cluster # 3764

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Anopheles gambiae
cluster # 3764 cluster # 3764 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3764#0 length = 891 sequences # 2

consensus_3764#1 length = 381 sequences # 1

consensusID : consensus_3764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 891
fasta sequence

                              [CCGCGGACGCGTGGGAAAAATCGTAAAACAGCAACCGTGCCGAGTGTTTCCGACCACACCAAACGGGAAACAGGATCTAAAATTCATTTCACACGCTGTACGCTGTTAGTTTGCCGCCTCGTAGAGTGTTTTCTTTACTAGTTTTCCGATTCGGCATATAAACAAACCAGTAGTGCGTCGTGTACAAAGGAAAGGTAGCTAGGCGGGCACAGGTGGTGGACGGAAGGTGGCGCAATAAAGAAAATCATGCATCCGGATCGCCGATTGTATCTTCTGGTGCTGTATGTGTTTGCACTACAGCTCCGGACGTCGATAGGAGGCAATCCGCGCGACAGTGCCCAGGTCAGTGCCCGGAATGTGGCGAGCAATGGCACCAGCAGCAGTAGCAACAGTAGCGCCAGAAGCAACAGTAGCACCAACATTGCCTGTCGGGAGGATGTGCTCGACCAATGTCCCCCGAATGCGTCATGTGATAAGGGTCAGTGTGTTTGTCTTTTCGGCTACAAGCTGAATGCCGCGTATCACGGGAACAACGCCTCTGCCAGCAGTCCGCAGCCAGCCATGCCTGTTCCGAGCACCAACGCTGCCTCCATTACGTACTGTTTGCCGGACGAAACCGGCGCCAAAGCAACCTCCCTGCACGGAGGACCTGGCAGCAATAGCAGCAAAGCGCCGGGCGACGGAGCTGCTGCCGAAAGGAGATGGTGGAAAGGCGGGACAGTTGCCCCTGCGGGAACCGGTCGCAGCTCATCACATCCTCGGTGGCGTGCTGATCCCACTCGCCTTCGTCGTGATACTGATCGGCAGTGCCATCCTCGCGAAGCGTACAGATCTCTGGGCCCGGCTACGGCAACGGTTCCTCGCGCACCGGAACCGCCACCGACGGCGGCC]

[+] EMBL BM606688             [CCGCGGACGCGTGGGAAAAATCGTAAAACAGCAACCGTGCCGAGTGTTTCCGACCACACCAAACGGGAAACAGGATCTAAAATTCATTTCACACGCTGTACGCTGTTAGTTTGCCGCCTCGTAGAGTGTTTTCTTTACTAGTTTTCCGATTCGGCATATAAACAAACCAGTAGTGCGTCGTGTACAAAGGAAAGGTAGCTAGGCGGGCACAGGTGGTGGACGGAAGGTGGCGCAATAAAGAAAATCATGCATCCGGATCGCCGATTGTATCTTCTGGTGCTGTATGTGTTTGCACTACAGCTCCGGACGTCGATAGGAGGCAATCCGCGCGACAGTGCCCAGGTCAGTGCCCGGAATGTGGCGAGCAATGGCACCAGCAGCAGTAGCAACAGTAGCGCCAGAAGCAACAGTAGCACCAACATTGCCTGTCGGGAGGATGTGCTCGACCAATGTCCCCCGAATGCGTCATGTGATAAGGGTCAGTGTGTTTGTCTTTTCGGCTACAAGCTGAATGCCGCGTATCACGGGAACAACGCCTCTGCCAGCAGTCCGCAGCCAGCCATGCCTGTTCCGAGCACCAACGCTGCCTCCATTACGTACTGTTTGCCGGACGAAACCGGCGCCAAAGCAACCTCCCTGCACGGAGGACCTGGCAGCAATAGCAGCAAAGCGCCGGGCGACGGAGCTGCTGCCGAAAGGAGATGGT                                                                                                                                                                                         ]
[+] EMBL BM613561             [                                                                                                                                                                                                                       ccGGACGGAAGGTGGCGCAATAAAGAAAATCATGCATCCGGATCGCCGATTGTATCTTTTGGTGCTGTATGTGTTCGCGCTACAGCTCCGAACGTCGATAGGAGGCAATCCGCGCGACAGTGCCCAGGTCAGTGCCCGGAATGTGGCGAGCAATGGCACCAGTAGCAGTAGCAGCAGTAGCGCCAGAAGCAACAGTAGCACCAACATTGCCTGTCGGGAGGATGTGCTCGACCAATGTCCCCCGAATGCGTCATGTGATAAAGGTCAGTGTGTTTGTCTTTTCGGCTACAAGCTAAATGCCGCGTATCACGGGAAGAACGCCTCTGCCAGCAGTCCGCCGCCAGCCATGCCTGTTCCGAGCACCAACGCTGCCTCCATTACGTACTGTTTGCCGGACGAAACCGGCGCCAAAGCAACCTCGCTGCACGGAGGACCCGGCAGCAATAGCAGCAAAGCGCCGGGCGACGGAGCTGCTGCCG AAGGAGATGGTGGAAAGGCGGGACAGTTGCCCCTGCGGGAACCGGTCGCAGCTCATCACATCCTCGGTGGCGTGCTGATCCCACTCGCCTTCGTCGTGATACTGATCGGCAGTGCCATCCTCGCGAAGCGTACAGATCTCTGGGCCCGGCTACGGCAACGGTTCCTCGCGCACCGGAACCGCCACCGACGGCGGCC]




>consensus_3764#0
CCGCGGACGCGTGGGAAAAATCGTAAAACAGCAACCGTGCCGAGTGTTTCCGACCACACC
AAACGGGAAACAGGATCTAAAATTCATTTCACACGCTGTACGCTGTTAGTTTGCCGCCTC
GTAGAGTGTTTTCTTTACTAGTTTTCCGATTCGGCATATAAACAAACCAGTAGTGCGTCG
TGTACAAAGGAAAGGTAGCTAGGCGGGCACAGGTGGTGGACGGAAGGTGGCGCAATAAAG
AAAATCATGCATCCGGATCGCCGATTGTATCTTCTGGTGCTGTATGTGTTTGCACTACAG
CTCCGGACGTCGATAGGAGGCAATCCGCGCGACAGTGCCCAGGTCAGTGCCCGGAATGTG
GCGAGCAATGGCACCAGCAGCAGTAGCAACAGTAGCGCCAGAAGCAACAGTAGCACCAAC
ATTGCCTGTCGGGAGGATGTGCTCGACCAATGTCCCCCGAATGCGTCATGTGATAAGGGT
CAGTGTGTTTGTCTTTTCGGCTACAAGCTGAATGCCGCGTATCACGGGAACAACGCCTCT
GCCAGCAGTCCGCAGCCAGCCATGCCTGTTCCGAGCACCAACGCTGCCTCCATTACGTAC
TGTTTGCCGGACGAAACCGGCGCCAAAGCAACCTCCCTGCACGGAGGACCTGGCAGCAAT
AGCAGCAAAGCGCCGGGCGACGGAGCTGCTGCCGAAAGGAGATGGTGGAAAGGCGGGACA
GTTGCCCCTGCGGGAACCGGTCGCAGCTCATCACATCCTCGGTGGCGTGCTGATCCCACT
CGCCTTCGTCGTGATACTGATCGGCAGTGCCATCCTCGCGAAGCGTACAGATCTCTGGGC
CCGGCTACGGCAACGGTTCCTCGCGCACCGGAACCGCCACCGACGGCGGCC

consensusID : consensus_3764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [CCGAAACGACGGTCGCCTCTTTCTTCTTTCGCCACAGACGATAATGATAACGAAATAATCTTAAAAAAACAACTGTGCCGAGTGTTTCCGACCACACCAAACGGGAAACAGGATCTAAAATTCATTTCACACACTGTACGCTGTTAGTTTGCGCCTCGTATAGTGTTTTCTTTACTAGTTTTCCGATTCGGCATATAAACAAACCAGTAGTGCGTCGTGTACAAAGGAAAGGTAGCTAGGCGGGCACAGGTGGTGGACGGAAGGTGGCGCAATAAAGAAAATCATGCATCCGGATCGCCGATTGTATCTTTTGGTGCTGTATGTGTTCGCGCTACAGCTCCGAACGTCTATATGAGGCAATCCGCGCGACAGTGCCCAGGT]

[+] EMBL BM643193             [CCGAAACGACGGTCGCCTCTTTCTTCTTTCGCCACAGACGATAATGATAACGAAATAATCTTAAAAAAACAACTGTGCCGAGTGTTTCCGACCACACCAAACGGGAAACAGGATCTAAAATTCATTTCACACACTGTACGCTGTTAGTTTGCGCCTCGTATAGTGTTTTCTTTACTAGTTTTCCGATTCGGCATATAAACAAACCAGTAGTGCGTCGTGTACAAAGGAAAGGTAGCTAGGCGGGCACAGGTGGTGGACGGAAGGTGGCGCAATAAAGAAAATCATGCATCCGGATCGCCGATTGTATCTTTTGGTGCTGTATGTGTTCGCGCTACAGCTCCGAACGTCTATATGAGGCAATCCGCGCGACAGTGCCCAGGT]




>consensus_3764#1
CCGAAACGACGGTCGCCTCTTTCTTCTTTCGCCACAGACGATAATGATAACGAAATAATC
TTAAAAAAACAACTGTGCCGAGTGTTTCCGACCACACCAAACGGGAAACAGGATCTAAAA
TTCATTTCACACACTGTACGCTGTTAGTTTGCGCCTCGTATAGTGTTTTCTTTACTAGTT
TTCCGATTCGGCATATAAACAAACCAGTAGTGCGTCGTGTACAAAGGAAAGGTAGCTAGG
CGGGCACAGGTGGTGGACGGAAGGTGGCGCAATAAAGAAAATCATGCATCCGGATCGCCG
ATTGTATCTTTTGGTGCTGTATGTGTTCGCGCTACAGCTCCGAACGTCTATATGAGGCAA
TCCGCGCGACAGTGCCCAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3764#0      -------------------------------CCGCGGACG-------CGTGGGAAAAATC 22
consensus_3764#1      CCGAAACGACGGTCGCCTCTTTCTTCTTTCGCCACAGACGATAATGATAACGAAATAATC 60
                                                     ** * ****           * ** ****

consensus_3764#0      GTAAAACAGCAACCGTGCCGAGTGTTTCCGACCACACCAAACGGGAAACAGGATCTAAAA 82
consensus_3764#1      TTAAAAAAACAACTGTGCCGAGTGTTTCCGACCACACCAAACGGGAAACAGGATCTAAAA 120
                       ***** * **** **********************************************

consensus_3764#0      TTCATTTCACACGCTGTACGCTGTTAGTTTGCCGCCTCGTAGAGTGTTTTCTTTACTAGT 142
consensus_3764#1      TTCATTTCACACACTGTACGCTGTTAGTTTGC-GCCTCGTATAGTGTTTTCTTTACTAGT 179
                      ************ ******************* ******** ******************

consensus_3764#0      TTTCCGATTCGGCATATAAACAAACCAGTAGTGCGTCGTGTACAAAGGAAAGGTAGCTAG 202
consensus_3764#1      TTTCCGATTCGGCATATAAACAAACCAGTAGTGCGTCGTGTACAAAGGAAAGGTAGCTAG 239
                      ************************************************************

consensus_3764#0      GCGGGCACAGGTGGTGGACGGAAGGTGGCGCAATAAAGAAAATCATGCATCCGGATCGCC 262
consensus_3764#1      GCGGGCACAGGTGGTGGACGGAAGGTGGCGCAATAAAGAAAATCATGCATCCGGATCGCC 299
                      ************************************************************

consensus_3764#0      GATTGTATCTTCTGGTGCTGTATGTGTTTGCACTACAGCTCCGGACGTCGATAGGAGGCA 322
consensus_3764#1      GATTGTATCTTTTGGTGCTGTATGTGTTCGCGCTACAGCTCCGAACGTCTATATGAGGCA 359
                      *********** **************** ** *********** ***** *** ******

consensus_3764#0      ATCCGCGCGACAGTGCCCAGGTCAGTGCCCGGAATGTGGCGAGCAATGGCACCAGCAGCA 382
consensus_3764#1      ATCCGCGCGACAGTGCCCAGGT-------------------------------------- 381
                      **********************                                      

consensus_3764#0      GTAGCAACAGTAGCGCCAGAAGCAACAGTAGCACCAACATTGCCTGTCGGGAGGATGTGC 442
consensus_3764#1      ------------------------------------------------------------
                                                                                  

consensus_3764#0      TCGACCAATGTCCCCCGAATGCGTCATGTGATAAGGGTCAGTGTGTTTGTCTTTTCGGCT 502
consensus_3764#1      ------------------------------------------------------------
                                                                                  

consensus_3764#0      ACAAGCTGAATGCCGCGTATCACGGGAACAACGCCTCTGCCAGCAGTCCGCAGCCAGCCA 562
consensus_3764#1      ------------------------------------------------------------
                                                                                  

consensus_3764#0      TGCCTGTTCCGAGCACCAACGCTGCCTCCATTACGTACTGTTTGCCGGACGAAACCGGCG 622
consensus_3764#1      ------------------------------------------------------------
                                                                                  

consensus_3764#0      CCAAAGCAACCTCCCTGCACGGAGGACCTGGCAGCAATAGCAGCAAAGCGCCGGGCGACG 682
consensus_3764#1      ------------------------------------------------------------
                                                                                  

consensus_3764#0      GAGCTGCTGCCGAAAGGAGATGGTGGAAAGGCGGGACAGTTGCCCCTGCGGGAACCGGTC 742
consensus_3764#1      ------------------------------------------------------------
                                                                                  

consensus_3764#0      GCAGCTCATCACATCCTCGGTGGCGTGCTGATCCCACTCGCCTTCGTCGTGATACTGATC 802
consensus_3764#1      ------------------------------------------------------------
                                                                                  

consensus_3764#0      GGCAGTGCCATCCTCGCGAAGCGTACAGATCTCTGGGCCCGGCTACGGCAACGGTTCCTC 862
consensus_3764#1      ------------------------------------------------------------
                                                                                  

consensus_3764#0      GCGCACCGGAACCGCCACCGACGGCGGCC 891
consensus_3764#1      -----------------------------