These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 735 fasta sequence [AGGCAAGAACNCCGGCACGTAGNGATTTCTTCCAGTTTTCAACTCATAAGCATCCGGCTCTATCTGGCGTATTTGAACACGGAGTTTTTAACTCCCCTTCACCCACCGTCCTCCTCCAAAGTGCACCAACGATGGATGCGTCAACCATGCTGGAGCGTGCGACGGAACTGATCCGCTGCTGCAAGGTACCACGGCTGATGACCAGCATCGAGGAGGGTCCCCTAGACCGGAGCACCTTTGTACAGTTTCTGCACGTGCTGGAAGCGACGCTACCGGCGGTGTTTGATCTACTGGCCGAGCACGGCACCCTACTGACCGGGTACGACGAGTACAACGAGGATGATAACGTGCCGTTCAAGGCAGGGCTGGTGCTTGTGATAGCTGAACAGTACAGCGAAGCAGGCGACGCTAGGGCGTCCGGTGAGGATGCATCCCACGGCGAGGAGTATCGCACCGGCACGCCAGCGCTGCGGAACCGTTATCGCACAGTTCTGCCAGGGCCACGAACTGGAGCATCTGCTGACTGACAGGGGCAGGTGATCGGGTAATGGCGTCACTTGCACGAGCACTATCGGCGGGGTGCTGTCGGCGAAGCGGAGTTGGAAAGCATTCATTCCCGGGCCGACGTGGGCAACGGGTTCGTGCGGCTTGGTGGAGCTGCTGGTACCGGCCCCTAATCCCGGTAGAGTTGGCGCCCCNGCNGCGCAAGTGGAACGATTAACCGGGCGGCATATA] [+] EMBL BX467539 [AGGCAAGAACNCCGGCACGTAGNGATTTCTTCCAGTTTTCAACTCATAAGCATCCGGCTCTATCTGGCGTATTTGAACACGGAGTTTTTAACTCCCCTTCACCCACCGTCCTCCTCCAAAGTGCACCAACGATGGATGCGTCAACCATGCTGGAGCGTGCGACGGAACTGATCCGCTGCTGCAAGGTACCACGGCTGATGACCAGCATCGAGGAGGGTCCCCTAGACCGGAGCACCTTTGTACAGTTTCTGCACGTGCTGGAAGCGACGCTACCGGCGGTGTTTGATCTACTGGCCGAGCACGGCACCCTACTGACCGGGTACGACGAGTACAACGAGGATGATAACGTGCCGTTCAAGGCAGGGCTGGTGCTTGTGATAGCTGAACAGTACAGCGAAGCAGGCGACGCTAGGGCGTCCGGTGAGGATGCATCCCACGGCGAGGAGTATCGCACCGGCACGCCAGCGCTGCGGAACCGTTATCGCACAGTTCTGCCAGGGCCACGAACTGGAGCATCTGCTGACTGACAGGGGCAGGTGATCGGGTAATGGCGTCACTTGCACGAGCACTATCGGCGGGGTGCTGTCGGCGAAGCGGAGTTGGAAAGCATTCATTCCCGGGCCGACGTGGGCAACGGGTTCGTGCGGCTTGGTGGAGCTGCTGGTACCGGCCCCTAATCCCGGTAGAGTTGGCGCCCCNGCNGCGCAAGTGGAACGATTAACCGGGCGGCATATA] [+] EMBL BM606516 [ TTTCTTCCAGTTTTCAACTCATAAGCATCCGGCTCTATCTGGCGTATTTGAACACGGAGTTTTTAACTCCCCTTCACCCACCGTCCTCCTCCAAAGTGCACCAACGATGGATGCGTCAACCATGCTGGAGCGTGCGACGGAACTGATCCGCTGCTGCAAGGTACCACGGCTGATGACCAGCATCGAGGAGGGTCCCCTAGACCGGAGCACCTTTGTACAGTTTCTGCACGTGCTGGAAGCGACGCTACCGGCGGTGTTTGATCTACTGGCCGAGCACGGCACCCTACTGACCGGGTACGACGAGTACAACGAGGATGATAACGTGCCGTTCAAGGCAGGGCTGGTGCTTGTGATAGCTGAACAGTACAGCGAAGCAGTGGACGCTAGGGCGTCCGGTGAGGATGCATCCCACGGCGAGGAGTATCGCACCGGCACGCCAGCGCTGCGGAACCG TATCGCACAGTTCTGCCAGGGCCACGAACTGGAGCATCTGCTGACTGACAGGGGCA GTGATCGGGT ATGGCGTCACTTGCACGACCACTATCGGC GGGTGCT ] consensusID : consensus_3795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCCGAGGTTAAATAAAAAGTTTCATTCCTGTAATTTCTTCAGTTTTCAACTCATAAGCATCCGGCTCTATCTGGCGTATTTGAACACGGAGTTTTTAACTCCCCTTCACCCACCGTCCTCCTCCAAAGTGCACCAACGATGGATGCGTCAACCATGCTGGAGCGTGCGACGGAACTGATCCGCTGCTGCAAGGTACCACGGCTGATGACCAGCATCGAGGAGGGTCCCCTAGACCGGAGCACCTTTGTACAGTTTCTGCACGTGCTGGAAGCGACGCTACCGGCGGTGTTTGATCTACTGGCCGAGCACGGCACCCTACTGACCGGGTACGACGAGTACAACGAGGATGATAACGTGCCGTTCAAGGCAGGGGCTGGTGCTTGTGATAGCTGAACAGTACAGCGAAGCAGGCGACGCTAGGGCGTCCGGTGAGGATGCATCCCACGGCGAGGAGTATCGCACCGGCACGCCAGCGCTGCCGGAACCGTATCGCACAGTTCTGCCAGGGCCACGAACTGGAGCATCTGCTGACTGACAGCGGCAGTGATCGCGGTATGGCCGTCACTTGCCCGACC] [+] EMBL AL694108 [CCCGAGGTTAAATAAAAAGTTTCATTCCTGTAATTTCTTCAGTTTTCAACTCATAAGCATCCGGCTCTATCTGGCGTATTTGAACACGGAGTTTTTAACTCCCCTTCACCCACCGTCCTCCTCCAAAGTGCACCAACGATGGATGCGTCAACCATGCTGGAGCGTGCGACGGAACTGATCCGCTGCTGCAAGGTACCACGGCTGATGACCAGCATCGAGGAGGGTCCCCTAGACCGGAGCACCTTTGTACAGTTTCTGCACGTGCTGGAAGCGACGCTACCGGCGGTGTTTGATCTACTGGCCGAGCACGGCACCCTACTGACCGGGTACGACGAGTACAACGAGGATGATAACGTGCCGTTCAAGGCAGGGGCTGGTGCTTGTGATAGCTGAACAGTACAGCGAAGCAGGCGACGCTAGGGCGTCCGGTGAGGATGCATCCCACGGCGAGGAGTATCGCACCGGCACGCCAGCGCTGCCGGAACCGTATCGCACAGTTCTGCCAGGGCCACGAACTGGAGCATCTGCTGACTGACAGCGGCAGTGATCGCGGTATGGCCGTCACTTGCCCGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3795#0 ---------AGGCAAGAACNCCGGCACGTAGNGATTTCTTCCAGTTTTCAACTCATAAGC 51 consensus_3795#1 CCCGAGGTTAAATAAAAAGTTTCATTCCT-GTAATTTCTTC-AGTTTTCAACTCATAAGC 58 * ** ** * * * ******** ****************** consensus_3795#0 ATCCGGCTCTATCTGGCGTATTTGAACACGGAGTTTTTAACTCCCCTTCACCCACCGTCC 111 consensus_3795#1 ATCCGGCTCTATCTGGCGTATTTGAACACGGAGTTTTTAACTCCCCTTCACCCACCGTCC 118 ************************************************************ consensus_3795#0 TCCTCCAAAGTGCACCAACGATGGATGCGTCAACCATGCTGGAGCGTGCGACGGAACTGA 171 consensus_3795#1 TCCTCCAAAGTGCACCAACGATGGATGCGTCAACCATGCTGGAGCGTGCGACGGAACTGA 178 ************************************************************ consensus_3795#0 TCCGCTGCTGCAAGGTACCACGGCTGATGACCAGCATCGAGGAGGGTCCCCTAGACCGGA 231 consensus_3795#1 TCCGCTGCTGCAAGGTACCACGGCTGATGACCAGCATCGAGGAGGGTCCCCTAGACCGGA 238 ************************************************************ consensus_3795#0 GCACCTTTGTACAGTTTCTGCACGTGCTGGAAGCGACGCTACCGGCGGTGTTTGATCTAC 291 consensus_3795#1 GCACCTTTGTACAGTTTCTGCACGTGCTGGAAGCGACGCTACCGGCGGTGTTTGATCTAC 298 ************************************************************ consensus_3795#0 TGGCCGAGCACGGCACCCTACTGACCGGGTACGACGAGTACAACGAGGATGATAACGTGC 351 consensus_3795#1 TGGCCGAGCACGGCACCCTACTGACCGGGTACGACGAGTACAACGAGGATGATAACGTGC 358 ************************************************************ consensus_3795#0 CGTTCAAGGCAGGG-CTGGTGCTTGTGATAGCTGAACAGTACAGCGAAGCAGGCGACGCT 410 consensus_3795#1 CGTTCAAGGCAGGGGCTGGTGCTTGTGATAGCTGAACAGTACAGCGAAGCAGGCGACGCT 418 ************** ********************************************* consensus_3795#0 AGGGCGTCCGGTGAGGATGCATCCCACGGCGAGGAGTATCGCACCGGCACGCCAGCGCTG 470 consensus_3795#1 AGGGCGTCCGGTGAGGATGCATCCCACGGCGAGGAGTATCGCACCGGCACGCCAGCGCTG 478 ************************************************************ consensus_3795#0 CGGAACCGTTATCGCACAGTTCTGCCAGGGCCACGAACTGGAGCATCTGCTGACTGACAG 530 consensus_3795#1 CCGGAACCGTATCGCACAGTTCTGCCAGGGCCACGAACTGGAGCATCTGCTGACTGACAG 538 * * * * *************************************************** consensus_3795#0 GGGCAGGTGATCGGGTAATGGC-GTCACTTGCACGAGCACTATCGGCGGGGTGCTGTCGG 589 consensus_3795#1 CGGCAG-TGATCGCGGTATGGCCGTCACTTGCCCGACC---------------------- 575 ***** ****** * ***** ********* *** * consensus_3795#0 CGAAGCGGAGTTGGAAAGCATTCATTCCCGGGCCGACGTGGGCAACGGGTTCGTGCGGCT 649 consensus_3795#1 ------------------------------------------------------------ consensus_3795#0 TGGTGGAGCTGCTGGTACCGGCCCCTAATCCCGGTAGAGTTGGCGCCCCNGCNGCGCAAG 709 consensus_3795#1 ------------------------------------------------------------ consensus_3795#0 TGGAACGATTAACCGGGCGGCATATA 735 consensus_3795#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||