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Anopheles gambiae
cluster # 3788 cluster # 3788       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3788#0 length = 983 sequences # 1  
consensus_3788#1 length = 731 sequences # 2  

consensusID : consensus_3788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 983
fasta sequence
                              [CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATANCGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTAACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTCCGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNAATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTANTATNGTAGCTAATAGACACTACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGTACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAGAAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGTCACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGCGTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAGTATGGAGAACGGGAACNATCAAGACTACTGGCGAACANCCAGCTTGGATTTGTCANCGGCCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNATAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCACCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAANNTGGCGTGTGTNGATTAAGTGTGC]

[+] EMBL AL693967             [CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATANCGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTAACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTCCGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNAATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTANTATNGTAGCTAATAGACACTACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGTACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAGAAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGTCACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGCGTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAGTATGGAGAACGGGAACNATCAAGACTACTGGCGAACANCCAGCTTGGATTTGTCANCGGCCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNATAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCACCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAANNTGGCGTGTGTNGATTAAGTGTGC]


>consensus_3788#0 CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGC GTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTG AACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAN CGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTA ACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTC CGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNA ATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTAN TATNGTAGCTAATAGACACTACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGTA CTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAGA AAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGTC ACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGCG TCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAGT ATGGAGAACGGGAACNATCAAGACTACTGGCGAACANCCAGCTTGGATTTGTCANCGGCC ACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNATA GGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCACC TTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAANN TGGCGTGTGTNGATTAAGTGTGC



consensusID : consensus_3788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 731
fasta sequence
                              [CGACATAACCCATAACGTTAAAGCAAATCCCTTTCGGGGATGAAAAACAAACATAAAACACAAAAGCAGGATAAAGTAGCTGAAAACAAAACTTGTATCCTTTTTTGGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAAAAAAAAAAAAGAACATAAATCAATCCCGCAATAAGATGTAGTGTAGAGGATGAAGACACGAAATCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTA-ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGCGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGG-CTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTGTCTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT]

[+] EMBL BX622462             [CGACATAACCCATAACGTTAAAGCAAATCCCTTTCGGGGATGAAAAACAAACATAAAACACAAAAGCAGGATAAAGTAGCTGAAAACAAAACTTGTATCCTTTTTTGGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAAAAAAAAAAAAGAACATAAATCAATCCCGCAATAAGATGTAGTGTAGAGGATGAAGACACGAAATCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTA ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGCGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGG CTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTGTCTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT]
[+] EMBL BX622881             [                                                                                                                                                                                                               TCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACANTGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTAGACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGNGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGGTCTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACNTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACNACGACATAACGACAGGC                                                                               ]


>consensus_3788#1 CGACATAACCCATAACGTTAAAGCAAATCCCTTTCGGGGATGAAAAACAAACATAAAACA CAAAAGCAGGATAAAGTAGCTGAAAACAAAACTTGTATCCTTTTTTGGTAAAAAAGAGAG AAAAATTGTGAAACTTAGAAGCAAAAAAAAAAAAGAACATAAATCAATCCCGCAATAAGA TGTAGTGTAGAGGATGAAGACACGAAATCGTATCGAACTGTGCTATTGGACACGGACCTG CTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTAA CACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGCGCATCCCACAGCGAGTCG CGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGGCTCACGATATACTTTACTCGGTT CCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGC CAAAAGCACACGTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATC CCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCG AAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAACGACAGGCCACAAGTT TCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTGTCTACTGTTGTGTGCAACCTGTT AGAAGTTTAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3788#0      CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGC 60
consensus_3788#1      ------------------------------------------------------------
                                                                                  

consensus_3788#0      GTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTG 120
consensus_3788#1      ------------------------------------------------------------
                                                                                  

consensus_3788#0      AACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAN 180
consensus_3788#1      ----------------------------------------------------CGACATAA 8
                                                                          ******* 

consensus_3788#0      CGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTA 240
consensus_3788#1      C------CCATA---ACGTTAAAGCAAATCCCTTTCG----GGGATGAAAAACAAACATA 55
                      *      *** *   *  * * **  *   **    *     *  * *  * * *   **

consensus_3788#0      ACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTC 300
consensus_3788#1      AAACACA-----AAAGCAGGATAAAGTAGCTGAAAA----CAAAACTTGTATCCTTTTTT 106
                      *            ****  * ** ** ** * *  *      * *   *  *    *** 

consensus_3788#0      CGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNA 360
consensus_3788#1      GGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAA-----AAAAAAAAAAGAACATA 161
                       ** * **    *      ****   * **  *  *        * * *  ** *    *

consensus_3788#0      ATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTAN 420
consensus_3788#1      AATCAATCCCGCAATAA--GATGTAGTGTAGAGGATGAAG-ACACGAAATCGTATCGAAC 218
                      * * **       ****  * * ** *   *   ***    *   *   *   ** * * 

consensus_3788#0      TATNGTAGCTAATAGACAC-TACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGT 479
consensus_3788#1      TGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAAT 278
                      * *  **    * *   ** * *    **  * *       * * *   *         *

consensus_3788#0      ACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAG 539
consensus_3788#1      TCAACGTGTAACGTTAACGTA-ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACG 337
                       *  *  ****   **    * * *  *  *          **     * *     ** *

consensus_3788#0      AAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGT 599
consensus_3788#1      AAAGCGCATCCCACA-GCGAGTCGCGGATGTTTTACCGTTCAGA-GGGAGAGAAATACAC 395
                      *** *  *    ***   **  *  *****    *       ** *  * **    *   

consensus_3788#0      CACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGC 659
consensus_3788#1      GGCTCACGATATACTTTA-CTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACG 454
                        *    **  **** *  ****  **     *     *  * * **    * *      

consensus_3788#0      GTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAG 719
consensus_3788#1      ATCGAGGA----TGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTG 510
                       ***        **  *** ** ***  *  * ***   **    *   * *   *   *

consensus_3788#0      TATGGAGAACGGGAACNATCAAGACTAC-TGGCGAACANCCAGCTTGGATTTGTCANCGG 778
consensus_3788#1      TGTTTATG-CAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGG 569
                      * *  *   *   * *   *   *  ** *  ***      **  **  * ***    **

consensus_3788#0      CCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNA 838
consensus_3788#1      GCGCAC-GACAGTGTGAACAACAA-AATTTGCGAAAAGACACTACCGAAACGACATGAGA 627
                       * *** ** ***   **   ***  * ***  *        *    *** ** *    *

consensus_3788#0      TAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCA 898
consensus_3788#1      TAC-TGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTT--CA 684
                      **  *    ** *  *** *              *          * **  *  **  **

consensus_3788#0      CCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAA 958
consensus_3788#1      GCCT-AAGCAGCTGT--CTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT---------- 731
                       * *    **  * *  * *      ***   ** *       *    **          

consensus_3788#0      NNTGGCGTGTGTNGATTAAGTGTGC 983
consensus_3788#1      -------------------------
                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)