These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGCGGACGCGTGGGCTCGGCGTAGCAGAAGGAGTGCAACCCCCGGCGTAGCCCCAGGTGTACGTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAGCACAACAACAACAAGATCGATAACTACCTCAACAAGGAACACGGGCAGGTGCTGGTCACGTTCGAGTCGGCGGCCGAGTTTATCGAG] [+] EMBL BM604427 [CCGCGGACGCGTGGGCTCGGCGTAGCAGAAGGAGTGCAACCCCCGGCGTAGCCCCAGGTGTACGTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAGCACAACAACAACAAGATCGATAACTACCTCAACAAGGAACACGGGCAGGTGCTGGTCACGTTCGAGTCGGCGGCCGAGTTTATCGAG] consensusID : consensus_3809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [CCGCGGACGCGTGGGTTAAAAAAATAGTGTCGATAGCGAGAGAGAAAGGGAAAAAAGTCACTTCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAG] [+] EMBL BM654529 [CCGCGGACGCGTGGGTTAAAAAAATAGTGTCGATAGCGAGAGAGAAAGGGAAAAAAGTCACTTCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAG] consensusID : consensus_3809#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [GTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGGCAAGTACGCGCGTTACGCGACCAGAGGGAAGAATTTCCTAAGCCTTGCAATTGCAGTGCAGTGAATTATTCCAGTCAATAAATCCCCATCCCAGTGTCGTGTAAAGGAATCTATAATTTAAAAAAATAGTGTCGATAGCTTAGAGAGAAAGGGAAAAAAGTCACTCCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACTGCCGTCCTGCCGGCTTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCAGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCAC] [+] EMBL BM642561 [GTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGGCAAGTACGCGCGTTACGCGACCAGAGGGAAGAATTTCCTAAGCCTTGCAATTGCAGTGCAGTGAATTATTCCAGTCAATAAATCCCCATCCCAGTGTCGTGTAAAGGAATCTATAATTTAAAAAAATAGTGTCGATAGCTTAGAGAGAAAGGGAAAAAAGTCACTCCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACTGCCGTCCTGCCGGCTTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCAGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3809#0 ------------------------------------------------------------ consensus_3809#1 ------------------------------------------------------------ consensus_3809#2 GTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGGCAAGTACGCGCGTTACGCGA 60 consensus_3809#0 ------------------------------------------------------------ consensus_3809#1 ------------------------------------------------------------ consensus_3809#2 CCAGAGGGAAGAATTTCCTAAGCCTTGCAATTGCAGTGCAGTGAATTATTCCAGTCAATA 120 consensus_3809#0 ----------CCGCGGACGCGT---GGGCTCGGCGTAGCAGAAGGAGTGCAACCCCCGGC 47 consensus_3809#1 ----------CCGCGGACGCGT---GGGTT----------AAAAAAATAGTGTCGATAGC 37 consensus_3809#2 AATCCCCATCCCAGTGTCGTGTAAAGGAATCTATA-ATTTAAAAAAATAGTGTCGATAGC 179 ** * ** ** ** * ** * * * ** consensus_3809#0 GTAG-CCCCAGGTGTACGTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGAGTC 106 consensus_3809#1 GAGA-GAGAAAGGGAAAAAAGTCACTTCACAACTGC-ACAACGATGCATGAATTCGAGTC 95 consensus_3809#2 TTAGAGAGAAAGGGAAAAAAGTCACTCCACAACTGC-ACAACGATGCATGAATTCGAGTC 238 * * * * * * * ** ** * * ** * ***** consensus_3809#0 GAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCC 166 consensus_3809#1 GAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCC 155 consensus_3809#2 GAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACTGCCGTCCTGCC 298 ************************************************ *********** consensus_3809#0 GGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTA 226 consensus_3809#1 GGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTA 215 consensus_3809#2 GGCTTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCAGACGTGGTCTA 358 *** ******************************************** *********** consensus_3809#0 TCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCA 286 consensus_3809#1 TCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCA 275 consensus_3809#2 TCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCA 418 ************************************************************ consensus_3809#0 GAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGA 346 consensus_3809#1 GAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGA 335 consensus_3809#2 GAAGCACACGCTGCAGATGAACAGCAC--------------------------------- 445 *************************** consensus_3809#0 AGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATAC 406 consensus_3809#1 AGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATAC 395 consensus_3809#2 ------------------------------------------------------------ consensus_3809#0 GCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTC 466 consensus_3809#1 GCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTC 455 consensus_3809#2 ------------------------------------------------------------ consensus_3809#0 CCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGG 526 consensus_3809#1 CCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGG 515 consensus_3809#2 ------------------------------------------------------------ consensus_3809#0 GCTGCTCGAGCACAACAACAACAAGATCGATAACTACCTCAACAAGGAACACGGGCAGGT 586 consensus_3809#1 GCTGCTCGAG-------------------------------------------------- 525 consensus_3809#2 ------------------------------------------------------------ consensus_3809#0 GCTGGTCACGTTCGAGTCGGCGGCCGAGTTTATCGAG 623 consensus_3809#1 ------------------------------------- consensus_3809#2 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||