These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1082 fasta sequence [CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGCTGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGTGCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGGGGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGGCGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGATGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCATTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGGTCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCTCCGAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACACGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTG] [+] EMBL BM624129 [CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGCTGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGTGCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGGGGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGGCGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGATGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCATTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGGTCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCTCCGAAGAATGCTTG ] [+] EMBL BM606817 [ ccgGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTGGTGGCAGTGCAGCGGCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGATAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCT GAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACACGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTG] consensusID : consensus_3758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [GGCCTGAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACACGGCGCCCTCCCGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGTGTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACACGTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA] [+] EMBL BX605094 [GGCCTGAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACACGGCGCCCTCCCGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGTGTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACACGTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3758#0 CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGC 60 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 TGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGT 120 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 GCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGG 180 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 GGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGG 240 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 CGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGA 300 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 TGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCA 360 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 TTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGG 420 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 TCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGA 480 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 GCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGA 540 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 AGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGC 600 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 GCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACG 660 consensus_3758#1 ------------------------------------------------------------ consensus_3758#0 GGCCTCCGAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACA 720 consensus_3758#1 GGCCT--GAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACA 58 ***** *************************** *********** * *********** consensus_3758#0 CGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACA 780 consensus_3758#1 CGGCGCCCTCCCGCCAGCCAGCCA----------------GCCAGCCTTCCCCCCACACA 102 ** ********************* ******************** consensus_3758#0 AACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGA 840 consensus_3758#1 AACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGA 162 ******************** *************************************** consensus_3758#0 TGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTA 900 consensus_3758#1 TGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTA 222 ********************************* ************************** consensus_3758#0 ATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGT 960 consensus_3758#1 ATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAA-CCCGCTGT 281 *************************************************** ******** consensus_3758#0 CATTACTTCCTCTTACGACAAGAAAA-CAAGCAAAGATCAAGCTTCTGGTGTATTAGCAA 1019 consensus_3758#1 CATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAA 341 ************************** ********************************* consensus_3758#0 TTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGA 1079 consensus_3758#1 TTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGA 401 ************************************************************ consensus_3758#0 TTG--------------------------------------------------------- 1082 consensus_3758#1 TTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGT 461 *** consensus_3758#0 ------------------------------------------------------------ consensus_3758#1 GTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACAC 521 consensus_3758#0 ------------------------------------------------ consensus_3758#1 GTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA 569 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||