cluster # 3783

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Anopheles gambiae
cluster # 3783 cluster # 3783 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3783#0 length = 673 sequences # 2

consensus_3783#1 length = 119 sequences # 1

consensusID : consensus_3783#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 673
fasta sequence

                              [CCGCATCCTAACCCAACCTCAAGAGGGGCAAAGTGAGAGTGACAAGCTAACAAGGGTTCTGCCACCAACCAAACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAGAAAAACGTGTGCAACAAATCAAATCCTTATCGTTCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCGGTCCGGTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATCCGAGCACGAGCAC-AAAAGCAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCCAGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTGGGGATTTCTACCGCGATCGGGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCGGCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCCGGTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGT-ACGGGGCGCAGTACTGGATCATCGCCCCGACCATGATCCTCATCACGATGATCATCAACTACATCTTTCGTGCCGGTGTTTTACAACAACCACA]

[+] EMBL BM605535             [CCGCATCCTAACCCAACCTCAAGAGGGGCAAAGTGAGAGTGACAAGCTAACAAGGGTTCTGCCACCAACCAAACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAGAAAAACGTGTGCAACAAATCAAATCCTTATCGTTCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCGGTCCGGTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATCCGAGCACGAGCAC AAAAGCAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCCAGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTGGGGATTTCTACCGCGATCGGGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCGGCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCCGGTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGT ACGGGGCGCAGTACTGGATCATCGCCCCGACCATGATCCTCATCACGATGATCATCAACTACATCTTTCGTGCCGGTGTTTTACAACAACCACA]
[+] EMBL BM607289             [                                                                     ccgACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAAAAAAACGTGTGCAACAAATCAAATCCTTATCGTCCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCGGTCCGTTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATCCGAGCACGAGCACAAAAAAAAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCCAGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTTGGGATTTCTACCGCGATCGGGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCGGCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCTGGTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGTAACGGGGCGCAGTACTGGATCATCGCCCCGACCATGATCCTCAT                                                   ]




>consensus_3783#0
CCGCATCCTAACCCAACCTCAAGAGGGGCAAAGTGAGAGTGACAAGCTAACAAGGGTTCT
GCCACCAACCAAACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAGAAAAACG
TGTGCAACAAATCAAATCCTTATCGTTCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTT
GGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCG
GTCCGGTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATC
CGAGCACGAGCACAAAAGCAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCC
AGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTGGGGATTTCTACCGCGATCG
GGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCG
GCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCCG
GTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGTACGGGGCGCAGTACTGGATCA
TCGCCCCGACCATGATCCTCATCACGATGATCATCAACTACATCTTTCGTGCCGGTGTTT
TACAACAACCACA

consensusID : consensus_3783#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [TCAAATCCTTATCTTTCAGCGGCTGCACAGTATCGGCTTTCTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCCTCCCAGCTGGCCCCGCTCGGTCGTCGTGCCGGGGCTGTTTTTGTT]

[+] EMBL CNS096OV             [TCAAATCCTTATCTTTCAGCGGCTGCACAGTATCGGCTTTCTGTTGTTTGGTGTCTTCGCTGCCTGCCTGTTCCTCCCAGCTGGCCCCGCTCGGTCGTCGTGCCGGGGCTGTTTTTGTT]




>consensus_3783#1
TCAAATCCTTATCTTTCAGCGGCTGCACAGTATCGGCTTTCTGTTGTTTGGTGTCTTCGC
TGCCTGCCTGTTCCTCCCAGCTGGCCCCGCTCGGTCGTCGTGCCGGGGCTGTTTTTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3783#0      CCGCATCCTAACCCAACCTCAAGAGGGGCAAAGTGAGAGTGACAAGCTAACAAGGGTTCT 60
consensus_3783#1      ------------------------------------------------------------
                                                                                  

consensus_3783#0      GCCACCAACCAAACCAAACCCCCCAAAACCCAAGAGCCAGCAATCACACACAGAAAAACG 120
consensus_3783#1      ------------------------------------------------------------
                                                                                  

consensus_3783#0      TGTGCAACAAATCAAATCCTTATCGTTCAGCGGCTGCACAGTATCGGCTTTTTGTTGTTT 180
consensus_3783#1      -----------TCAAATCCTTATCTTTCAGCGGCTGCACAGTATCGGCTTTCTGTTGTTT 49
                                 ************* ************************** ********

consensus_3783#0      GGTGTCTTCGCTGCCTGCCTGTTCATCCAAGCAGGCCCAGCACGGACGAGCGTTCTATCG 240
consensus_3783#1      GGTGTCTTCGCTGCCTGCCTGTTCCTCCCAGCTGGCCCCGCTCGGTCGT-CGTGCCGGGG 108
                      ************************ *** *** ***** ** *** **  *** *    *

consensus_3783#0      GTCCGGTCGATCAGTCTTGAGTGTCCCGGCGTCCCAGTCGGTCCAGTGTCCAGAGTAATC 300
consensus_3783#1      CTGTTTTTGTT------------------------------------------------- 119
                       *    * * *                                                 

consensus_3783#0      CGAGCACGAGCACAAAAGCAACAACGATGGTGAAATCAATCACGGCCAATCCGCAGGGCC 360
consensus_3783#1      ------------------------------------------------------------
                                                                                  

consensus_3783#0      AGTTCTCGGTCGAGGACTACGCGGTGTTTACGATCATGCTGGGGATTTCTACCGCGATCG 420
consensus_3783#1      ------------------------------------------------------------
                                                                                  

consensus_3783#0      GGGTGTACTTTGGCTTTTTCCAGAAGAAGAAAAACCAAACCACCGAGGAGTATCTGCTCG 480
consensus_3783#1      ------------------------------------------------------------
                                                                                  

consensus_3783#0      GCGGGCGGAAGATGAAAACGTTCCCGATCGCGATATCGCTGATCGCAAGCCAACTGTCCG 540
consensus_3783#1      ------------------------------------------------------------
                                                                                  

consensus_3783#0      GTGTGTCCATCATGTCGGTTCCGGCGGAAATGTACTCGTACGGGGCGCAGTACTGGATCA 600
consensus_3783#1      ------------------------------------------------------------
                                                                                  

consensus_3783#0      TCGCCCCGACCATGATCCTCATCACGATGATCATCAACTACATCTTTCGTGCCGGTGTTT 660
consensus_3783#1      ------------------------------------------------------------
                                                                                  

consensus_3783#0      TACAACAACCACA 673
consensus_3783#1      -------------