These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 818 fasta sequence [CCCGAGGTTACCACAGTGTGTTCCCCGGCAGTATGTCCACGTGCTGTGCGCGGTGTAGCTGTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGCGCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGAGTGTCGTTTAAAAGTGG-CGCCAGGCGAGNGGGAGGTAATCGG-TAACGCCAA-ACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGAGTCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGG-AACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGGCAAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTT-CAGACGCAGTACGACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTTCGCTGAACGAACTGAACGGCGCGCGCAATGGAACCGTTTTCGGTGGGCCGTAAGTGGAAGAANGGCTAGCCCGGTGCTGCCACTGTTGTTTGGTANGGGCTGCGATGTGTGTGAATGTGGGGAAAGGGGTCTTCATTTATG] [+] EMBL AL693333 [CCCGAGGTTACCACAGTGTGTTCCCCGGCAGTATGTCCACGTGCTGTGCGCGGTGTAGCTGTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGCGCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGAGTGTCGTTTAAAAGTGG CGCCAGGCGAGNGGGAGGTAATCGG TAACGCCAA ACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGAGTCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGG AACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGGCAAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTT CAGACGCAGTAC ] [+] EMBL BX622771 [ gcGTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGCGCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGG GTGTCGTTTAAAAGTGGCCGCCAGGCG GAGGGAGGTAATCGGCTAACGCCAACACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGA TCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGCAACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCT GC AGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTACGACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTTCGCTGAACGAACTGAACGGCGCGCGCAATGGAACCGTTTTCGGTGGGCCGTAAGTGGAAGAANGGCTAGCCCGGTGCTGCCACTGTTGTTTGGTANGGGCTGCGATGTGTGTGAATGTGGGGAAAGGGGTCTTCATTTATG] consensusID : consensus_3753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [GTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGGTGTCGTTTAAAAGTGGCCGCCAGGCGGAGGGAGGTAATCGGCTAACGCCAACACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGATCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGCAACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGCAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTACGACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTGAGAGCGAGCGTGAGTTTGACTGGCTGGTGCAGTGAGTTTGATGCTAGAATTTGTTTTGCTCTTTCTTTTCCCGGTGTCCCCATCTANGTTCGCTGAACGAACTGAACGGCGCGCGCAATGG] [+] EMBL BX627089 [GTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGGTGTCGTTTAAAAGTGGCCGCCAGGCGGAGGGAGGTAATCGGCTAACGCCAACACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGATCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGCAACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGCAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTACGACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTGAGAGCGAGCGTGAGTTTGACTGGCTGGTGCAGTGAGTTTGATGCTAGAATTTGTTTTGCTCTTTCTTTTCCCGGTGTCCCCATCTANGTTCGCTGAACGAACTGAACGGCGCGCGCAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3753#0 CCCGAGGTTACCACAGTGTGTTCCCCGGCAGTATGTCCACGTGCTGTGCGCGGTGTAGCT 60 consensus_3753#1 ------------------------------------------------------------ consensus_3753#0 GTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGC 120 consensus_3753#1 ------------------------------------------------------------ consensus_3753#0 GCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCC 180 consensus_3753#1 ----------------------------------GTGCCGGATGTGATCGACGAAGCGCC 26 ************************** consensus_3753#0 CGACTGTTGGGCCCGGAGTGTCGTTTAAAAGTGGC-GCCAGGCGAGNGGGAGGTAATCGG 239 consensus_3753#1 CGACTGTTGGGCCCGG-GTGTCGTTTAAAAGTGGCCGCCAGGCG-GAGGGAGGTAATCGG 84 **************** ****************** ******** * ************* consensus_3753#0 -TAACGCCAA-ACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCG 297 consensus_3753#1 CTAACGCCAACACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCG 144 ********* ************************************************* consensus_3753#0 TTGTACACGCTGATCCTGACCGAGTCCGGACGTACCGTCACGGGATGATCCACGCTATCG 357 consensus_3753#1 TTGTACACGCTGATCCTGACCGA-TCCGGACGTACCGTCACGGGATGATCCACGCTATCG 203 *********************** ************************************ consensus_3753#0 GGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGG-AACGATATCGATCGGGGTGAAAC 416 consensus_3753#1 GGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGCAACGATATCGATCGGGGTGAAAC 263 ************************************ *********************** consensus_3753#0 GCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCT 476 consensus_3753#1 GCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCT 323 ************************************************************ consensus_3753#0 GCTGGTGTTTGAGCATCTGGCAAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCA 536 consensus_3753#1 GCTGGTGTTTGAGCATCTGC--AGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCA 381 ******************* ************************************** consensus_3753#0 CAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTG 596 consensus_3753#1 CAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTG 441 ************************************************************ consensus_3753#0 AGTGGCGTGTACGCGGGCAACTTCTTC-AGACGCAGTACGACGATTACGTGAACACGCTG 655 consensus_3753#1 AGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTACGACGATTACGTGAACACGCTG 501 *************************** ******************************** consensus_3753#0 CAGGCACAGCTACGCGAATGTTCGC-TGAACGAA---CTGAACGGCGCGCGCAATGGAAC 711 consensus_3753#1 CAGGCACAGCTACGCGAATGTGAGAGCGAGCGTGAGTTTGACTGGCTGGTGCAGTGA--- 558 ********************* * ** ** *** *** * *** ** consensus_3753#0 CGTTTTCGGTGGGCCGTAAGTGGAAGAANGGCTAGCCCGGTGCTGCCACTGTTGTTTGGT 771 consensus_3753#1 -GTTTGATGCTAGAATTTGTTTTGCTCTTTCTTTTCCCGGTGTCCCCATCTANGTTCGCT 617 **** * * * * * ******* *** *** * * consensus_3753#0 --ANGGGCTGCGATGTGTGTGAATGTGGGGAAAGGGGTCTTCATTTATG 818 consensus_3753#1 GAACGAACTGAACGGCGCGCGCA-ATGG--------------------- 644 * * *** * * * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||