These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence [CAAGAATCCCCCGAGGTTTGCACGCAGAATAGCACACATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGAACACACTTCCCGATCGAAGACACTGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCGTATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGGAGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTACGTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTCCTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTGAACGTANAC] [+] EMBL AL694017 [CAAGAATCCCCCGAGGTTTGCACGCAGAATAGCACACATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGAACACACTTCCCGATCGAAGACACTGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCGTATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGGAGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTACGTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTCCTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTGAACGTANAC] consensusID : consensus_3791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCCGCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTGCACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATCTGCTCCCTTGTCGTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGGTGCAGACTGTTTTGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTGTTCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGTGATTCTACACATTCGCTTCTCTCCTTACCGTCGATGCCTCTCTATCCAACC] [+] EMBL BX612810 [GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCCGCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTGCACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATCTGCTCCCTTGTCGTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGGTGCAGACTGTTTTGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTGTTCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGTGATTCTACACATTCGCTTCTCTCCTTACCGTCGATGCCTCTCTATCCAACC] [+] EMBL BX614517 [ TAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3791#0 ------------------------------------------------------------ consensus_3791#1 GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCC 60 consensus_3791#0 ---------------------------------------CAAGAATCCCCCGAGGTT-TG 20 consensus_3791#1 GCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTG 120 * * * * * ** ** consensus_3791#0 CACGCAGAATAGCACAC-ATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAAT 79 consensus_3791#1 CACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAAT 180 ***************** ****************************************** consensus_3791#0 TAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGG 139 consensus_3791#1 TAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGG 240 ************************************************************ consensus_3791#0 CTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGA 199 consensus_3791#1 CTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGA-GATGAGATGTGA 299 ********** ************************************ ************ consensus_3791#0 ACACACTTCCCGATCGAAGACAC-----TGCACATGAATGCACAAAATACGCTCAATTCA 254 consensus_3791#1 ACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCA 359 *********************** ******************************** consensus_3791#0 ACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATAC 314 consensus_3791#1 ACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATAC 419 ******* * ************************************************** consensus_3791#0 TGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCG 374 consensus_3791#1 TGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGG----------------------- 456 ************************************* consensus_3791#0 TATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGG 434 consensus_3791#1 ---------------------------------------CTCAAACATGGACCCGTTGGG 477 ********************* consensus_3791#0 AGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTAC 494 consensus_3791#1 AGGCTGTCGAAATTATCAATTGCTATCCG-TGCTGGCTCAGCGCATCTGCTCCCTTGT-C 535 ******** *************** **** **************************** * consensus_3791#0 GTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCG 554 consensus_3791#1 GTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGG--TGCAG-ACTGT-TTTGCG 591 ****** ****************************** * ***** ***** * *** consensus_3791#0 CCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCA 614 consensus_3791#1 CCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTG---TTCGGCCAGGCGCA 648 ***************************** ******* ** ************ consensus_3791#0 TTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTC 674 consensus_3791#1 TTCGTCCCAGCACTTCAGTCCACTTCAGCTGCG-TGA-TTCTACACATT-CGCTTCTCTC 705 ********************************* *** *********** ********** consensus_3791#0 CTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTG 734 consensus_3791#1 CTTACCGTCGA--TGCCTCTCTATCC-AACC----------------------------- 733 ********** ************* **** consensus_3791#0 AACGTANAC 743 consensus_3791#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||