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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1344 fasta sequence
[CCGCCCACGCGTCCGCTGGTACGAAGGTGGATTCCAAGCAGCGCATCACCGTGCGAAATTTGCGCATTCGCGAGGATACGGCAAAGTACCTCCGCAATCTTGATCCCAATTCGGCCTACTACGACCCAAAGACGCGCTCGATGCGCGACAATCCTACGCCACAGCTCAACCCGGAGGAGACCGAGTTTGCGGGAGAGAACTTTGTGCGCTACTCGGGTGACATCCAGAAGCACGCCCAGGCGCAACTGTTTGCGTGGGAAGCGTACGGCAAGGGTGTGGATGTGCATGTGCTGGCCGAGCCGACGAAGCTGGAGTTGCTGCAAAAGGAATACGAGAAGAAAAAGTCACAGTTCAAGGATGAGGTGAAAAACAAAGTGCTGGAGCAGTACGGCGGGGAGGAGCATTTAGCCGTGCCGCCCAAAGCACTGTTGCTGGCCCAGACGGAAAACTATGTGGAGTATTCGCGATACGGCAAAATTATCAAGGGACAGGATAAGCCCATCATTCGGTCACGGTACGAAGAAGACGTATACATTAACAATCACACCACCGTGTGGGGTTCGTATTGGAGCAACGGTTGCTGGGGTTACAAGTGTTGCGAGTCGATGATCAAAAACTCATACTGCGTGGGAGAGAATGGCAAAGCTGCTACGACTAAGCCAACCAATGAGGTCGCCAACCCGTCCGAAACGGTTGTCGAAAACGACGCGCCTAAAATGTGCCCAGAAAATCAAGCTAAACCACCACCTGCTGCTGTAGCGGATGCATTGCAAACTACTGACAAACAGCAGAGCCAACAAACAGCACGCGGTGCTTCGCAGCCGGAAGGAACAACACCAGTAGGCGGCGACAACAACAGCAGTGACAGCAGCAACAGCGACAGCGATTCCGAATCCGAAGGCACTGCTAAGCGCGGTCGCAAGGAATCGAAGAAATCGAAAAAGAAGCGCAAGAAGGAAAAGAAGCGTCAGCAACGGCGGGAAGAGAAAAACTCACGCAAAAAGTCCGAGGGCAAGGCAGAGAAAGATAAGCTACAGCTTGCGCTGGAAGCGGAAGAGCAAAGCCAGCGGCGGGCAGCAGAACTATTACGCCAGGACGAACGAAAACGTCCGTACAACAGTATGTACGACGTGAAAGCCCCAACTGAGGAGGAAATTGAAGCCTACATGATGAAGCGACGCCGGGAGGAAGATCCAATGCTGGCGTTCATGGACAAGTGAGCGCGACAATCAATCGGCAATATGCATTAGAATGGGCGTGAGTATCGCGTAATATATAATTTGAAGCTTTAGTTTTACGGACAAACGCGCAGATTCAAACTTTATGCNAATAATGTAACTGTAT]
[+] EMBL BM624305 [CCGCCCACGCGTCCGCTGGTACGAAGGTGGATTCCAAGCAGCGCATCACCGTGCGAAATTTGCGCATTCGCGAGGATACGGCAAAGTACCTCCGCAATCTTGATCCCAATTCGGCCTACTACGACCCAAAGACGCGCTCGATGCGCGACAATCCTACGCCACAGCTCAACCCGGAGGAGACCGAGTTTGCGGGAGAGAACTTTGTGCGCTACTCGGGTGACATCCAGAAGCACGCCCAGGCGCAACTGTTTGCGTGGGAAGCGTACGGCAAGGGTGTGGATGTGCATGTGCTGGCCGAGCCGACGAAGCTGGAGTTGCTGCAAAAGGAATACGAGAAGAAAAAGTCACAGTTCAAGGATGAGGTGAAAAACAAAGTGCTGGAGCAGTACGGCGGGGAGGAGCATTTAGCCGTGCCGCCCAAAGCACTGTTGCTGGCCCAGACGGAAAACTATGTGGAGTATTCGCGATACGGCAAAATTATCAAGGGACAGGATAAGCCCATCATTCGGTCACGGTACGAAGAAGACGTATACATTAACAATCACACCACCGTGTGGGGTTCGTATTGGAGCAACGGTTGCTGGGGTTACAAGTGTTGCGAGTCGATGATCAAAAACTCATACTGCGTGGGAGAGAATGGCAAAGCTGC ]
[+] EMBL BX625239 [ CGTATTGGAGCAACGGTTGCTGGGGTTACAAGTGTTGCGAGTCGATGATCAAAAACTCATACTGCGTGGGAGAGAATGGCAAAGCTGCTACGACTAAGCCAACCAATGAGGTCGCCAACCCGTCCGAAACGGTTGTCGAAAACGACGCGCCTAAAATGTGCCCAGAAAATCAAGCTAAACCACCACCTGCTGCTGTAGCGGATGCATTGCAAACTACTGACAAACAGCAGAGCCAACAAACAGCACGCGGTGCTTCGCAGCCGGAAGGAACAACACCAGTAGGCGGCGACAACAACAGCAGTGACAGCAGCAACAGCGACAGCGATTCCGAATCCGAAGGCACTGCTAAGCGCGGTCGCAAGGAATCGAAGAAATCGAAAAAGAAGCGCAAGAAGGAAAAGAAGCGTCAGCAACGGCGGGAAGAGAAAAACTCACGCAAAAAGTCCGAGGGCAAGGCAGAGAAAGATAAGCTACAGCTTGCGCTGGAAGCGGAAGAGCAAAGCCAGCGGCGGGCAGCAGAACTATTACGCCAGGACGAACGAAAACGTCCGTACAACAGTATGTACGACGTGAAAGCCCCAACTGAGGAGGAAATTGAAGCCTACATGATGAAGCGACGCCGGGAGGAAGATCCAATGCTGGCGTTCATGGACAAGTGAGCGCGACAATCAATCGGCAATATGCATTAGAATGGGCGTGAGTATCGCGTAATATATAATTTGAAGCTTTAGTTTTACGGACAAACGCGCAGATTCAAACTTTATGCNAATAATGTAACTGTAT]
consensusID : consensus_3798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence
[AGCACGCCCAGGCGCAACTTTTTGCGTGTGGAAGCGTACGGCAAGGGTGTGTGATGTGCATGTGCTGGCCGAGCCGACGAAGCTTGGAGTTTGCTTGGCAAAAGGAGTACGAGAAGGAAAAAAGGTTCCGCCAAGGTTCCAAGGGATTGAAGGGTTGGAAAAACCAAAAGGTTGGCTTGGGAAGGCCAAGGTTACCGGGCCGGGGGGAAGGGAAGGCCAATTTTAAGGCCCGGTTGGCCCCGGCCCCAAAAGGC]
[+] EMBL AL694164 [AGCACGCCCAGGCGCAACTTTTTGCGTGTGGAAGCGTACGGCAAGGGTGTGTGATGTGCATGTGCTGGCCGAGCCGACGAAGCTTGGAGTTTGCTTGGCAAAAGGAGTACGAGAAGGAAAAAAGGTTCCGCCAAGGTTCCAAGGGATTGAAGGGTTGGAAAAACCAAAAGGTTGGCTTGGGAAGGCCAAGGTTACCGGGCCGGGGGGAAGGGAAGGCCAATTTTAAGGCCCGGTTGGCCCCGGCCCCAAAAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3798#0 CCGCCCACGCGTCCGCTGGTACGAAGGTGGATTCCAAGCAGCGCATCACCGTGCGAAATT 60
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 TGCGCATTCGCGAGGATACGGCAAAGTACCTCCGCAATCTTGATCCCAATTCGGCCTACT 120
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 ACGACCCAAAGACGCGCTCGATGCGCGACAATCCTACGCCACAGCTCAACCCGGAGGAGA 180
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 CCGAGTTTGCGGGAGAGAACTTTGTGCGCTACTCGGGTGACATCCAGAAGCACGCCCAGG 240
consensus_3798#1 ------------------------------------------------AGCACGCCCAGG 12
************
consensus_3798#0 CGCAACTGTTTGCGTG-GGAAGCGTACGGCAAGGGTGTG-GATGTGCATGTGCTGGCCGA 298
consensus_3798#1 CGCAACTTTTTGCGTGTGGAAGCGTACGGCAAGGGTGTGTGATGTGCATGTGCTGGCCGA 72
******* ******** ********************** ********************
consensus_3798#0 GCCGACGAAGCT-GGAGTT-GCT--GCAAAAGGAATACGAGAAGAAAAAGTCACAGTTCA 354
consensus_3798#1 GCCGACGAAGCTTGGAGTTTGCTTGGCAAAAGGAGTACGAGAAGGAAAA---AAGGTTCC 129
************ ****** *** ********* ********* **** * ****
consensus_3798#0 AGGATGAGGTGAAAAACAAAGTGCTGGAGCAGTACGGCGGGGAGGAGCATTTAGCCGTGC 414
consensus_3798#1 --GCCAAGGTTC----CAAGGGATTGAAG------GGTTGGAAAAACCAAAAGGTTGGCT 177
* **** *** * ** ** ** ** * * ** * *
consensus_3798#0 CGCCCAAAGCACTGTTGCTGGCCCAGACGGAAAACTATGTGGAGTATTCGCGATACGGCA 474
consensus_3798#1 TGGGAAGGCCAAGGTTACCGGGCCGGGGGGAAG-------GGAAGGCCAATTTTAAGGCC 230
* * ** *** * ** ** * **** *** ** ***
consensus_3798#0 AAATTATCAAGGGACAGGATAAGCCCATCATTCGGTCACGGTACGAAGAAGACGTATACA 534
consensus_3798#1 CGGTTGGCCCCGGCCCCAAAAGGC------------------------------------ 254
** * ** * * * **
consensus_3798#0 TTAACAATCACACCACCGTGTGGGGTTCGTATTGGAGCAACGGTTGCTGGGGTTACAAGT 594
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 GTTGCGAGTCGATGATCAAAAACTCATACTGCGTGGGAGAGAATGGCAAAGCTGCTACGA 654
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 CTAAGCCAACCAATGAGGTCGCCAACCCGTCCGAAACGGTTGTCGAAAACGACGCGCCTA 714
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 AAATGTGCCCAGAAAATCAAGCTAAACCACCACCTGCTGCTGTAGCGGATGCATTGCAAA 774
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 CTACTGACAAACAGCAGAGCCAACAAACAGCACGCGGTGCTTCGCAGCCGGAAGGAACAA 834
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 CACCAGTAGGCGGCGACAACAACAGCAGTGACAGCAGCAACAGCGACAGCGATTCCGAAT 894
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 CCGAAGGCACTGCTAAGCGCGGTCGCAAGGAATCGAAGAAATCGAAAAAGAAGCGCAAGA 954
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 AGGAAAAGAAGCGTCAGCAACGGCGGGAAGAGAAAAACTCACGCAAAAAGTCCGAGGGCA 1014
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 AGGCAGAGAAAGATAAGCTACAGCTTGCGCTGGAAGCGGAAGAGCAAAGCCAGCGGCGGG 1074
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 CAGCAGAACTATTACGCCAGGACGAACGAAAACGTCCGTACAACAGTATGTACGACGTGA 1134
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 AAGCCCCAACTGAGGAGGAAATTGAAGCCTACATGATGAAGCGACGCCGGGAGGAAGATC 1194
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 CAATGCTGGCGTTCATGGACAAGTGAGCGCGACAATCAATCGGCAATATGCATTAGAATG 1254
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 GGCGTGAGTATCGCGTAATATATAATTTGAAGCTTTAGTTTTACGGACAAACGCGCAGAT 1314
consensus_3798#1 ------------------------------------------------------------
consensus_3798#0 TCAAACTTTATGCNAATAATGTAACTGTAT 1344
consensus_3798#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||