These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1083 fasta sequence [NGGTTTATGATGTGCTGATCGGTCTGCGTACGATCTGACGCATCACACGAACGCGACGGGAGTGAAGCTGGTGTGCTGGAGAAAAAGCTACCCGCACCGAAAACGATCGAAGTGACGGAAGTTGTACCTGAACAAGGCCGCCATCGGGAAGTGCGTTCAAGAAGGAAGCGAAGTGCCATTACGGAGTGCGCTGGACAAAGCTTGAGACCTGGTGTGAGTGTAGAGACCATATTGGGCAAGAAGTCTACGGGTGACAGCTTGGGTGAGCACTTTGCTTGGAGCGGTCAAATGGCACCCGATNGTAGAAGGTAAACGAAACGATCTTGATATTGCGNGGTTGGAAACAACTAAATACTTCCCAAAGACCGGTGCACCGGTAATTGAACAGAAGGATTTAACCCCCGGAAGACCGTCATTNGNATGGGCCCTTTCCGTATACCGGGACATTATTGGGCCCTGNCATTNATGTTACTACCACTTGGCTTNGGAAGAGCCATTAGGCCTTCCCGGGGATGCCGCCGACAGAGCCGAACGAGAACTAGATGACCAAGGCTTAACTATANTTACAGACTTGGGCCCNAAACCGGGTNTTAGTNGGAGCATACCCCGGTATGAAAAAGTTGGCGTCACCCGGNTGGCTATAACNACGGATAGGAAAGTTAAAACAACATNTGGCCCCNGGAGNTANATAGGGAACACCGGGATTTGNTNNGAAAGGAAAAGAATATTACCTTTACACAGGGGAACCCTTCCCACCAATACCCGNAACGCAACNGTNAGTACGCCACAAAGGGGACTNTTGAACTTGAACNATACCCCGAAGCCGNGGGTACACCGACAACCGCGTAACCNGCCTCCAGCTANNNTTTACAACACGGGCNACCGGGGANCCGCACGAAACTTATGGGNCCAACTTTCCCCAGTGGAACCGGTNGAACAACTATAACAGCANCGTCAGCAGAATCATCACAACAGCACAGGCCTATGAAAACGGTGNAACCCNGCACANACCGGTGATNAACACGCTCATGCCGAAAAACACGGGTGAACACATCCGAAAAAAAGCACAGCACGTCNACAACA] [+] EMBL AL695238 [NGGTTTATGATGTGCTGATCGGTCTGCGTACGATCTGACGCATCACACGAACGCGACGGGAGTGAAGCTGGTGTGCTGGAGAAAAAGCTACCCGCACCGAAAACGATCGAAGTGACGGAAGTTGTACCTGAACAAGGCCGCCATCGGGAAGTGCGTTCAAGAAGGAAGCGAAGTGCCATTACGGAGTGCGCTGGACAAAGCTTGAGACCTGGTGTGAGTGTAGAGACCATATTGGGCAAGAAGTCTACGGGTGACAGCTTGGGTGAGCACTTTGCTTGGAGCGGTCAAATGGCACCCGATNGTAGAAGGTAAACGAAACGATCTTGATATTGCGNGGTTGGAAACAACTAAATACTTCCCAAAGACCGGTGCACCGGTAATTGAACAGAAGGATTTAACCCCCGGAAGACCGTCATTNGNATGGGCCCTTTCCGTATACCGGGACATTATTGGGCCCTGNCATTNATGTTACTACCACTTGGCTTNGGAAGAGCCATTAGGCCTTCCCGGGGATGCCGCCGACAGAGCCGAACGAGAACTAGATGACCAAGGCTTAACTATANTTACAGACTTGGGCCCNAAACCGGGTNTTAGTNGGAGCATACCCCGGTATGAAAAAGTTGGCGTCACCCGGNTGGCTATAACNACGGATAGGAAAGTTAAAACAACATNTGGCCCCNGGAGNTANATAGGGAACACCGGGATTTGNTNNGAAAGGAAAAGAATATTACCTTTACACAGGGGAACCCTTCCCACCAATACCCGNAACGCAACNGTNAGTACGCCACAAAGGGGACTNTTGAACTTGAACNATACCCCGAAGCCGNGGGTACACCGACAACCGCGTAACCNGCCTCCAGCTANNNTTTACAACACGGGCNACCGGGGANCCGCACGAAACTTATGGGNCCAACTTTCCCCAGTGGAACCGGTNGAACAACTATAACAGCANCGTCAGCAGAATCATCACAACAGCACAGGCCTATGAAAACGGTGNAACCCNGCACANACCGGTGATNAACACGCTCATGCCGAAAAACACGGGTGAACACATCCGAAAAAAAGCACAGCACGTCNACAACA] consensusID : consensus_3794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [AGAATCCCCCGAGGTTATGACAGTGGGGAGCATTTGCTGGCGGTCATGGCACGATGTGAAGCTAACGAACGATCTGATTGCGGTGAAAACTACCTCCAAGACGGTGCACGTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGGCATTGGCCGCATTATGTACTCACTGCTGGAGCATAGCTTCCGGATGCGCGAAGGCGACGAACAGCGCAGCTACTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCTCCGTGCTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCGGCCTCACATCCGTCGACGTGTCGCACAAGGTGGATGATTCGAGCGGTTCGATCGGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTACGGAATTACGATCGATTTCGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAAGTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAACAGGACGCACAAGCTGGGCCGAGGTGGANACAAAAGTATCCACGATTTGAGCAGCAAGAAGCGAGCGCGAAGTAAATCAGAAACAAATCGAATTTACTAGGCGTGGAAGAATAATATGCATTTGGAAATTTAAATGACACTAAACGCTTTATACGATAGCGATCGCCTTTCTATCCCTTTCCCCCAGTGTTNTGTTTACTTAATGTTTAATTTAAAGCATAATTTTACATATAA] [+] EMBL AL694106 [AGAATCCCCCGAGGTTATGACAGTGGGGAGCATTTGCTGGCGGTCATGGCACGATGTGAAGCTAACGAACGATCTGATTGCGGTGAAAACTACCTCCAAGACGGTGCACGTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGGCATTGGCCGCATTATGTACTCACTGCTGGAGCATAGCTTCCGGATGCGCGAAGGCGACGAACAGCGCAGCTACTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCTCCGTGCTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCGGCCTCACATCCGTCGACGTGTCGCACAAGGTGGATGATTCGAGCGGTTCGATCGGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTACGGAATTACGATCGATTTCGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAAGTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAACAGGACGCACAAGCTGGGCCGAGGTGGANACAAAAGTATCCACGATTTGAGCAGCAAGAAGCGAGCGCGAAGTAAATCAGAAACAAATCGAATTTACTAGGCGTGGAAGAATAATATGCATTTGGAAATTTAAATGACACTAAACGCTTTATACGATAGCGATCGCCTTTCTATCCCTTTCCCCCAGTGTTNTGTTTACTTAATGTTTAATTTAAAGCATAATTTTACATATAA] consensusID : consensus_3794#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [GCCGCCATCGGGAAGGCGTTCAAGAAGGAAGCGAAGGCCATTACGGAGGCGCTGGCAAAGCTGAGCCTGGGTGAGGTAGAGACCATTGGCAAGAGTCTCGGTGACAGTGGGGAGCATTTGCTGGCGGTCAATGGCACCGATGTGAAGCTAACGAACGATCTGATTGCGGTGAAAACTACCTCCAAGACGGTGCACGTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGGCATTGGCCGCATTATGTACTCACTGCTGGAGCATAGCTTCCGGATGCGCGAAGGCGACGAACAGCGCAGCTACTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCTCCGTGCTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCGGCCCTCACATCCGTCGACGTGTCGCACAAGGTGGATGATTCGAGCGGTTCGATCGGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTACGGAATTACGATCGATTTCGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAAGTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAACAGGACGC] [+] EMBL BX627936 [GCCGCCATCGGGAAGGCGTTCAAGAAGGAAGCGAAGGCCATTACGGAGGCGCTGGCAAAGCTGAGCCTGGGTGAGGTAGAGACCATTGGCAAGAGTCTCGGTGACAGTGGGGAGCATTTGCTGGCGGTCAATGGCACCGATGTGAAGCTAACGAACGATCTGATTGCGGTGAAAACTACCTCCAAGACGGTGCACGTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGGCATTGGCCGCATTATGTACTCACTGCTGGAGCATAGCTTCCGGATGCGCGAAGGCGACGAACAGCGCAGCTACTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCTCCGTGCTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCGGCCCTCACATCCGTCGACGTGTCGCACAAGGTGGATGATTCGAGCGGTTCGATCGGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTACGGAATTACGATCGATTTCGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAAGTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAACAGGACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3794#1 ------------------------------------------------------------ consensus_3794#2 ------------------------------------------------------------ consensus_3794#0 NGGTTTATGATGTGCTGATCGGTCTGCGTACGATCTGACGCATCACACGAACGCGACGGG 60 consensus_3794#1 ------------------------------------------------------------ consensus_3794#2 ------------------------------------------------------------ consensus_3794#0 AGTGAAGCTGGTGTGCTGGAGAAAAAGCTACCCGCACCGAAAACGATCGAAGTGACGGAA 120 consensus_3794#1 ------------------------------------------------------------ consensus_3794#2 ----------------GCCGCCATCGGGAAG-GCGTTCAAGAAGGAAGCGAAG-GCCATT 42 consensus_3794#0 GTTGTACCTGAACAAGGCCGCCATCGGGAAGTGCGTTCAAGAAGGAAGCGAAGTGCCATT 180 consensus_3794#1 ------------------------------------------AGAATC-------CCCCG 11 consensus_3794#2 ACGGAG---GCGCTGGCAAAGCTGAGCCTGGGTGAGGTAGAGACCATT-------GGCAA 92 consensus_3794#0 ACGGAGTGCGCTGGACAAAGCTTGAGACCTGGTGTGAGTGTAGAGACCATATTGGGCAAG 240 * consensus_3794#1 AGGTT-----ATGACAGT---GGGGAGCA-TTTGCT---GGCGGTCA--TGGCAC----- 52 consensus_3794#2 GAGTCTC--GGTGACAGT---GGGGAGCA-TTTGCT---GGCGGTCAA-TGGCACC---- 138 consensus_3794#0 AAGTCTACGGGTGACAGCTTGGGTGAGCACTTTGCTTGGAGCGGTCAAATGGCACCCGAT 300 ** ****** ** ***** ****** ******* ****** consensus_3794#1 GATGTGAAGCTAACGAA-CGATCTG---ATTGCGG---TGAAAAC-------TACCTCCA 98 consensus_3794#2 GATGTGAAGCTAACGAA-CGATCTG---ATTGCGG---TGAAAAC-------TACCTCCA 184 consensus_3794#0 NGTAGAAGGTAAACGAAACGATCTTGATATTGCGNGGTTGGAAACAACTAAATACTTCCC 360 * * * ****** ****** ****** ** **** *** *** consensus_3794#1 AGA---CGGTGCAC-----GTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGG 150 consensus_3794#2 AGA---CGGTGCAC-----GTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGG 236 consensus_3794#0 AAAGACCGGTGCACCGGTAATTGAACAGAAGGATTTAACCCCCGGAAGACCGTCATTNGN 420 * * ******** ***** *** * * * ** ** ** * consensus_3794#1 CATTGGCCGCATTATGTACT----CACTGCTGGAGCATAGCTTCCG-GATGCGCGAAGGC 205 consensus_3794#2 CATTGGCCGCATTATGTACT----CACTGCTGGAGCATAGCTTCCG-GATGCGCGAAGGC 291 consensus_3794#0 ATGGGCCCTTTCCGTATACCGGGACATTATTGGGCCCTGNCATTNATGTTACTACCACTT 480 * ** * *** ** * *** * * * * * * * * consensus_3794#1 GAC--GAACAGCGCAGCTA---CTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCT 260 consensus_3794#2 GAC--GAACAGCGCAGCTA---CTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCT 346 consensus_3794#0 GGCTTNGGAAGAGCCATTAGGCCTTCCCGGGGATGCCGCCGACAGAGCCGAACGAGAACT 540 * * ** ** ** **** ** * *** * *** ** ** consensus_3794#1 CCGTG-CTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCG 319 consensus_3794#2 CCGTG-CTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCG 405 consensus_3794#0 AGATGACCAAGGCTTAACTATANTTACAGACTTGGGCC---CNAAACCGGGTNTTAGTNG 597 ** * *** * * * * * *** ** * * ** * * consensus_3794#1 GCC-TCACATCCGTC--GACGTGTCG----CACAAGGTGGATGATTCGAGCGGTTCGATC 372 consensus_3794#2 GCCCTCACATCCGTC--GACGTGTCG----CACAAGGTGGATGATTCGAGCGGTTCGATC 459 consensus_3794#0 GAGCATACCCCGGTATGAAAAAGTTGGCGTCACCCGGNTGGCTATAACNACGGATAGGAA 657 * ** * ** * ** * *** ** * ** *** * * consensus_3794#1 GGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTAC-GGAATTACGATCGATTT 431 consensus_3794#2 GGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTAC-GGAATTACGATCGATTT 518 consensus_3794#0 AGTTAAAACAACATNTGGCCCCNGGAGNTANATAGGGAACACCGGGATTTGNTNNGAAAG 717 ** * * * *** * * ** ** *** ** consensus_3794#1 CGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAA-- 489 consensus_3794#2 CGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAA-- 576 consensus_3794#0 GAAAAGAATATTACCTTTACACAGGGGAACCCTTC-CCACCAATACCCGN-AACGCAACN 775 * * * ** * ** ** ** * * * * ** ** * **** consensus_3794#1 GTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAAC-AGGACGCAC 548 consensus_3794#2 GTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAAC-AGGACGC-- 633 consensus_3794#0 GTNAGTACGCCACAAAGGGGACTNTTGAACTTGAACNATACCCCGAAGCCGNGGGTACAC 835 ** * * * * * * *** * * * * ** * consensus_3794#1 AAGCTGGGCCGAGGTGGANACAAA---AGTATCCACGATTTGAGCAGCAAGAAGCGAGCG 605 consensus_3794#2 ------------------------------------------------------------ consensus_3794#0 CGACAACCGCGTAACCNGCCTCCAGCTANNNTTTACAACACGGGCNACCGGGGANCCGCA 895 consensus_3794#1 CGAAGTAAATCAGAAACAAATCGAATTTACTAGGCGTGGAAGAATAATATGCATTTGGAA 665 consensus_3794#2 ------------------------------------------------------------ consensus_3794#0 CGAAACTTAT--GGGNCCAACTTTCCCCAGTGGAACCGGTNGAACAACTATAACAGCANC 953 consensus_3794#1 ATTTAAATGACACTAAACGCTTTATACGATAGCGATCGCCTTTCTATCCCTTTCCC-CCA 724 consensus_3794#2 ------------------------------------------------------------ consensus_3794#0 GTCAGCAGAATCATCACAACAGCACAGGCCTATGAAAACGGTGNAACCCNGCACANACCG 1013 consensus_3794#1 GTGTTNTGTTTACTTAATGTTTAATTTAAAGCATAATTTTACATATAA------------ 772 consensus_3794#2 ------------------------------------------------------------ consensus_3794#0 GTGATNAACACGCTCA-TGCCGAAAAACACGGGTGAACACATCCGAAAAAAAGCACAGCA 1072 consensus_3794#1 ----------- consensus_3794#2 ----------- consensus_3794#0 CGTCNACAACA 1083 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||