These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence [GAATCCCCGAGTTATGAGGAGGTATTCAGGAGGAAATCCTTAACGACACCACCATCACCAACACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCACCTCGCTCGATGAGGATGACTGGAGCTACACGCTCAACCCGATCACGCCCCAGAAGCTGGAGGAGCTGAATGCGGCCCGGCCCGTGCGGATGAAGAACCCGAGCGGCTCGCGCAAGCGCCCGAAACCGGCGGAAGAGAAACAGGACAAGAAGGAGCGGAAAAACCAATACTCCACCACCACCTGCTACATCTGTGATACGCACCACGAGTCGATCGCGCAGCGGGACGACCACTTCCGCAACCACATCCACATGCTGCCGTACGAGTGCACGGAGTGTTTGGCCGATCCGCCCCCGGAGGACGCCGATTCGCCGCGGAAGGACCAGCCAGCAACGGAACATCCCACCCACATCGTGCTGCGCAGCGTCATCCAGCTGAACAGCCACATGATGATGCACGGTTTCCGCACAAGTGTGAGCACTGCTACCGGCGCTTCACCGACCGTGTATCTGCTGAAACCAACACCTGTTGGAACTANCACCAGGCAATCGAAGGAGGGTCTGACCGTGCCGAGTGGTGCGGCAAGCGGGTACTANTCCCGGCGCCCGGTTCCCAGACACCGTGNGGCGCCACAAGCACTCCGTCACGGAACGGTCAAGTTGCACGAGTCGGCTGCTTCGNTTCCGAAGCNTTTGCCCCCGAGATGTNCCACGGCNACCAGCACAATGCNCTATTCCGCTTTACCNCGGANGCTCACANTGGGTCACGCAGGCCAGTCGANTCGATAAAANTCNGAA] [+] EMBL AL932804 [GAATCCCCGAGTTATGAGGAGGTATTCAGGAGGAAATCCTTAACGACACCACCATCACCAACACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCACCTCGCTCGATGAGGATGACTGGAGCTACACGCTCAACCCGATCACGCCCCAGAAGCTGGAGGAGCTGAATGCGGCCCGGCCCGTGCGGATGAAGAACCCGAGCGGCTCGCGCAAGCGCCCGAAACCGGCGGAAGAGAAACAGGACAAGAAGGAGCGGAAAAACCAATACTCCACCACCACCTGCTACATCTGTGATACGCACCACGAGTCGATCGCGCAGCGGGACGACCACTTCCGCAACCACATCCACATGCTGCCGTACGAGTGCACGGAGTGTTTGGCCGATCCGCCCCCGGAGGACGCCGATTCGCCGCGGAAGGACCAGCCAGCAACGGAACATCCCACCCACATCGTGCTGCGCAGCGTCATCCAGCTGAACAGCCACATGATGATGCACGGTTTCCGCACAAGTGTGAGCACTGCTACCGGCGCTTCACCGACCGTGTATCTGCTGAAACCAACACCTGTTGGAACTANCACCAGGCAATCGAAGGAGGGTCTGACCGTGCCGAGTGGTGCGGCAAGCGGGTACTANTCCCGGCGCCCGGTTCCCAGACACCGTGNGGCGCCACAAGCACTCCGTCACGGAACGGTCAAGTTGCACGAGTCGGCTGCTTCGNTTCCGAAGCNTTTGCCCCCGAGATGTNCCACGGCNACCAGCACAATGCNCTATTCCGCTTTACCNCGGANGCTCACANTGGGTCACGCAGGCCAGTCGANTCGATAAAANTCNGAA] consensusID : consensus_3760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [AAGAATTGCCCTGAGGTTACACGTGCCGCTNGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCCACCTCGCTCGATGAGTGATGACTGGAGCTACACGCTCAACCCGATCACGCCCCAGAAGCTGGAGTGAGCTGAATGCGTGCCCTGGCCCTGTGCTGTGATGAATGAACCCTGAGCTGGCTCGCTGCAATGCTGCCCGAAACCTGGCTGGAATGAGAAACATGGACAATGAAGTGAGCTGGAAAAACCAATACTCCACCACCACTGTCTACATCTGTGATACGCACCACGAGTCGATCTGCTGCAGACTGNGGACTGACGCACATTACCTGACAAAGACANCGATCCCAACGATTGCTTGCTCNGGTAACGAAGATTGCACGNGAGATTGTTTTGGGACCGAGTCCCGGCCCCCCCTGGTGAAGGAACGCCCGACTTCCGCCCCGGCTGGAAAGTGACCCAAGGCCAGGCAAAACTGGGAAAACCAATTCCCCCAAANCGCAACAACTTTCGGGGTNGACCATTGCGGCCAGAGGAAGGGTTTCAAATACCCCAAGGCGTTTGANAATCATGGGCGCACCNAATTGCATCTGAATTTGCCACANGNGCGACTATATTACTCCTGNCNAACAAAGTTTNAGNTNGAATGCNCAACACTGGCGTAACCCCAGGGGTCGGGCCATTTCAACACCGAAAACCCGGGGTGNGTATATTCCTATNCTA] [+] EMBL AL693462 [AAGAATTGCCCTGAGGTTACACGTGCCGCTNGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCCACCTCGCTCGATGAGTGATGACTGGAGCTACACGCTCAACCCGATCACGCCCCAGAAGCTGGAGTGAGCTGAATGCGTGCCCTGGCCCTGTGCTGTGATGAATGAACCCTGAGCTGGCTCGCTGCAATGCTGCCCGAAACCTGGCTGGAATGAGAAACATGGACAATGAAGTGAGCTGGAAAAACCAATACTCCACCACCACTGTCTACATCTGTGATACGCACCACGAGTCGATCTGCTGCAGACTGNGGACTGACGCACATTACCTGACAAAGACANCGATCCCAACGATTGCTTGCTCNGGTAACGAAGATTGCACGNGAGATTGTTTTGGGACCGAGTCCCGGCCCCCCCTGGTGAAGGAACGCCCGACTTCCGCCCCGGCTGGAAAGTGACCCAAGGCCAGGCAAAACTGGGAAAACCAATTCCCCCAAANCGCAACAACTTTCGGGGTNGACCATTGCGGCCAGAGGAAGGGTTTCAAATACCCCAAGGCGTTTGANAATCATGGGCGCACCNAATTGCATCTGAATTTGCCACANGNGCGACTATATTACTCCTGNCNAACAAAGTTTNAGNTNGAATGCNCAACACTGGCGTAACCCCAGGGGTCGGGCCATTTCAACACCGAAAACCCGGGGTGNGTATATTCCTATNCTA] consensusID : consensus_3760#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGCAGCAATCGATTCTCAACATGTCTGCGGAATGTTCTGACGCGTCCACCGACCCGCGGCTGCTGCAGTATCGGGACCTGTTTTGTCGAATATGCCTTCAGTACAGCAAAGGGGCGCTGATCCCGATTGGGGCGGAGATAAAGAAAACCACCCTGCTGGACATGTTTATACAGCTCACCACTTTTGAGCTGGATCACAATGACGCGTTTCCAAGGTTCATGTGCGAGCAGTGCGTCAGCAAGCTGACGCTGGCGTACAGCATCCGGGAGGAGTTCATCTCGCAGACCGATCTGCTGCTGAAGCTGGTGGTGCAGAAGCAAATCATTAAGTACTACGAGCAATTTCCGCTGGAACCGAAGGTTCAGGCACCGCCCAAGGTAATACAGCCGAGCGTCCATGCCCCGTTCCGGGAGCTAAAGCCCACCCGGGTGGCGAAGCCAACCGGCGGAGTGCCGGTGGTAAAACCGCAGCAGATGTTAATTCAGGAAAGCATCAAAGATGAAACGGTAGAGGAATTGGATGTAGATGAGGAGGTAATTCAGGAGGAAATCCTTAACGACACCACCACCACCACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCCACCTCGCTCGATG] [+] EMBL BM586997 [CCGCAGCAATCGATTCTCAACATGTCTGCGGAATGTTCTGACGCGTCCACCGACCCGCGGCTGCTGCAGTATCGGGACCTGTTTTGTCGAATATGCCTTCAGTACAGCAAAGGGGCGCTGATCCCGATTGGGGCGGAGATAAAGAAAACCACCCTGCTGGACATGTTTATACAGCTCACCACTTTTGAGCTGGATCACAATGACGCGTTTCCAAGGTTCATGTGCGAGCAGTGCGTCAGCAAGCTGACGCTGGCGTACAGCATCCGGGAGGAGTTCATCTCGCAGACCGATCTGCTGCTGAAGCTGGTGGTGCAGAAGCAAATCATTAAGTACTACGAGCAATTTCCGCTGGAACCGAAGGTTCAGGCACCGCCCAAGGTAATACAGCCGAGCGTCCATGCCCCGTTCCGGGAGCTAAAGCCCACCCGGGTGGCGAAGCCAACCGGCGGAGTGCCGGTGGTAAAACCGCAGCAGATGTTAATTCAGGAAAGCATCAAAGATGAAACGGTAGAGGAATTGGATGTAGATGAGGAGGTAATTCAGGAGGAAATCCTTAACGACACCACCACCACCACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCCACCTCGCTCGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3760#0 GAATCCCCGAGTTATGAGGAGGTATTCAGGAGGAAATCCTTAACGACACCACCATCACCA 60 consensus_3760#1 -----------------------------------------AAGAATTGCCCTGAGGTTA 19 consensus_3760#2 ------------------------------------------------------------ consensus_3760#0 ACACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTG-GGATTCG 119 consensus_3760#1 -CAC-GTGCCGCTNGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTG-GGATTCG 76 consensus_3760#2 ------------------------CCGCAGCAATCGATTCTCAACATGTCTGCGGAATGT 36 ** * **** ** * * *** *** * consensus_3760#0 TCCAGCACGGC-ACCTCGCTCGATGAG-GATG-ACTGGAGCTACACGCTCAACCCGATCA 176 consensus_3760#1 TCCAGCACGGCCACCTCGCTCGATGAGTGATG-ACTGGAGCTACACGCTCAACCCGATCA 135 consensus_3760#2 TCTGACGCGTCCAC--CGACCCGCGGCTGCTGCAGTATCGGGACCTGTTTTGTC-GAATA 93 ** * ** * ** ** * * * ** * * * ** * * * ** * consensus_3760#0 CGCCCCAGAAGCTGGAG-GAGCTGAATGCG-GCCCGGCCCGTGCG----GATGAA-GAAC 229 consensus_3760#1 CGCCCCAGAAGCTGGAGTGAGCTGAATGCGTGCCCTGGCCCTGTGCTGTGATGAATGAAC 195 consensus_3760#2 TGCCTTCAGTACAGCAAAGGGGCG---CTGATCCCGATTGGGGCG--GAGATAAAGAAAA 148 *** * * * * * * * *** * * *** ** ** consensus_3760#0 CC-GAGC-GGCTCGC-GCAAG--CGCCCGAAACC--GGCGGAA--GAGAAACA-GGACAA 279 consensus_3760#1 CCTGAGCTGGCTCGCTGCAATGCTGCCCGAAACCT-GGCTGGAATGAGAAACATGGACAA 254 consensus_3760#2 CC--ACCCTGCTGGACATGTTTATACAGCTCACCACTTTTGAGCTGGATCACAATGACGC 206 ** * * *** * * *** * * *** *** consensus_3760#0 -GAAG-GAGC-GGAAAAACCAATACTCCACCACCA--CCTGCTACATC-TGTGATACGCA 333 consensus_3760#1 TGAAGTGAGCTGGAAAAACCAATACTCCACCACCA--CTGTCTACATC-TGTGATACGCA 311 consensus_3760#2 GTTTCCAAGGTTCATGTGCGAGCAGTGCGTCAGCAAGCTGACGCTGGCGTACAGCATCCG 266 ** * * * * * * ** ** * * * * * * consensus_3760#0 CCACGAGTCGATCGCGCAG-CGGGACGACCACTTCCGCAACCACATCCACATGCTGCCGT 392 consensus_3760#1 CCACGAGTCGATC-TGCTG-CAGACTGNGGACTGACGCA--CATTACCTGACAAAGACAN 367 consensus_3760#2 GGAGGAGTTCATCTCGCAGACCGATCTGCTGCTGAAGCTGGTGGTGCAGAAGCAAATCAT 326 * **** *** ** * * * ** ** * * * consensus_3760#0 ACGAGTGCACGGAGTGTTTGGCCGATCCGCCCCCGGAGGACGCCGATTCGCCGCGGAAGG 452 consensus_3760#1 -CGATCCCAACGATTGCTTG-----------CTCNGGTAACGAAGATTGCACGNG---AG 412 consensus_3760#2 -TAAGTACTACGAGCAATTT----------CCGCTGGAACCGAAGGTTCAGGCACCGCCC 375 * * ** ** * * * ** * ** consensus_3760#0 ACCAGCCAGCAACGGAACATCCCACCCACATCGTGCTGCGCAGCGTCATCCAGCTGAAC- 511 consensus_3760#1 ATTGTTTTGGGACCGA--GTCCCGGCCCCCCCTGGTGAAGGAACGCCCGACTTCCGCCCC 470 consensus_3760#2 AAGGTAATACAGCCGAGCGTCCATGCCCCGTTCCGGGAGCTAAAGCC---CACCCGGGT- 431 * * ** *** ** * * * * * * * * consensus_3760#0 AGCCACATGATGATGCACGGTTTCCGCACAAGTGTGAGCACTGCTACCGGCGCTTCACCG 571 consensus_3760#1 GGCTGGAAAGTGACCCAAGGCCAG-GCAAAACTGGGAAAACCAATTCC-------CCCAA 522 consensus_3760#2 GGC--GAAGCCAACCGGCGGA----GTGCCGGTGGTAAAACCG------------CAGCA 473 ** * * ** * ** * ** * consensus_3760#0 ACCGTGTATCTGCTGAAACCAACACCTGTTGGAACTANCACCAGGCAATCGAAGGAGGGT 631 consensus_3760#1 ANCG---------------CAACAACTTTCGGGGTNGACCATTGCGGCCAGAGGAAGGGT 567 consensus_3760#2 GATGT-----------------TAATTCAGGAAAGCATCAAAGATGAAACGGTAGAGGAA 516 * * * * * * *** consensus_3760#0 CT-GACCGTGCCGAGTGGTGCGGCAAGC--GGGTACTANTCCCGGCGCCCGGTTCCCAGA 688 consensus_3760#1 TTCAAATACCCCAAGGCGTTTGANAATCATGGGCGCACCNAATTGCATCTGAATTTGCCA 627 consensus_3760#2 TT-GGATGT---AGATGAGGAGGTAATTCAGGAGGAAATCCTTAACGACACCACCACCAC 572 * * ** ** * * consensus_3760#0 CACCGTGNGGCGCCACAAGCACTCCGTCACGGAACGGTCAAGTTGCACGAGTCGGCTGCT 748 consensus_3760#1 CAN-GNGCGAC--TATATTACTCCTGNCNAACAAAGTTTNAGNT---NGAATGCNCAACA 681 consensus_3760#2 CACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAG--ACGACTGGGATTCG 630 ** * * * * * * * ** * * consensus_3760#0 TCGNTTCCGAAGCNTTTGCCCCCGAGATGTNCCACGGCNACCAGCACAATGCNC-TATTC 807 consensus_3760#1 CTGG---CGTAACCCCAGGGGTCGGGCCATTTCAACACCGAAAACCCGGGGTGNGTATAT 738 consensus_3760#2 TCCAG--CACGGCCACCTCGCTCGATG--------------------------------- 655 * * ** consensus_3760#0 CGCTTTACCNCGGANGCTCACANTGGGTCACGCAGGCCAGTCGANTCGATAAAANTCNGA 867 consensus_3760#1 TCCTATNCTA-------------------------------------------------- 748 consensus_3760#2 ------------------------------------------------------------ consensus_3760#0 A 868 consensus_3760#1 - consensus_3760#2 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||