cluster # 3759

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Anopheles gambiae
cluster # 3759 cluster # 3759 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3759#0 length = 753 sequences # 2

consensus_3759#1 length = 518 sequences # 1

consensusID : consensus_3759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 753
fasta sequence

                              [GACCCACGCGTCCGCGGACGCGTGGGCGCAAACACGCCGCACACGTTCGTTTTCGTAGAAATTGTATTATTTAAACTTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTTCCTCCAGCCCCCCAAACATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATGATTATGGCGTGCTGAAGGGTGATCTCGTGTTCATACGCAACAACGAAAACCTCATGCAAGCCATCGATCAGATACAGGAAACGCTGGCCAACGTGAATCGGGAGTATGAAAAGTATCCGAACTTTACGGCGGAGGAAAAGGTTCGCTTCGACACGCTGTGTGCGTTTTGCGTGAACTCACTGTTCTGGATGCACGAGAAGATGCTCGGTCGACCGAACACCGTCATGGATGACATTAAAGCGGATCTCGACCGGGTGCGGGAAGCGATGAAACGGTTGCAGACCATACACGATAACCTCACCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAAAGGTTCGTGCGGGCCGGGCTGTACGATGCTAACAACACGGAAAGCGACAAACAGAACGATGCACCACCAAACAAAAAGAAGCGCCGGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAGCACCCGGCCTGTGTGCTACTGGGGTAGGTACAATAAGAGATGTTGTATGTGGATAGACGAGATTTAAACATGTACTAAATAACGTAAGGCAGATGTCGTCAGGGATAATAAAACAAAG]

[+] EMBL BM593873             [GACCCACGCGTCCGCGGACGCGTGGGCGCAAACACGCCGCACACGTTCGTTTTCGTAGAAATTGTATTATTTAAACTTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTTCCTCCAGCCCCCCAAACATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATGATTATGGCGTGCTGAAGGGTGATCTCGTGTTCATACGCAACAACGAAAACCTCATGCAAGCCATCGATCAGATACAGGAAACGCTGGCCAACGTGAATCGGGAGTATGAAAAGTATCCGAACTTTACGGCGGAGGAAAAGGTTCGCTTCGACACGCTGTGTGCGTTTTGCGTGAACTCACTGTTCTGGATGCACGAGAAGATGCTCGGTCGACCGAACACCGTCATGGATGACATTAAAGCGGATCTCGACCGGGTGCGGGAAGCGATGAAACGGTTGCAGACCATACACGATAACCTCACCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAAAGGTTCGTGCGGGCCGGGCTGTACGATGCTAACAACACGGAAAGCGACAAACAGAACGATGCACCACCAAACAAAAAGAAGCGCCGGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAGCACCCGGCCTG                                                                                                           ]
[+] EMBL BX623952             [                                             TTCGTTTTCGTAGAAATTGTATTATTTAAACTTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTTCCTCCAGCCCCCCAAACATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATGATTATGGCGTGCTGAAGGGTGATCTCGTGTTCATACGCAACAACGAAAACCTCATGCAAGCCATCGATCAGATACAGGAAACGCTGGCCAACGTGAATCGGGAGTATGAAAAGTATCCGAACTTTACGGCGGAGGAAAAGGTTCGCTTCGACACGCTGTGTGCGTTTTGCGTGAACTCACTGTTCTGGATGCACGAGAAGATGCTCGGTCGACCGAACACCGTCATGGATGACATTAAAGCGGATCTCGACCGGGTGCGGGAAGCGATGAAACGGTTGCAGACCATACACGATAACCTCACCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAAAGGTTCGTGCGGGCCGGGCTGTACGATGCTAACAACACGGAAAGCGACAAACAGAACGATGCACCACCAAACAAAAAGAAGCGCCGGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAGCACCCGGCCTGTGTGCTACTGGGGTAGGTACAATAAGAGATGTTGTATGTGGATAGACGAGATTTAAACATGTACTAAATAACGTAAGGCAGATGTCGTCAGGGATAATAAAACAAAG]




>consensus_3759#0
GACCCACGCGTCCGCGGACGCGTGGGCGCAAACACGCCGCACACGTTCGTTTTCGTAGAA
ATTGTATTATTTAAACTTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTT
CCTCCAGCCCCCCAAACATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATG
ATTATGGCGTGCTGAAGGGTGATCTCGTGTTCATACGCAACAACGAAAACCTCATGCAAG
CCATCGATCAGATACAGGAAACGCTGGCCAACGTGAATCGGGAGTATGAAAAGTATCCGA
ACTTTACGGCGGAGGAAAAGGTTCGCTTCGACACGCTGTGTGCGTTTTGCGTGAACTCAC
TGTTCTGGATGCACGAGAAGATGCTCGGTCGACCGAACACCGTCATGGATGACATTAAAG
CGGATCTCGACCGGGTGCGGGAAGCGATGAAACGGTTGCAGACCATACACGATAACCTCA
CCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAAAGGTTCGTGCGGGCCGGGCTGTACG
ATGCTAACAACACGGAAAGCGACAAACAGAACGATGCACCACCAAACAAAAAGAAGCGCC
GGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAGCACCCGGCCTGTGTGCTACTGGGGT
AGGTACAATAAGAGATGTTGTATGTGGATAGACGAGATTTAAACATGTACTAAATAACGT
AAGGCAGATGTCGTCAGGGATAATAAAACAAAG

consensusID : consensus_3759#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [ANTGCCGAGGCATCTGATGTTGGAGCTGGCGCAACATGCTGTTTTTTTTTTNTTTTTTTGGCCGGTGCATCGCATACACGCGGCACGCGTTCGCTTTCGTAGAAATTGTATTATTTAAGTTTCCTAATTATCTGCCACCGGCAAAAAGTGAATTTAAACCTTCCTCAGCCTCTAAACATGGTGAACGATATGGAAACGGATATAGGCACCCCCGTGGATGATTATGGCGTGTTGAAGTGGAGATCCTCGTTGTTCATACCCAACAACTGAAAACCTCATTGCAATGCCATCGATCAGATACATGGTAACGCCTGGCAACTGTGAATCTGGNGGAGTATTGAAAAGTATCCGAACTTATACCGGCGGAGTGCAAAAGTGGTGCGCTTCGACCACCGCTTGGTGTGCCGTNTTGCGGTGAAACCTCACTTGGTTCTTGGGATTGCACGAGAAAGGATGCTCGGGTCGACCCGAACACCGGCATTGGGATGGACCATTAAAGGCTGGATCTCGATAGAGTG]

[+] EMBL AL693456             [ANTGCCGAGGCATCTGATGTTGGAGCTGGCGCAACATGCTGTTTTTTTTTTNTTTTTTTGGCCGGTGCATCGCATACACGCGGCACGCGTTCGCTTTCGTAGAAATTGTATTATTTAAGTTTCCTAATTATCTGCCACCGGCAAAAAGTGAATTTAAACCTTCCTCAGCCTCTAAACATGGTGAACGATATGGAAACGGATATAGGCACCCCCGTGGATGATTATGGCGTGTTGAAGTGGAGATCCTCGTTGTTCATACCCAACAACTGAAAACCTCATTGCAATGCCATCGATCAGATACATGGTAACGCCTGGCAACTGTGAATCTGGNGGAGTATTGAAAAGTATCCGAACTTATACCGGCGGAGTGCAAAAGTGGTGCGCTTCGACCACCGCTTGGTGTGCCGTNTTGCGGTGAAACCTCACTTGGTTCTTGGGATTGCACGAGAAAGGATGCTCGGGTCGACCCGAACACCGGCATTGGGATGGACCATTAAAGGCTGGATCTCGATAGAGTG]




>consensus_3759#1
ANTGCCGAGGCATCTGATGTTGGAGCTGGCGCAACATGCTGTTTTTTTTTTNTTTTTTTG
GCCGGTGCATCGCATACACGCGGCACGCGTTCGCTTTCGTAGAAATTGTATTATTTAAGT
TTCCTAATTATCTGCCACCGGCAAAAAGTGAATTTAAACCTTCCTCAGCCTCTAAACATG
GTGAACGATATGGAAACGGATATAGGCACCCCCGTGGATGATTATGGCGTGTTGAAGTGG
AGATCCTCGTTGTTCATACCCAACAACTGAAAACCTCATTGCAATGCCATCGATCAGATA
CATGGTAACGCCTGGCAACTGTGAATCTGGNGGAGTATTGAAAAGTATCCGAACTTATAC
CGGCGGAGTGCAAAAGTGGTGCGCTTCGACCACCGCTTGGTGTGCCGTNTTGCGGTGAAA
CCTCACTTGGTTCTTGGGATTGCACGAGAAAGGATGCTCGGGTCGACCCGAACACCGGCA
TTGGGATGGACCATTAAAGGCTGGATCTCGATAGAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3759#0      --------------------------------------------GACCCACGCGTCCGCG 16
consensus_3759#1      ANTGCCGAGGCATCTGATGTTGGAGCTGGCGCAACATGCTGTTTTTTTTTTNTTTTTTTG 60
                                                                            *    *

consensus_3759#0      GACGCGTGGGCGCAAACACGCCGCACACGTTCGTTTTCGTAGAAATTGTATTATTTAAAC 76
consensus_3759#1      GCCGGTGCATCGCATACACGCGGCACGCGTTCGCTTTCGTAGAAATTGTATTATTTAAG- 119
                      * **      **** ****** **** ****** ************************  

consensus_3759#0      TTTCCTATTTATCTGCCACCGGCAAAAAGTGAATAAAAAACCTTCCTCCAGCCCCCCAAA 136
consensus_3759#1      TTTCCTAATTATCTGCCACCGGCAAAAAGTGAATTTAAA-CCTTCCTCAG--CCTCTAAA 176
                      ******* **************************  *** ********    ** * ***

consensus_3759#0      CATGGTGAACGATATGGAAACGGATACAGGCACCCCCGTGGATGATTATGGCGTGCTGAA 196
consensus_3759#1      CATGGTGAACGATATGGAAACGGATATAGGCACCCCCGTGGATGATTATGGCGTGTTGAA 236
                      ************************** **************************** ****

consensus_3759#0      G-GGTGATC-TCGT-GTTCATACGCAACAAC-GAAAACCTCAT-GCAA-GCCATCGATCA 250
consensus_3759#1      GTGGAGATCCTCGTTGTTCATACCCAACAACTGAAAACCTCATTGCAATGCCATCGATCA 296
                      * ** **** **** ******** ******* *********** **** ***********

consensus_3759#0      GATACA-GGAAACGCTGGCCAAC-GTGAATC---GGGAGTAT-GAAAAGTATCCGAACTT 304
consensus_3759#1      GATACATGGTAACGCCTGGCAACTGTGAATCTGGNGGAGTATTGAAAAGTATCCGAACTT 356
                      ****** ** *****  * **** *******    ******* *****************

consensus_3759#0      -TAC-GGCGGAG----GAAAAGGTTCGCTTCGACA--CGCT--GTGTGC-GTTTTGCG-T 352
consensus_3759#1      ATACCGGCGGAGTGCAAAAGTGGTGCGCTTCGACCACCGCTTGGTGTGCCGTNTTGCGGT 416
                       *** *******     **  *** *********   ****  ****** ** ***** *

consensus_3759#0      GAA--CTCACT--GTTCTGGA---TGCACGAGAA--GATGCTCGG-TCGACC-GAACACC 401
consensus_3759#1      GAAACCTCACTTGGTTCTTGGGATTGCACGAGAAAGGATGCTCGGGTCGACCCGAACACC 476
                      ***  ******  ***** *    **********  ********* ****** *******

consensus_3759#0      GTCAT--GGATGA--CATTAAAG--CGGATCTCGACCGGGTGCGGGAAGCGATGAAACGG 455
consensus_3759#1      GGCATTGGGATGGACCATTAAAGGCTGGATCTCGATAGAGTG------------------ 518
                      * ***  *****   ********   *********  * ***                  

consensus_3759#0      TTGCAGACCATACACGATAACCTCACCAAGCGGCCCCGTCTCGATCAGCCGGCCGCGCAA 515
consensus_3759#1      ------------------------------------------------------------
                                                                                  

consensus_3759#0      AGGTTCGTGCGGGCCGGGCTGTACGATGCTAACAACACGGAAAGCGACAAACAGAACGAT 575
consensus_3759#1      ------------------------------------------------------------
                                                                                  

consensus_3759#0      GCACCACCAAACAAAAAGAAGCGCCGGGAGAAGAAAGCCGAACCGGAATGAGTAGAGTAG 635
consensus_3759#1      ------------------------------------------------------------
                                                                                  

consensus_3759#0      CACCCGGCCTGTGTGCTACTGGGGTAGGTACAATAAGAGATGTTGTATGTGGATAGACGA 695
consensus_3759#1      ------------------------------------------------------------
                                                                                  

consensus_3759#0      GATTTAAACATGTACTAAATAACGTAAGGCAGATGTCGTCAGGGATAATAAAACAAAG 753
consensus_3759#1      ----------------------------------------------------------