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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1014 fasta sequence
[TCCCCGAGGTTTAATGGCAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGG-TGGAATTAACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGA-CTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCT-CTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGNTGGACGTNGTGCGAGCCTGTACGATACTGNATGTGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGTCCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCCGGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCANGAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGATTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGGCCNGCTACGAACNNCACTACCTTAAAAC]
[+] EMBL AL694172 [TCCCCGAGGTTTAATGGCAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGG TGGAATTAACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGA CTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCT CTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAA ]
[+] EMBL AL929921 [ ggttAAAAC AGGACGAGTTTCGGNNGGAAT ACTATTCCGATTCCGGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTACTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGNTGGACGTNGTGCGAGCCTGTACGATACTGNATGTGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGTCCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCCGGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCANGAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGATTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGGCCNGCTACGAACNNCACTACCTTAAAAC]
consensusID : consensus_3800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence
[AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAGAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAAAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGCTGTACGATACTGTTATGTGGCTGGTCATGTATACGCATGGAACCGAACGACTTGATGGCTCCCCGTAAAGTCCTTTTAGGTCGTCACACAAGGATAGAGGGAGTCACGTGACAGGTTGGAATGGG]
[+] EMBL BX607007 [AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGGAATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAGTTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGGAATCAATACTGGATTTGATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACCTAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAGCTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACCCGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTCCCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCCCGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAGAGAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAAAGATCGATGGATGAGCCGATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGCTGTACGATACTGTTATGTGGCTGGTCATGTATACGCATGGAACCGAACGACTTGATGGCTCCCCGTAAAGTCCTTTTAGGTCGTCACACAAGGATAGAGGGAGTCACGTGACAGGTTGGAATGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3800#0 -----------------------------TCCCCGAGGTTTAATGGCA-GAATTCTATGG 30
consensus_3800#1 AATTGCAAGTAACGGTCCGTTGACTGTAGGCGTTGTTGGCAAATGGCAAGAATTCTATGG 60
* * * ******* ***********
consensus_3800#0 AATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAG 90
consensus_3800#1 AATGGTGGTGAATACGATTCGGTCCCAAGGAGCACAAATGGCTCAGAAAGTGCACAGAAG 120
************************************************************
consensus_3800#0 TTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTATTCCGATTCC 150
consensus_3800#1 TTGTAGATGCAGAGCAGCAAAACAAGGACGAGTTTCGGTGGAATTAACTAT--------- 171
***************************************************
consensus_3800#0 GGAGTCGATTCCGGAACCGATTCCGATTCCGGTGTCGATTCCGGAATCAATACTGGATTT 210
consensus_3800#1 ---------------------------------------TCCGGAATCAATACTGGATTT 192
*********************
consensus_3800#0 GATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGAC- 269
consensus_3800#1 GATTACGGAACCAATTCCGGGGCCGATTTTGGAATCGATTTCGGAACCTGATTCCGGACC 252
***********************************************************
consensus_3800#0 TAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAG 329
consensus_3800#1 TAATATCCGGAATCGATTCCAGAAAACTGCGGAGCTAACCGGAATCGATTCCGACAAAAG 312
************************************************************
consensus_3800#0 CTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACC 389
consensus_3800#1 CTTCATTTTTCCCATCACTAGTATACATGATGTGATCGGATTTTACGGAGCAGCGGGACC 372
************************************************************
consensus_3800#0 CGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTC 449
consensus_3800#1 CGTGGACTACAAGTAACATGGTTCAGCCTAGGGCTGGTCATACTACTGAGCATCATTCTC 432
************************************************************
consensus_3800#0 CCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCC 509
consensus_3800#1 CCTAACCAGTCAGCAAAATCTCTGGTATAGCGGCAGCCCAGGACTGAGCTCTCTAGCTCC 492
************************************************************
consensus_3800#0 CGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGACGCA 569
consensus_3800#1 CGAGATACTAATCAACAGCACTGTTGACGTTACGGCCGGGAGGAATTGCTTTTCGAG--A 550
******************************************************** *
consensus_3800#0 GAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAACAGATCGATGGATGAGCC 629
consensus_3800#1 GAAAGATGCTCAGAAGGATTTTTAAGCCCCGCAAGATAGGAA-AGATCGATGGATGAGCC 609
****************************************** *****************
consensus_3800#0 GATACAACTTGTACGAGTGCGTGNTGGACGTN--GTGCGAGCCTGTACGATACTGN-ATG 686
consensus_3800#1 GATACAACTTGTACGAGTGCGTGATGGACGTTTTGTGCGAGC-TGTACGATACTGTTATG 668
*********************** ******* ******** ************ ***
consensus_3800#0 TGGCTGGTCATGTANTACGCNCTGGAACCGAACGACTTGATGGGCTCCCCGTAAAAAGGT 746
consensus_3800#1 TGGCTGGTCATGTAT-ACGCA-TGGAACCGAACGACTTGATGG-CTCCCCGTAAA---GT 722
************** **** ********************* *********** **
consensus_3800#0 CCTTTATACGGGTNCNGTACAACAACAAAGGGATTAGACNGGAAGTCACCNGTTGAANCC 806
consensus_3800#1 CCTTT-TA-GGTCGTCACACAAGGATAGAGGGAGTC------ACGTGACAGGTTGGAATG 774
***** ** ** **** * * ***** * * ** ** **** *
consensus_3800#0 GGGTTGGCACTGGGGAAAGNTTGGGCTGTGACTAACCCGCGAATCCGCGCAGACTGGCAN 866
consensus_3800#1 GG---------------------------------------------------------- 776
**
consensus_3800#0 GAAACCGTTGACANGCATCAAGCCNATTCCCGACACCACTCTCTGCAAACTNACCAACGA 926
consensus_3800#1 ------------------------------------------------------------
consensus_3800#0 TTACCCAGGTCNGCGCANACAGNCTGGNCTACGTCACCACTGTNTTTCAACTNAACATGG 986
consensus_3800#1 ------------------------------------------------------------
consensus_3800#0 CCNGCTACGAACNNCACTACCTTAAAAC 1014
consensus_3800#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||