cluster # 3806

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Anopheles gambiae
cluster # 3806 cluster # 3806 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3806#0 length = 658 sequences # 1

consensus_3806#1 length = 543 sequences # 2

consensusID : consensus_3806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAGACCGCGCTGCTTCCGTCGCAGAAGTTGCTGAATGAAATGGACTTACCCGCCCAAGCGCACCTGTTTGTGGAACAGCAGCATCACTTTGGTGATGAAATGGGTACGACTATCGCCACCACCACCACTACGACCGCCACCCAGCCGGACTACGGCGAGCTGCAGTTCTACGGGCAGCTGAAGAAGCTGCTCGACCTGCCGGTCCTGTTTGCCATCTGCTTCGTGCAGCTGATCTCGTTCGTGCTCGTGCTCAACATCGAGGAGTGCTCCCCGCTGGTGCTCTTTTCCTGGTGGCGTAACAAGATCTCCTGAAATTGACTAGCCGTCGTCGCTCGCCGCAGCCTTCAGTTCTGATTACAGCCGCCACCATCATCACCATCCCCACCGTCGTCGTCGTCGTCAGGGACCGGACCGACAGCAGCAGCAGCAGCAGCATCATCATTGCGATACGTTTGTTATGTTGAGTGTTGTTATGATTATTATTTAATTAATAATACGGTAGCAGCAGCAGTAACTGCAGCAGCAGCAGCAAGAAGATCCGGACTGCCGCAATACGATCGCCGCCAGCAGCAACAACAACAACAGCAACTGTCGGGGTTATAAGACGGCGAGCATGCGAGATGTCTGCTACT]

[+] EMBL BM604885             [CCGCCCACGCGTCCGCCCACGCGTCCGAGACCGCGCTGCTTCCGTCGCAGAAGTTGCTGAATGAAATGGACTTACCCGCCCAAGCGCACCTGTTTGTGGAACAGCAGCATCACTTTGGTGATGAAATGGGTACGACTATCGCCACCACCACCACTACGACCGCCACCCAGCCGGACTACGGCGAGCTGCAGTTCTACGGGCAGCTGAAGAAGCTGCTCGACCTGCCGGTCCTGTTTGCCATCTGCTTCGTGCAGCTGATCTCGTTCGTGCTCGTGCTCAACATCGAGGAGTGCTCCCCGCTGGTGCTCTTTTCCTGGTGGCGTAACAAGATCTCCTGAAATTGACTAGCCGTCGTCGCTCGCCGCAGCCTTCAGTTCTGATTACAGCCGCCACCATCATCACCATCCCCACCGTCGTCGTCGTCGTCAGGGACCGGACCGACAGCAGCAGCAGCAGCAGCATCATCATTGCGATACGTTTGTTATGTTGAGTGTTGTTATGATTATTATTTAATTAATAATACGGTAGCAGCAGCAGTAACTGCAGCAGCAGCAGCAAGAAGATCCGGACTGCCGCAATACGATCGCCGCCAGCAGCAACAACAACAACAGCAACTGTCGGGGTTATAAGACGGCGAGCATGCGAGATGTCTGCTACT]




>consensus_3806#0
CCGCCCACGCGTCCGCCCACGCGTCCGAGACCGCGCTGCTTCCGTCGCAGAAGTTGCTGA
ATGAAATGGACTTACCCGCCCAAGCGCACCTGTTTGTGGAACAGCAGCATCACTTTGGTG
ATGAAATGGGTACGACTATCGCCACCACCACCACTACGACCGCCACCCAGCCGGACTACG
GCGAGCTGCAGTTCTACGGGCAGCTGAAGAAGCTGCTCGACCTGCCGGTCCTGTTTGCCA
TCTGCTTCGTGCAGCTGATCTCGTTCGTGCTCGTGCTCAACATCGAGGAGTGCTCCCCGC
TGGTGCTCTTTTCCTGGTGGCGTAACAAGATCTCCTGAAATTGACTAGCCGTCGTCGCTC
GCCGCAGCCTTCAGTTCTGATTACAGCCGCCACCATCATCACCATCCCCACCGTCGTCGT
CGTCGTCAGGGACCGGACCGACAGCAGCAGCAGCAGCAGCATCATCATTGCGATACGTTT
GTTATGTTGAGTGTTGTTATGATTATTATTTAATTAATAATACGGTAGCAGCAGCAGTAA
CTGCAGCAGCAGCAGCAAGAAGATCCGGACTGCCGCAATACGATCGCCGCCAGCAGCAAC
AACAACAACAGCAACTGTCGGGGTTATAAGACGGCGAGCATGCGAGATGTCTGCTACT

consensusID : consensus_3806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 543
fasta sequence

                              [CGCGTGGGTTCTGCTCTATCTCTTCCCTTTCCCTTCCCGCCCTCCGCCCGCCGTCGGCTGATGCGTTCTCTGACGATGGCGGTGCACCAGCAACCGGTTGTCCCACCACTTCCCTTCCCACTTCCGAAACAACCGCCACCGTCCCGTTGCGTCCCGAGCAGAAGCGTCCGCCTCTGAAACCTATCGCTTCCCCCGTCGCTCCATCGCTTCCGTTGTCGATCGCATTCGCTCGGTTGATCTTTAGCATCTTTCCCGCTCTCATCGCCACATTCGGTGTCGGCCCGAAGAAGGGCGTCGAGGGGCAACGTCCCGATCGGGCTGCGGCCACCACCAACCCGGATAGGCGCAACGGAAAATGCCACAAGCAGCAGCTAAACAATGGTCACGAAACACGCCAGCAGGACGAATGCTACTACCGTTCGCTTCCCGATCGTCTCTACGCCCAGCTACACCCGTACCGTGCCCTCGGCAAGACCGCGCTGCTTCCGTCGCAGAAGTTGCTGAATGAAATGGACTTACCCGCACAATCGCACCTATTTATGG]

[+] EMBL BM604509             [CGCGTGGGTTCTGCTCTATCTCTTCCCTTTCCCTTCCCGCCCTCCGCCCGCCGTCGGCTGATGCGTTCTCTGACGATGGCGGTGCACCAGCAACCGGTTGTCCCACCACTTCCCTTCCCACTTCCGAAACAACCGCCACCGTCCCGTTGCGTCCCGAGCAGAAGCGTCCGCCTCTGAAACCTATCGCTTCCCCCGTCGCTCCATCGCTTCCGTTGTCGATCGCATTCGCTCGGTTGATCTTTAGCATCTTTCCCGCTCTCATCGCCACATTCGGTGTCGGCCCGAAGAAGGGCGTCGAGGGGCAACGTCCCGATCGGGCTGCGGCCACCACCAACCCGGATAGGCGCAACGGAAAATGCCACAAGCAGCAGCTAAACAATGGTCACGAAACACGCCAGCAGGACGAATGCTACTACCGTTCGCTTCCCGATCGTCTCTACGCCCAGCTACACCCGTACCGTGCCCTCGGCAAGACCGCGCTGCTTCCGTCGCAGAAGTTGCTGAATGAAATGGACTTACCCG                     ]
[+] EMBL BX604108             [                                                                                                                                                                                                                                                  AGCATCTTTCCCGCGCTCATTGCCACATTCGGTGTCGGCCCGAAGAAGGGCGTCGAGGGGCAACGTACCGATCGGGCTGCGGCCACCACCAACCCGGATAGGCGCAACGGAAAATGCCACAAGCAGCAGCTAAACAATGGTCACGAAACACGCCAGCAGGACGAATGCTACTACCGCTCGCTTCCCGATCGTCTCTACGCCCAGCTACACCCGTACCGTGCCCTCGGCAAGACCACGCTGCTTCCGTCGCAGAAGTTGCTGAATGAAATGGACTTACCCGCACAATCGCACCTATTTATGG]




>consensus_3806#1
CGCGTGGGTTCTGCTCTATCTCTTCCCTTTCCCTTCCCGCCCTCCGCCCGCCGTCGGCTG
ATGCGTTCTCTGACGATGGCGGTGCACCAGCAACCGGTTGTCCCACCACTTCCCTTCCCA
CTTCCGAAACAACCGCCACCGTCCCGTTGCGTCCCGAGCAGAAGCGTCCGCCTCTGAAAC
CTATCGCTTCCCCCGTCGCTCCATCGCTTCCGTTGTCGATCGCATTCGCTCGGTTGATCT
TTAGCATCTTTCCCGCTCTCATCGCCACATTCGGTGTCGGCCCGAAGAAGGGCGTCGAGG
GGCAACGTCCCGATCGGGCTGCGGCCACCACCAACCCGGATAGGCGCAACGGAAAATGCC
ACAAGCAGCAGCTAAACAATGGTCACGAAACACGCCAGCAGGACGAATGCTACTACCGTT
CGCTTCCCGATCGTCTCTACGCCCAGCTACACCCGTACCGTGCCCTCGGCAAGACCGCGC
TGCTTCCGTCGCAGAAGTTGCTGAATGAAATGGACTTACCCGCACAATCGCACCTATTTA
TGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3806#0      CCGCCCACGCGTCCGCCCACGCGTCCGAGACCGCGCTGCTTCCGTCGCAGAAGTTGCTGA 60
consensus_3806#1      -------------------------------CGCGTGGGTTCTGCTCTATCTCTTCCC-- 27
                                                     ****  * *** *    *    ** *   

consensus_3806#0      ATGAAATGGACTTACCCGCCCAAGCGCACCTGTTTGTGGAACAGCAGCATCACTTTGGTG 120
consensus_3806#1      ------TTTCCCTTCCCGCCCTCCGCCCGCCGTCGGCTGATGCGTTCTCTGACGATGGCG 81
                            *   * * *******     *  * **  *  **   *     * **  *** *

consensus_3806#0      ATGAAATGGGTACGACTATCGCCACCACCACCACTACGACCGCCACCCAGCCGGACTACG 180
consensus_3806#1      GTGCACCAGCAAC--CGGTTGTC-CCACCACTTCCCTTCCCACTTCCGAAACAACCGCCA 138
                       ** *   *  **  *  * * * *******  *     ** *  ** *  *   *  * 

consensus_3806#0      GCGAGCTGCAGTTCTACGGGCAGCTGAAGAAGCTGCTCGACCTGCCGGTCCTGTTTGCCA 240
consensus_3806#1      CCGTCCCGTTGCGTCCCGAGCA---GAAGCGTCCGCCTCTGAAACCTATCGCTTCCCCCG 195
                       **  * *  *     ** ***   ****   * **        **  **   *   ** 

consensus_3806#0      TCTGCTTCGT-GCAGCTGATCTCGTTCGTGCTCGTGC--TCAACATCGAGGAGTGCTCCC 297
consensus_3806#1      TC-GCTCCATCGCTTCCGTTGTCGATCGCATTCGCTCGGTTGATCTTTAGCATCTTTCCC 254
                      ** *** * * **  * * * *** ***   ***  *  *  *  *  ** *    ****

consensus_3806#0      -CGCTGGTGCTCTTTTCC--TGGTGGCGT-AACAAGATCTCCTGAAATTGACTAGCCGTC 353
consensus_3806#1      GCTCTCATCGCCACATTCGGTGTCGGCCCGAAGAAGGGCGTCGAGGGGCAACGTCCCGAT 314
                       * **  *   *   * *  **  ***   ** ***  *  *        **   ***  

consensus_3806#0      GTCGCTCGCCGCAGCCTTCAGTTCTGATTACAGCCGCCACCATCATCACCATCCCCACCG 413
consensus_3806#1      CGGGCT-GCGGCCACCACCAACCCGGAT---AGGCGCAACGGAAAATGCCACAAGCAGCA 370
                         *** ** **  **  **   * ***   ** *** **    *   ***    ** * 

consensus_3806#0      TCGTCGTCGTCGTCAGGGACCGGACCGACAGCAGCAGCAGCAGCAGCATCATCATTGCGA 473
consensus_3806#1      GCTAAACAATGGTCACGAAACACGCCAGCAGGACGAATGCTACTACCGTTCGCTTCCCGA 430
                       *       * **** * * *   **  *** *  *     *  * * *   * *  ***

consensus_3806#0      TACGTTTGTTATGTTGAGTGTTGTTATGATTATTATTTAATTAATAATACGGTAGCAGCA 533
consensus_3806#1      T-CGTCT-CTACGCCCAGCTACACCCG---TACCGTGCCCTCGGCAAGACCGC------- 478
                      * *** *  ** *   **            **   *    *    ** ** *        

consensus_3806#0      GCAGTAACTGCAGCAGCAGCAGCAAGAAGATCCGGACTGCCGCAATACGATCGCCGCCAG 593
consensus_3806#1      GCTGCTTCCGTCGCAGAAGTTGCTGAATGAAATGGACTTAC-CCGCACAATCGCACCTAT 537
                      ** *   * *  **** **  **   * **   *****  * *   ** *****  * * 

consensus_3806#0      CAGCAACAACAACAACAGCAACTGTCGGGGTTATAAGACGGCGAGCATGCGAGATGTCTG 653
consensus_3806#1      TTATGG------------------------------------------------------ 543
                                                                                  

consensus_3806#0      CTACT 658
consensus_3806#1      -----