cluster # 3785

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Anopheles gambiae
cluster # 3785 cluster # 3785 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3785#0 length = 727 sequences # 1

consensus_3785#1 length = 721 sequences # 2

consensusID : consensus_3785#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 727
fasta sequence

                              [AGGTTAAACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTATNCGTACGAAAGCGANGATACTAGTAGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTACGAAGTGCGCCACGTGTACTACACGCCGAACGCGCGCACGTACCGACGGGNAACTACAGCGGCAAACCATATACTGCATACACGTACCGAGANACTTGCTACGAGTGTATGTGGGAAGGATTTCGGGTACCATTACTATTACAATCGGCACATGCTGACGGTGCACAACATTAAGACGAATGCAGCGGGTCAAGATACCCGNANAGTGGGCACNGCTTGGCTAGCAGCACAAGATATANTACGGCGCAANNTAGCTGCTACCNTACGAGCGAGGATACGTGAAATNGGTGTTGTAGTAGTNGTAGTTCCGTGTANGTACCCCACATACNNCCAGGGAATATATTNGGCAGGTAATAATAAGGCCAGNTACCACAGGCTTATANGGTNGTAAACNTNGGACTAGGCCCTNGGGGCGACCTTAAGNAAGCATAGGACGCGGATTGTGGACACAGCCANGNGGCTTACCTTAGGTATGATGGGTACACCCCGGGGTTGGGCACCATTNAACNGGGAAAAACGGGTTGGGNAACGGAAAAACCGGTTNNTCCTANTAGCCTCCCTATATCAATCAGANAAAAACACACCAATACTNTANGCN]

[+] EMBL AL693932             [AGGTTAAACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTATNCGTACGAAAGCGANGATACTAGTAGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTACGAAGTGCGCCACGTGTACTACACGCCGAACGCGCGCACGTACCGACGGGNAACTACAGCGGCAAACCATATACTGCATACACGTACCGAGANACTTGCTACGAGTGTATGTGGGAAGGATTTCGGGTACCATTACTATTACAATCGGCACATGCTGACGGTGCACAACATTAAGACGAATGCAGCGGGTCAAGATACCCGNANAGTGGGCACNGCTTGGCTAGCAGCACAAGATATANTACGGCGCAANNTAGCTGCTACCNTACGAGCGAGGATACGTGAAATNGGTGTTGTAGTAGTNGTAGTTCCGTGTANGTACCCCACATACNNCCAGGGAATATATTNGGCAGGTAATAATAAGGCCAGNTACCACAGGCTTATANGGTNGTAAACNTNGGACTAGGCCCTNGGGGCGACCTTAAGNAAGCATAGGACGCGGATTGTGGACACAGCCANGNGGCTTACCTTAGGTATGATGGGTACACCCCGGGGTTGGGCACCATTNAACNGGGAAAAACGGGTTGGGNAACGGAAAAACCGGTTNNTCCTANTAGCCTCCCTATATCAATCAGANAAAAACACACCAATACTNTANGCN]




>consensus_3785#0
AGGTTAAACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTG
GTATNCGTACGAAAGCGANGATACTAGTAGCAGCGACACGTGTACCGCCACGAGCACCCG
AAGCCGCTACGAAGTGCGCCACGTGTACTACACGCCGAACGCGCGCACGTACCGACGGGN
AACTACAGCGGCAAACCATATACTGCATACACGTACCGAGANACTTGCTACGAGTGTATG
TGGGAAGGATTTCGGGTACCATTACTATTACAATCGGCACATGCTGACGGTGCACAACAT
TAAGACGAATGCAGCGGGTCAAGATACCCGNANAGTGGGCACNGCTTGGCTAGCAGCACA
AGATATANTACGGCGCAANNTAGCTGCTACCNTACGAGCGAGGATACGTGAAATNGGTGT
TGTAGTAGTNGTAGTTCCGTGTANGTACCCCACATACNNCCAGGGAATATATTNGGCAGG
TAATAATAAGGCCAGNTACCACAGGCTTATANGGTNGTAAACNTNGGACTAGGCCCTNGG
GGCGACCTTAAGNAAGCATAGGACGCGGATTGTGGACACAGCCANGNGGCTTACCTTAGG
TATGATGGGTACACCCCGGGGTTGGGCACCATTNAACNGGGAAAAACGGGTTGGGNAACG
GAAAAACCGGTTNNTCCTANTAGCCTCCCTATATCAATCAGANAAAAACACACCAATACT
NTANGCN

consensusID : consensus_3785#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 721
fasta sequence

                              [GATNGCCGAGCATTCACGCAGCGATATGAAAAGTATACCACCGGTGCAATGGCGAATGTGCGCGAATGTAGCGGAAGGCTCCTCGATACCCGCTACACTTTGCGTCGCTCGCCGGGCTAGATCTCGGCAAGCGGTTAGGCCAGCCGGATATGTACTTCAAAAACCCTTACAACACGGAAAGCGACGAAGATGGATCACCGGAGGCGG-CAACGGGATGCATCTGGCTGCGGCGGCGGCAGCGG-AG-AGAGGCTGCGG-TGGATCCGTCACTGGTGGCGGGGCGGCCCAAAAAACCAAACAACCTCGAAAACGGCAAAGTACCGGCAAGCGCAAGCCAAAGCTTCCGAAGGAGGAGTCACCGGCCGAGCTGGCGCTGCGCAAGTTCCCCTGTCCGGAGTGTCCCCTGTCGTTCAAGACGGGGTACCACCTGAAGCGCCACCATGCGACGATCCATCAGGACCAGCGGTTCCCCTGCACGGTGTGCCACACGTCGTACGGGCGGCGCGAGAAGCTTCGTGCGCACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTTTCGTACGAAAGCGAGGATCTGCTGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTCGAGTGCGCCACGTGTCTCACGCCGAACGCGCGCACGTCCGACGGGAACTACAGCGGCAACCATATCTGCATCACGTACCAGAAC]

[+] EMBL AL931175             [GATNGCCGAGCATTCACGCAGCGATATGAAAAGTATACCACCGGTGCAATGGCGAATGTGCGCGAATGTAGCGGAAGGCTCCTCGATACCCGCTACACTTTGCGTCGCTCGCCGGGCTAGATCTCGGCAAGCGGTTAGGCCAGCCGGATATGTACTTCAAAAACCCTTACAACACGGAAAGCGACGAAGATGGATCACCGGAGGCGG CAACGGGATGCATCTGGCTGCGGCGGCGGCAGCGG AG AGAGGCTGCGG TGGATCCGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM645825             [                                                      ccggccgcCGAATGTAGCGGAAGGCTCCTCGATA CCGCTACACTTTGCGTCGCTCGCCGGGCTAGATCTCGGCAAGCGGTTAGGCC GCCGGATATGTACTTCAAAAACCCTTACAACACGGAAAGCGACGAAGATGGATCACCGGAGGCGGCCAACGGGATGCATCTGGCTGCGGCGGCGGCAGCGGCAGCAGCAGCTGCGGCTGCATCCGTCACTGGTGGCGGGGCGGCCCAAAAAACCAAACAACCTCGAAAACGGCAAAGTACCGGCAAGCGCAAGCCAAAGCTTCCGAAGGAGGAGTCACCGGCCGAGCTGGCGCTGCGCAAGTTCCCCTGTCCGGAGTGTCCCCTGTCGTTCAAGACGGGGTACCACCTGAAGCGCCACCATGCGACGATCCATCAGGACCAGCGGTTCCCCTGCACGGTGTGCCACACGTCGTACGGGCGGCGCGAGAAGCTTCGTGCGCACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTTTCGTACGAAAGCGAGGATCTGCTGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTCGAGTGCGCCACGTGTCTCACGCCGAACGCGCGCACGTCCGACGGGAACTACAGCGGCAACCATATCTGCATCACGTACCAGAAC]




>consensus_3785#1
GATNGCCGAGCATTCACGCAGCGATATGAAAAGTATACCACCGGTGCAATGGCGAATGTG
CGCGAATGTAGCGGAAGGCTCCTCGATACCCGCTACACTTTGCGTCGCTCGCCGGGCTAG
ATCTCGGCAAGCGGTTAGGCCAGCCGGATATGTACTTCAAAAACCCTTACAACACGGAAA
GCGACGAAGATGGATCACCGGAGGCGGCAACGGGATGCATCTGGCTGCGGCGGCGGCAGC
GGAGAGAGGCTGCGGTGGATCCGTCACTGGTGGCGGGGCGGCCCAAAAAACCAAACAACC
TCGAAAACGGCAAAGTACCGGCAAGCGCAAGCCAAAGCTTCCGAAGGAGGAGTCACCGGC
CGAGCTGGCGCTGCGCAAGTTCCCCTGTCCGGAGTGTCCCCTGTCGTTCAAGACGGGGTA
CCACCTGAAGCGCCACCATGCGACGATCCATCAGGACCAGCGGTTCCCCTGCACGGTGTG
CCACACGTCGTACGGGCGGCGCGAGAAGCTTCGTGCGCACATGGAGCTCATACACAAGAT
TCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTTTCGTACGAAAGCGAGGATCTGCTGCA
GCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTCGAGTGCGCCACGTGTCTCACGCC
GAACGCGCGCACGTCCGACGGGAACTACAGCGGCAACCATATCTGCATCACGTACCAGAA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3785#0      AGGTTAAACATGGAGCTCATACACAA-GAT-TCAAAGCTACTTCGTGTGCGAAATCTGTC 58
consensus_3785#1      -----GATNGCCGAGCATTCACGCAGCGATATGAAAAGTATACCACCGGTGCAATGGCGA 55
                            *     ****    ** **  *** * ***  **   *    * * ***     

consensus_3785#0      TGGTATNCGTACGAAAGCGANGATACT--AGTAGCAGCGACACGT-GTACCGCCACGAGC 115
consensus_3785#1      ATGTGCGCGAATGTAGCGGAAGGCTCCTCGATACCCGCTACACTTTGCGTCGCTCGCCGG 115
                        **   ** * * *   ** *   *     ** * ** **** * *   ***     * 

consensus_3785#0      ACCCGAAGCCGCTACGAAGT-GCGCCACGTGTAC-TACACGCCGAACGCGCGCACGTACC 173
consensus_3785#1      GCTAGATCTCGGCAAGCGGTTAGGCCAGCCGGATATGTACTTCAAAAACCCTTACAACAC 175
                       *  **   **  * *  **   ****   * *  *  **  * **  * *  **    *

consensus_3785#0      GACGGGNAACTACAGCGGCAAACCATATACTGCATACACGTACCGAGANACTTGCTACGA 233
consensus_3785#1      GGAAAGCGACGAAGATGGATCACCGGAGGCGGCAACGGGATGC--ATCTGGCTGCGGCGG 233
                      *    *  ** *    **   ***  *  * ***      * *  *      ***  ** 

consensus_3785#0      GTGTATGTGGGAAGGATTTCGGGTACCATTACTATTACAATCGGCACATGCTGACGGTGC 293
consensus_3785#1      CGGCA-GCGGAGAGAGGCTGCGGTGGATCCGTCACTGGTGGCGGGGCGGCCCAAAAAACC 292
                        * * * **  **    *  ***         * *     ***  *   *  *     *

consensus_3785#0      ACAACATTAAGACGAATGCAGCGGGTCAAGATACCCGNANAGTGGGCACNGCTTGGCTAG 353
consensus_3785#1      AAACAACCTCGAAAACGGCAAAGTACCGGCAAGCGCAAGCCAAAGCTTCCGAAGGAGGAG 352
                      * *  *    **  *  ***  *   *   *  * *        *   * *   *   **

consensus_3785#0      -CAGCACAAGATATANTACGGCGCAANNTAGCTGCTACCNTACGAGCGAGGATACGTGAA 412
consensus_3785#1      TCACCGGCCGAGCTGGCGCTGCGCAAGTTCCCCTGTCCGGAGTGTCCCCTGTCGTTCAAG 412
                       ** *    **  *    * ******  *  *   * *     *  *   *       * 

consensus_3785#0      ATNGGTGTTGTAGTAGTNGTAGTTCCGTGTANGTACCCCACAT-ACNNCCAGGGAATATA 471
consensus_3785#1      ACGGG-GTACCACCTGAAGCGCCACCATGCGACGATCCATCAGGACCAGCGGTTCCCCTG 471
                      *  ** **   *   *  *     ** **     * **  **  **   * *      * 

consensus_3785#0      TTNGGCAGGTAATA----ATAAGGCCAGNTACCACAGGCTTATANGGTNGTAAACNTNGG 527
consensus_3785#1      CACGGTGTGCCACACGTCGTACGGGCGGCGCGAGAAGCTTCGTGCGCACATGGAGCTCAT 531
                         **   *  * *     ** ** * *       **  *  *  *    *  *  *   

consensus_3785#0      ACTAGGCCCTNGGGGCGACCTTAAGNAAGCATAGGACGCGGATTGTGGACACAGCCANGN 587
consensus_3785#1      ACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTTTC---GTACGAAAGCGA 588
                      **       *    ** ** *   *   * *        ** **      **      * 

consensus_3785#0      GGCTTACCTTAGGTATGATGGGTAC-ACCCCGGG-GTTGGGCACCATTNAACNGGGAAAA 645
consensus_3785#1      GGATCTGCTGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTCGAGTGCGCCA- 647
                      ** *   **   *    * * ****  ** ** *     *   **  *  *  * *  * 

consensus_3785#0      ACGGGTTGGGNAACGGAAAAACCGGTTNNTCCTANTAGCCTCCCTATATCAATCAGANA- 704
consensus_3785#1      -CGTGTCTCACGCCG--AACGCGCGCACGTCCGACGGGAACTACAGCGGCAACCATATCT 704
                       ** **       **  **  *  *    *** *   *     *     *** ** *   

consensus_3785#0      --AAAACACACCAATACTNTANGCN 727
consensus_3785#1      GCATCACGTACCAGAAC-------- 721
                        *  **  ****  **