CAAAGCGACGGAAACGGCCGCTGCCGATGATGGGCCGACGGTGGTGCCGAACGAGCGGGA
AGCCAAAATGCTTGCCTTCGCCTCAACGTTTCTTATGATCAACCCGCACGGTGCACCGTT
CGAGCAGGTCTGGGCGTACGTCGGTCGTTATGTGAACGAGATGAAGCCAAAGGAGCTGGA
GGATATGTTTGCCCGCTACCGGCAGCTGTTCGAGCGGTGCAATGCACCGGCTAGTGGCGA
ACGGCAGGTGCCGGGCGACGGGCAGAATGCCAGCAGTATCCCATCTAGTCCCTGCTATAG
ATTTATTGCCCACACGGCACCCGCAGTACAGTAAAGCAA

consensusID : consensus_3749#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [CGCCCGAGGTTTAGCTGGAGGACGAGCTGAAGGATCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGTCGGCCGCATCCAGTGCCGCGAGCGTATCTGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAAGAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGACCGGTGGAAATGGTAAGCAAAGCGACGGAAACGGCGCTGCCGATNATGGGCCGACGGTGGTGCCGAACGAGCGGGAAGCCAAAATGCTTGCCTTCGCTCAACGTTATCTTATGATCAACCCGCACGGTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGGTATGTGAACGAGATGAAGCCAAAGGAGCTGGAGGATATGTTTGCCCGNTACCGGCAGCTGTTCGAGGCGGTGCAATGCACCGGCTANTGGCGAACGGCAGGTGCGGGCTGACAGGGCAGAATGCCAGGCAGTATCCCATCTAGTCCCTGCTATAGATTTATTTGGCCACACGGGAACCGCAGTACAGTAAGGCAAATAGTTCGCTTCTAAAGCTTGCCGAGAGATGTTAATTTAGGTAGGTAGGTTTN]

[+] EMBL AL693249             [CGCCCGAGGTTTAGCTGGAGGACGAGCTGAAGGATCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGTCGGCCGCATCCAGTGCCGCGAGCGTATCTGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAAGAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGACCGGTGGAAATGGTAAGCAAAGCGACGGAAACGGCGCTGCCGATNATGGGCCGACGGTGGTGCCGAACGAGCGGGAAGCCAAAATGCTTGCCTTCGCTCAACGTTATCTTATGATCAACCCGCACGGTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGGTATGTGAACGAGATGAAGCCAAAGGAGCTGGAGGATATGTTTGCCCGNTACCGGCAGCTGTTCGAGGCGGTGCAATGCACCGGCTANTGGCGAACGGCAGGTGCGGGCTGACAGGGCAGAATGCCAGGCAGTATCCCATCTAGTCCCTGCTATAGATTTATTTGGCCACACGGGAACCGCAGTACAGTAAGGCAAATAGTTCGCTTCTAAAGCTTGCCGAGAGATGTTAATTTAGGTAGGTAGGTTTN]




>consensus_3749#1
CGCCCGAGGTTTAGCTGGAGGACGAGCTGAAGGATCGAACGTGAAGCAGCTGCTGCTGAA
GACGAAAATAGCCACCAGCAAGGTCGGCCGCATCCAGTGCCGCGAGCGTATCTGTCCTCG
GGCAAGGGCGGTGACTCGGAGAGCGAAGAGTGTCCCGCGGTCCATCTGCCGGACGGCGCC
CCGCTGGCCACGACCGGTGGAAATGGTAAGCAAAGCGACGGAAACGGCGCTGCCGATNAT
GGGCCGACGGTGGTGCCGAACGAGCGGGAAGCCAAAATGCTTGCCTTCGCTCAACGTTAT
CTTATGATCAACCCGCACGGTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGGTAT
GTGAACGAGATGAAGCCAAAGGAGCTGGAGGATATGTTTGCCCGNTACCGGCAGCTGTTC
GAGGCGGTGCAATGCACCGGCTANTGGCGAACGGCAGGTGCGGGCTGACAGGGCAGAATG
CCAGGCAGTATCCCATCTAGTCCCTGCTATAGATTTATTTGGCCACACGGGAACCGCAGT
ACAGTAAGGCAAATAGTTCGCTTCTAAAGCTTGCCGAGAGATGTTAATTTAGGTAGGTAG
GTTTN

consensusID : consensus_3749#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [CCCCCTGCTCAGGCAGAATCCGCCACGAGNTTAAAACGCATCTGCGAGCTGGAGGACGAGCTGAAGGATGCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGCGGCCGCATCCAGTGCCGCGAGCGTATCGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAAGAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGCCGGTGGAAATGGTAAGCAAAGCGACGGAAACGGCCACTGCCGATGATGGGCCGACGGTGCCGGTGGTGCCGAACGAACGGGAAGCCAAAATGCTTGCCTTCGCCTCAACGTTTCTTATGATCAACCCGCACGGTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGGTATGTGAATGAGATGAAGCCAAAGGAGCTGGAGGATATGTTTGCCCGCTACCGGCAGCTGTTCGAGCGGTGCAACGCACCGGCTAGATGGCGAACAGCAGGTGCCGGGCGACGGGCAGAATGCCAGCAGTATCCCATCTAGTCCCTGCTATAGATTTATTGCCCACACGGACCCGAGGTACA]

[+] EMBL BX466584             [CCCCCTGCTCAGGCAGAATCCGCCACGAGNTTAAAACGCATCTGCGAGCTGGAGGACGAGCTGAAGGATGCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGCGGCCGCATCCAGTGCCGCGAGCGTATCGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAAGAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGCCGGTGGAAATGGTAAGCAAAGCGACGGAAACGGCCACTGCCGATGATGGGCCGACGGTGCCGGTGGTGCCGAACGAACGGGAAGCCAAAATGCTTGCCTTCGCCTCAACGTTTCTTATGATCAACCCGCACGGTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGGTATGTGAATGAGATGAAGCCAAAGGAGCTGGAGGATATGTTTGCCCGCTACCGGCAGCTGTTCGAGCGGTGCAACGCACCGGCTAGATGGCGAACAGCAGGTGCCGGGCGACGGGCAGAATGCCAGCAGTATCCCATCTAGTCCCTGCTATAGATTTATTGCCCACACGGACCCGAGGTACA]




>consensus_3749#2
CCCCCTGCTCAGGCAGAATCCGCCACGAGNTTAAAACGCATCTGCGAGCTGGAGGACGAG
CTGAAGGATGCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGCG
GCCGCATCCAGTGCCGCGAGCGTATCGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAA
GAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGCCGGTGGAAATGGTA
AGCAAAGCGACGGAAACGGCCACTGCCGATGATGGGCCGACGGTGCCGGTGGTGCCGAAC
GAACGGGAAGCCAAAATGCTTGCCTTCGCCTCAACGTTTCTTATGATCAACCCGCACGGT
GCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGGTATGTGAATGAGATGAAGCCAAAG
GAGCTGGAGGATATGTTTGCCCGCTACCGGCAGCTGTTCGAGCGGTGCAACGCACCGGCT
AGATGGCGAACAGCAGGTGCCGGGCGACGGGCAGAATGCCAGCAGTATCCCATCTAGTCC
CTGCTATAGATTTATTGCCCACACGGACCCGAGGTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3749#0      CCGGGGCACGGCGGACAGTGCTGCCGAGCATCAGTCCCTGCACGACAGCGAGCTCAAGAT 60
consensus_3749#2      ------------------------------------------------------------
consensus_3749#1      ------------------------------------------------------------
                                                                                  

consensus_3749#0      GAAGATCCTGCACATTGAGGTGTTGCAGGAAACGATCCGCAACCTGCAGACCCAGCTGCT 120
consensus_3749#2      ---------------------------------------------------CCCCCTGCT 9
consensus_3749#1      ------------------------------------------------------------
                                                                                  

consensus_3749#0      CGAAAACAAAGCCAAAGAGACGGAACGCCAGAACCGCATCTGCGAGCTGGAGGACGAGCT 180
consensus_3749#2      C--AGGCAGAATC--CGCCACGA---GNTTAAAACGCATCTGCGAGCTGGAGGACGAGCT 62
consensus_3749#1      --------------------------------CGCCCGAGGTTTAGCTGGAGGACGAGCT 28
                                                        * *       ****************

consensus_3749#0      GAAGGATGCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGG-CGG 239
consensus_3749#2      GAAGGATGCGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGG-CGG 121
consensus_3749#1      GAAGGAT-CGAACGTGAAGCAGCTGCTGCTGAAGACGAAAATAGCCACCAGCAAGGTCGG 87
                      ******* ************************************************ ***

consensus_3749#0      CCGCATCCAGTGCCGCGAGCGTATC-GTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAA 298
consensus_3749#2      CCGCATCCAGTGCCGCGAGCGTATC-GTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAA 180
consensus_3749#1      CCGCATCCAGTGCCGCGAGCGTATCTGTCCTCGGGCAAGGGCGGTGACTCGGAGAGCGAA 147
                      ************************* **********************************

consensus_3749#0      GAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACG-CCGGTGGAAATGGT 357
consensus_3749#2      GAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACG-CCGGTGGAAATGGT 239
consensus_3749#1      GAGTGTCCCGCGGTCCATCTGCCGGACGGCGCCCCGCTGGCCACGACCGGTGGAAATGGT 207
                      ********************************************* **************

consensus_3749#0      AAGCAAAGCGACGGAAACGGCCGCTGCCGATGATGGGCCGACGGTG------GTGCCGAA 411
consensus_3749#2      AAGCAAAGCGACGGAAACGGCCACTGCCGATGATGGGCCGACGGTGCCGGTGGTGCCGAA 299
consensus_3749#1      AAGCAAAGCGACGGAAACGGC-GCTGCCGATNATGGGCCGACGGTG------GTGCCGAA 260
                      *********************  ******** **************      ********

consensus_3749#0      CGAGCGGGAAGCCAAAATGCTTGCCTTCGCCTCAACGTT-TCTTATGATCAACCCGCACG 470
consensus_3749#2      CGAACGGGAAGCCAAAATGCTTGCCTTCGCCTCAACGTT-TCTTATGATCAACCCGCACG 358
consensus_3749#1      CGAGCGGGAAGCCAAAATGCTTGCCTTCGC-TCAACGTTATCTTATGATCAACCCGCACG 319
                      *** ************************** ******** ********************

consensus_3749#0      GTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGTTATGTGAACGAGATGAAGCCAA 530
consensus_3749#2      GTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGGTATGTGAATGAGATGAAGCCAA 418
consensus_3749#1      GTGCACCGTTCGAGCAGGTCTGGGCGTACGTCGGTCGGTATGTGAACGAGATGAAGCCAA 379
                      ************************************* ******** *************

consensus_3749#0      AGGAGCTGGAGGATATGTTTGCCCGCTACCGGCAGCTGTTCGAG-CGGTGCAATGCACCG 589
consensus_3749#2      AGGAGCTGGAGGATATGTTTGCCCGCTACCGGCAGCTGTTCGAG-CGGTGCAACGCACCG 477
consensus_3749#1      AGGAGCTGGAGGATATGTTTGCCCGNTACCGGCAGCTGTTCGAGGCGGTGCAATGCACCG 439
                      ************************* ****************** ******** ******

consensus_3749#0      GCTAG-TGGCGAACGGCAGGTGCCGGGCGAC-GGGCAGAATGCCAG-CAGTATCCCATCT 646
consensus_3749#2      GCTAGATGGCGAACAGCAGGTGCCGGGCGAC-GGGCAGAATGCCAG-CAGTATCCCATCT 535
consensus_3749#1      GCTAN-TGGCGAACGGCAGGTGCGGGCTGACAGGGCAGAATGCCAGGCAGTATCCCATCT 498
                      ****  ******** ******** **  *** ************** *************

consensus_3749#0      AGTCCCTGCTATAGATTTATT-GCCCACACGGCACCCGCAGTACAGTAAAGCAA------ 699
consensus_3749#2      AGTCCCTGCTATAGATTTATT-GCCCACACGG-ACCCGAGGTACA--------------- 578
consensus_3749#1      AGTCCCTGCTATAGATTTATTTGGCCACACGGGAACCGCAGTACAGTAAGGCAAATAGTT 558
                      ********************* * ******** * ***  *****               

consensus_3749#0      -----------------------------------------------
consensus_3749#2      -----------------------------------------------
consensus_3749#1      CGCTTCTAAAGCTTGCCGAGAGATGTTAATTTAGGTAGGTAGGTTTN 605