|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence
[CCAGGGTTATGTCCTCACGATCAGCTAGCGAAGCATATTTTGTGGTAGAAACTCTAAACTCTATCTATTTGTATATTATATCCACAACGAAAAGATCCCCCCTCCTCATAGTGACTGCTCTTTGATCTAAAACACAAAAGTGTGTCTGACCACTTAAAATTCTGGTGTATCNATTGAATCGCGATCAGCAGTAACGATCGACTATGCTCGGTAGAATTTGTATGGGNAAACGTTCAGCGGAAGGTTTACGGGACGACGGTCGCGCGCGTTTCNAGTCTCTATATATGTANAAGGCGGGTTGGCCGCCAAGTCCCACGTGTTTGGGGGTCCGAGTCCTGGCAGTGCNTAGTGAAGGNCNGAGTGATAGAGGCCGATTGTGGCCATTTCATACCATATTCTGACNNCATTGTGGCTCAAAGGGACAATAAAAGGTTGAGGGTGCCAGATTTATTTGTCACTAACAGCACAGATNTGNACGCAGNGATGATCCGGAGGAACGGTAATTGAAGCGCATGTGCAACTAGTGCATCAAAGTTAAGATGGCAGAAGGAACAAGACTACCTCCCAATTGGGACAAGNGGCTCAATAAGCCATGGCATCCATTTCATACCAACCGTCCGGACCAGCAATTTCCCTTGGAATTGGTTACAACGTTTGGTTGGCTCCCTTGTGCTGGCACACTTGAGTGGCNGGTTGGGTTTGGTNAGCGTTGCAAGTTCAACACGGTTGGCGTTAACCCCGGGGAAAAACCGGCAAACGGGCGCGGCGAGGCAAGGTTTATGGGCAAGAAGGCATTCCCCACAGNGAACAGGCTGTACGGAAAGCNGGTTACCTGAACCCCAAACCACTTGGCTCTCACCCAGTCTTGGGAAACTTAGGGGAG]
[+] EMBL AL693291 [CCAGGGTTATGTCCTCACGATCAGCTAGCGAAGCATATTTTGTGGTAGAAACTCTAAACTCTATCTATTTGTATATTATATCCACAACGAAAAGATCCCCCCTCCTCATAGTGACTGCTCTTTGATCTAAAACACAAAAGTGTGTCTGACCACTTAAAATTCTGGTGTATCNATTGAATCGCGATCAGCAGTAACGATCGACTATGCTCGGTAGAATTTGTATGGGNAAACGTTCAGCGGAAGGTTTACGGGACGACGGTCGCGCGCGTTTCNAGTCTCTATATATGTANAAGGCGGGTTGGCCGCCAAGTCCCACGTGTTTGGGGGTCCGAGTCCTGGCAGTGCNTAGTGAAGGNCNGAGTGATAGAGGCCGATTGTGGCCATTTCATACCATATTCTGACNNCATTGTGGCTCAAAGGGACAATAAAAGGTTGAGGGTGCCAGATTTATTTGTCACTAACAGCACAGATNTGNACGCAGNGATGATCCGGAGGAACGGTAATTGAAGCGCATGTGCAACTAGTGCATCAAAGTTAAGATGGCAGAAGGAACAAGACTACCTCCCAATTGGGACAAGNGGCTCAATAAGCCATGGCATCCATTTCATACCAACCGTCCGGACCAGCAATTTCCCTTGGAATTGGTTACAACGTTTGGTTGGCTCCCTTGTGCTGGCACACTTGAGTGGCNGGTTGGGTTTGGTNAGCGTTGCAAGTTCAACACGGTTGGCGTTAACCCCGGGGAAAAACCGGCAAACGGGCGCGGCGAGGCAAGGTTTATGGGCAAGAAGGCATTCCCCACAGNGAACAGGCTGTACGGAAAGCNGGTTACCTGAACCCCAAACCACTTGGCTCTCACCCAGTCTTGGGAAACTTAGGGGAG]
consensusID : consensus_3752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[GCAGAATCGGCACGTAGGGTGGTGTCCCTCACGATCAGCCTAGGGAAGCATAGTTGTGGAGAAACTCTAAACTCTTCTATTTGTTATTATATCCACAACAAAAGATCCCCCCTCCTCATAGTGACGCTCTTTATCAAGAACACAAAAGTGGTCTGACCACTTTTTATTCGGTTTCATTGAACGCGATCGCGTAACGATCGCTTGCTGGTGAATTTTTGGCCAAACGTCAGCGAAGGTTAGGGACGACGCGCGCGCGTTCAGTCTTTATTGTTAAGCGGTGGCCGCCAGTCCAGTGTTGGGTCGGTCTGCGTGCTGGAGCGAGTGATGAGCGTTGTGCATTAAAAGTTTTGAACATTGGGCTCAAGGGCATAAGTGAGGGCCACTTTTGCACACGAGCACAGTTGAGCGGTGATCGGAGGAACGGTATTGAACCAGTGAATAGTGCATCAAGTTAAGATGGCAGAAGAAAAGACTACCCCAATGGCAGCGCTAAAGCAGCTCATGCNAGCGAGCTCCGGACAACATNNACCTGNATGTACAGTGTGCTCTGCAGACCCATGGGGCGTGGAGTACGGCATCACGTGCGTACCGGGAAGACGGAAAGGGGACCCGGCGGNAANGGTNTGGGGAAACAGGGCGANTTCCCAGGGAAAANGCCCTGGTATNCGGNAAACCGGTTCAGGAAAGCCGCGAAAGAGCCACTTGGGGTNTGCCCCNAGGNCT]
[+] EMBL BX467525 [GCAGAATCGGCACGTAGGGTGGTGTCCCTCACGATCAGCCTAGGGAAGCATAGTTGTGGAGAAACTCTAAACTCTTCTATTTGTTATTATATCCACAACAAAAGATCCCCCCTCCTCATAGTGACGCTCTTTATCAAGAACACAAAAGTGGTCTGACCACTTTTTATTCGGTTTCATTGAACGCGATCGCGTAACGATCGCTTGCTGGTGAATTTTTGGCCAAACGTCAGCGAAGGTTAGGGACGACGCGCGCGCGTTCAGTCTTTATTGTTAAGCGGTGGCCGCCAGTCCAGTGTTGGGTCGGTCTGCGTGCTGGAGCGAGTGATGAGCGTTGTGCATTAAAAGTTTTGAACATTGGGCTCAAGGGCATAAGTGAGGGCCACTTTTGCACACGAGCACAGTTGAGCGGTGATCGGAGGAACGGTATTGAACCAGTGAATAGTGCATCAAGTTAAGATGGCAGAAGAAAAGACTACCCCAATGGCAGCGCTAAAGCAGCTCATGCNAGCGAGCTCCGGACAACATNNACCTGNATGTACAGTGTGCTCTGCAGACCCATGGGGCGTGGAGTACGGCATCACGTGCGTACCGGGAAGACGGAAAGGGGACCCGGCGGNAANGGTNTGGGGAAACAGGGCGANTTCCCAGGGAAAANGCCCTGGTATNCGGNAAACCGGTTCAGGAAAGCCGCGAAAGAGCCACTTGGGGTNTGCCCCNAGGNCT]
consensusID : consensus_3752#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCGTGTGGTGTCCCTCACGATCAGCTAGGGAAGCATAGTTGTGGAGAAACTCTAAACTCTTCTATTTGTTATTATATCCACAACAAAAGATCCCCCCTCCTCATAGTGACGCTCTTTATCAAAACACAAAAGTGGTCTGACCACTTTTTATTCGGTTTCATTGAACGCGATCGCGTAACGATCGCTTGATGGTGAATTTTTGGCAAACGTTAGCGAAGGTTAGGGACAACGCGCGCGCGATCAGTCTTTATTGTTAAACGGTGGCCGCCAGTCCAGTGTTGGGTCGGTCTGCGTGCTGGGGCGAGTGATGAGCGTTGTGCATTAAAATTTTGGACATTGGCTCAAGGCATAAGTGAGGGCCACTTTTGCACACACACAGTTGAGCGGTGATCGGAGGAACGGTATTAACCAGTGAATAGTGCATCAAGTTAAGATGGCAGAAGAAAAGACTACCCCAATGGCAGCGCTAAAGCAGACGCTCCTCTCGCTGTCCCGTGTCGCTGTCCTACTACTGGCATCGGGCTGGTGCGCGGCTACTCCCGCACCGGCCGTCCCCTCCATGCACGCCACCGGTGCCGGA]
[+] EMBL BM638492 [CCGCCCACGCGTCCGCCCACGCGTCCGCGTGTGGTGTCCCTCACGATCAGCTAGGGAAGCATAGTTGTGGAGAAACTCTAAACTCTTCTATTTGTTATTATATCCACAACAAAAGATCCCCCCTCCTCATAGTGACGCTCTTTATCAAAACACAAAAGTGGTCTGACCACTTTTTATTCGGTTTCATTGAACGCGATCGCGTAACGATCGCTTGATGGTGAATTTTTGGCAAACGTTAGCGAAGGTTAGGGACAACGCGCGCGCGATCAGTCTTTATTGTTAAACGGTGGCCGCCAGTCCAGTGTTGGGTCGGTCTGCGTGCTGGGGCGAGTGATGAGCGTTGTGCATTAAAATTTTGGACATTGGCTCAAGGCATAAGTGAGGGCCACTTTTGCACACACACAGTTGAGCGGTGATCGGAGGAACGGTATTAACCAGTGAATAGTGCATCAAGTTAAGATGGCAGAAGAAAAGACTACCCCAATGGCAGCGCTAAAGCAGACGCTCCTCTCGCTGTCCCGTGTCGCTGTCCTACTACTGGCATCGGGCTGGTGCGCGGCTACTCCCGCACCGGCCGTCCCCTCCATGCACGCCACCGGTGCCGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3752#1 --------GCAGA-ATCGGCACGTAGG---GTGGTGTCCCTCACGATCAGCCTAGGGAAG 48
consensus_3752#2 CCGCCCACGCGTCCGCCCACGCGTCCGCGTGTGGTGTCCCTCACGATCAGC-TAGGGAAG 59
consensus_3752#0 ----------------------CCAGG---GTTATGTCC-TCACGATCAGC-TAGCGAAG 33
* ** ***** *********** *** ****
consensus_3752#1 CATAGTT-GTGG-AGAAACTCTAAACTCT-TCTATTTGT-TATTATATCCACAAC-AAAA 103
consensus_3752#2 CATAGTT-GTGG-AGAAACTCTAAACTCT-TCTATTTGT-TATTATATCCACAAC-AAAA 114
consensus_3752#0 CATATTTTGTGGTAGAAACTCTAAACTCTATCTATTTGTATATTATATCCACAACGAAAA 93
**** ** **** **************** ********* *************** ****
consensus_3752#1 GATCCCCCCTCCTCATAGTGAC-GCTCTTT-ATCAAGAACACAAAAGTG-GTCTGACCAC 160
consensus_3752#2 GATCCCCCCTCCTCATAGTGAC-GCTCTTT-ATCAA-AACACAAAAGTG-GTCTGACCAC 170
consensus_3752#0 GATCCCCCCTCCTCATAGTGACTGCTCTTTGATCTAAAACACAAAAGTGTGTCTGACCAC 153
********************** ******* *** * ************ **********
consensus_3752#1 TTTTTATTC-GGT---TTCATTGAA-CGCGATCGC--GTAACGATCGCTTGC---TGGTG 210
consensus_3752#2 TTTTTATTC-GGT---TTCATTGAA-CGCGATCGC--GTAACGATCGCTTGA---TGGTG 220
consensus_3752#0 TTAAAATTCTGGTGTATCNATTGAATCGCGATCAGCAGTAACGATCGACTATGCTCGGTA 213
** **** *** * ****** ******* ********** * ***
consensus_3752#1 AATTTT---TGGCCAAACGT-CAGCGAAGG--TTA-GGGACGACG--CGCGCGCGTT--C 259
consensus_3752#2 AATTTT---TGGC-AAACGT-TAGCGAAGG--TTA-GGGACAACG--CGCGCGCGAT--C 268
consensus_3752#0 GAATTTGTATGGGNAAACGTTCAGCGGAAGGTTTACGGGACGACGGTCGCGCGCGTTTCN 273
* *** *** ****** **** * * *** ***** *** ******** *
consensus_3752#1 AGTCTTTAT-----TGTTAAGCGG--TGGCCGCCA-GTCCA--GTGTT---GGGTC--GG 304
consensus_3752#2 AGTCTTTAT-----TGTTAAACGG--TGGCCGCCA-GTCCA--GTGTT---GGGTC--GG 313
consensus_3752#0 AGTCTCTATATATGTANAAGGCGGGTTGGCCGCCAAGTCCCACGTGTTTGGGGGTCCGAG 333
***** *** * * *** ********* **** ***** ***** *
consensus_3752#1 TC-------TGCGTGCTGGAG---CGAGTGATGAGCG----TTGTG-------CATTAAA 343
consensus_3752#2 TC-------TGCGTGCTGGGG---CGAGTGATGAGCG----TTGTG-------CATTAAA 352
consensus_3752#0 TCCTGGCAGTGCNTAGTGAAGGNCNGAGTGATAGAGGCCGATTGTGGCCATTTCATACCA 393
** *** * ** * ******* * ***** *** *
consensus_3752#1 AGTTTTG--AACATTG-GGCTCAAGGGCATAA---------GTGAGGGCCACTTTTG--- 388
consensus_3752#2 A-TTTTG--GACATTG-G-CTCAAGG-CATAA---------GTGAGGGCCACTTTTG--- 394
consensus_3752#0 TATTCTGACNNCATTGTGGCTCAAAGGGACAATAAAAGGTTGAGGGTGCCAGATTTATTT 453
** ** ***** * ***** * * ** * * * **** ***
consensus_3752#1 --CAC-ACGAGCACAGTTG-------AGCGGTGATC-GGAGGAACGGTA-TTGAACCA-- 434
consensus_3752#2 --CAC-ACA--CACAGTTG-------AGCGGTGATC-GGAGGAACGGTA-TT-AACCA-- 437
consensus_3752#0 GTCACTAACAGCACAGATNTGNACGCAGNGATGATCCGGAGGAACGGTAATTGAAGCGCA 513
*** * ***** * ** * ***** ************ ** ** *
consensus_3752#1 ---GTGAATAGTGCATCAA-GTTAAGATGGCAGAAGAAA--AGACTACC--CCAATGGC- 485
consensus_3752#2 ---GTGAATAGTGCATCAA-GTTAAGATGGCAGAAGAAA--AGACTACC--CCAATGGC- 488
consensus_3752#0 TGTGCAACTAGTGCATCAAAGTTAAGATGGCAGAAGGAACAAGACTACCTCCCAATTGGG 573
* * *********** **************** ** ******** ***** *
consensus_3752#1 ---AGCGCTAAAGCAGCTCATGCNAGCGAGCTCCGGACAACATNNACCTGNATGTACAGT 542
consensus_3752#2 ---AGCGCTAAAGCAG---ACGCTC-----CTCT------CGCTGTCCCGTGT---CGCT 528
consensus_3752#0 ACAAGNGGCTCAATAAGCCATGGCATCCATTTCA---TACCAACCGTCCGGACCAGCAAT 630
** * * * * * ** * * * * *
consensus_3752#1 GTGCT-CTGCAG-ACCCATGGGGCGTGGAGTACGGCATCACGT--GCGTACCGGGAAGAC 598
consensus_3752#2 GTCCTACTACTG-GC--ATCGGGC-TGGTGCGCGGC--TACTC--CCGCACCGGCCGTCC 580
consensus_3752#0 TTCCCTTGGAATTGGTTACAACGTTTGGTTGGCTCCCTTGTGCTGGCACACTTGAGTGGC 690
* * * * *** * * * ** * *
consensus_3752#1 GGAAAGGGGAC-CCGGCGGNAANGGTNTGGGGAAACAGGGCGANTTCCCAGGGAAAANGC 657
consensus_3752#2 CCTCCATGCACGCCACCGGTGCCGGA---------------------------------- 606
consensus_3752#0 NGGTTGGGTTTGGTNAGCGTTGCAAGTTCAACACGGTTGGCGTTAACCCCGGGGAAAAAC 750
* *
consensus_3752#1 CCTGGTATNCGGNAAACCGGTTCAGGAAAGCCGCGAAAGAGCCACTTGGGGTNTGCCCCN 717
consensus_3752#2 ------------------------------------------------------------
consensus_3752#0 CGGCAAACGGGCGCGGCGAGGCAAGGTTTATGGGCAAGAAGGCATTCCCCACAGNGAACA 810
consensus_3752#1 AGGNCT------------------------------------------------------ 723
consensus_3752#2 ------------------------------------------------------------
consensus_3752#0 GGCTGTACGGAAAGCNGGTTACCTGAACCCCAAACCACTTGGCTCTCACCCAGTCTTGGG 870
consensus_3752#1 -------------
consensus_3752#2 -------------
consensus_3752#0 AAACTTAGGGGAG 883
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||