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Anopheles gambiae
cluster # 3758 cluster # 3758       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3758#0 length = 1082 sequences # 2  
consensus_3758#1 length = 569 sequences # 1  

consensusID : consensus_3758#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1082
fasta sequence
                              [CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGCTGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGTGCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGGGGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGGCGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGATGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCATTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGGTCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCTCCGAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACACGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTG]

[+] EMBL BM624129             [CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGCTGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGTGCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGGGGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGGCGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGATGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCATTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGGTCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCTCCGAAGAATGCTTG                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM606817             [                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGAGCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTGGTGGCAGTGCAGCGGCGAAGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGCGCGATAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACGGGCCT  GAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACACGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTG]


>consensus_3758#0 CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGC TGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGT GCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGG GGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGG CGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGA TGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCA TTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGG TCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGA GCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGA AGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGC GCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACG GGCCTCCGAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACA CGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACA AACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGA TGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTA ATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGT CATTACTTCCTCTTACGACAAGAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAAT TTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGAT TG



consensusID : consensus_3758#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence
                              [GGCCTGAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACACGGCGCCCTCCCGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGTGTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACACGTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA]

[+] EMBL BX605094             [GGCCTGAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACACGGCGCCCTCCCGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAACCCGCTGTCATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGTGTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACACGTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA]


>consensus_3758#1 GGCCTGAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACACG GCGCCCTCCCGCCAGCCAGCCAGCCAGCCTTCCCCCCACACAAACCAGCTATTAATACTT AGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGATGAGGGCCGCGCACAGAG GACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTAATACTACTACTACTACTA CTCTTAATACTACTACAAAAACAAACAAAAAAACCCGCTGTCATTACTTCCTCTTACGAC AAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAATTTATGAGTTTTTGTTTTA ATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGATTGACCACCGATAGGAAAT GGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGTGTGTAGGCATCGATTCCCA GCTAAACGCGTGCGCGCACACACACAGACACATGCATACACGTGCACGGTAGCGTTCAAA TTCGGTTACACCTCCGTTTAGTAGTAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3758#0      CCGATTCCGGCGAGCAGCAGCGTCATCAGCGACAGCAACAGGCCGACGAGGAACGCGAGC 60
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      TGAAAGATGGGGAAGGTGAGGAGGTGCAGCTTGCTGCTGGTGCTGGCGCTACCGGTGCGT 120
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      GCTCGTCCGAGCGTGGAGTCGATGTAGCGAACGTGGAAATGCATGGCGGAGCAGGAGCGG 180
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      GGATGGTAGAGCGACACAACGACCACGACAACGACGAGGACGACGAGTGTGGCGAGGAGG 240
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      CGATCGAGCAACCGACCTCCTCCATGTCGACCGACGACGATGCGGCCTACTGCTCCGAGA 300
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      TGGAAACGTCCTCGGCCGTCTCCACACCGTCGGCCGCACCGGCCGCGACACTGGCGACCA 360
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      TTCCATCGCAGAATGTACCATTACCGGGCGGCAGCAGCAGCAGCAGCAGCAGCAGTCAGG 420
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      TCGTGCCATCGTCCGACAGCATCGCGGACGACCTGTCCTCGGATCTTGTGAACGGCGAGA 480
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      GCGTACCGACGACGCCTCCCTCCCCCACCACTGCTGGCACTTGTGGCAGTGCAGCGCCGA 540
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      AGAAGGGCGCCGACAGCAACGGTGGCAACAGCGGCAGCAATAGCAGCACACCCAAGATGC 600
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      GCGACAACTTCTTCAAGCGACGCTCCAAAGGCAAGAAGTAACTCGCTTTTTGCGGGCACG 660
consensus_3758#1      ------------------------------------------------------------
                                                                                  

consensus_3758#0      GGCCTCCGAAGAATGCTTGGGAGCGCGCTTGCACCCGTACCCAGCACCGTTTGGTCGACA 720
consensus_3758#1      GGCCT--GAAGAATGCTTGGGAGCGCGCTTGCACTCGTACCCAGCATCATTTGGTCGACA 58
                      *****  *************************** *********** * ***********

consensus_3758#0      CGCCGCCCTCCCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTTCCCCCCACACA 780
consensus_3758#1      CGGCGCCCTCCCGCCAGCCAGCCA----------------GCCAGCCTTCCCCCCACACA 102
                      ** *********************                ********************

consensus_3758#0      AACCAGCTATTAATACTTAGATGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGA 840
consensus_3758#1      AACCAGCTATTAATACTTAGTTGCTGCACAGAGCGTAATGATAAGTGCGCTGGAGGAGGA 162
                      ******************** ***************************************

consensus_3758#0      TGAGGGCCGCGCACAGAGGACGACTGCTGCGGAATTTTAGGCCGATTGTTAATACTATTA 900
consensus_3758#1      TGAGGGCCGCGCACAGAGGACGACTGCTGCGGATTTTTAGGCCGATTGTTAATACTATTA 222
                      ********************************* **************************

consensus_3758#0      ATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAAACCCGCTGT 960
consensus_3758#1      ATACTACTACTACTACTACTCTTAATACTACTACAAAAACAAACAAAAAAA-CCCGCTGT 281
                      *************************************************** ********

consensus_3758#0      CATTACTTCCTCTTACGACAAGAAAA-CAAGCAAAGATCAAGCTTCTGGTGTATTAGCAA 1019
consensus_3758#1      CATTACTTCCTCTTACGACAAGAAAAACAAGCAAAGATCAAGCTTCTGGTGTATTAGCAA 341
                      ************************** *********************************

consensus_3758#0      TTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGA 1079
consensus_3758#1      TTTATGAGTTTTTGTTTTAATTGAATATAGAGCGAACAATTCTTCCTCGCGTTCCCCCGA 401
                      ************************************************************

consensus_3758#0      TTG--------------------------------------------------------- 1082
consensus_3758#1      TTGACCACCGATAGGAAATGGGATGAAAAAAAAAAAACAACCAGAAAACCATACAAAAGT 461
                      ***                                                         

consensus_3758#0      ------------------------------------------------------------
consensus_3758#1      GTGTAGGCATCGATTCCCAGCTAAACGCGTGCGCGCACACACACAGACACATGCATACAC 521
                                                                                  

consensus_3758#0      ------------------------------------------------
consensus_3758#1      GTGCACGGTAGCGTTCAAATTCGGTTACACCTCCGTTTAGTAGTAGGA 569
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)